rna6305, rna6305 (mRNA) Nannochloropsis gaditana

Overview
Namerna6305
Unique Namerna6305
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2658
Alignment locationCM002468.1:211532..212626 -

Link to JBrowse

Properties
Property NameValue
Producttyrosyl-dna phosphodiesterase
Orig transcript idgnl|cribi|Naga_100313g8.7266.mrna
Orig protein idgnl|cribi|Naga_100313g8.7266
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:211532..212626 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100313g8gene6096Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24376.1cds6290Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6305rna6305-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6305 ID=rna6305|Name=rna6305|organism=Nannochloropsis gaditana|type=mRNA|length=2658bp
AGAGGGCAGGGTGCGTGCAAGGAGACAACGCGGCTAGCTTGGGTCTTGAT
CACGTCGCACAACTATAGCAAGCCGGCCTGGGGTGAATTGCAATCCAAAG
GCGAAGTTTTCAAGATTCAAAGCTTTGAAATGGGGGTCCTTTTCCTCCCC
TCCCGGTACCCGCGCCTAGCTCGAACCTTTTCATTGACCCCCTCCCACCC
CCTCCTCGGTTTAGGACCGCCAGCTCAAGAAAACATCTGTGGATTCTACT
CGGCAGGATGGCAGGAGGCTAGGAAGGTTGCTAGGCGAGAGGGGGGAGGC
GGGGGGAAGGGGGGGGCGCTCCTGGCATTTCCCCTACCCTACGAATGTCC
ACCCACACGGTATGATTCTAGGGACGAGCCGTGGGTAAGCCCTGTGCACC
ATTACTAAAGAGGCAGGAGAAACAGGTCAGCGACCGATAGGAGATAGAAA
AGGTCGAGGAAGTTTCCAGCCGTGTAAATGTGTCTGGAAAGAAGTCTTGA
GGACAGGGTGCTTGAGGCCTCGTCAAAAGAAAGGGCAGACTTTCATAGTT
ACAAGGGACAGCATAGTATCAAACAAGGGTGAAATATACATAAAGAGCAT
GATGTAATTTTATGAAAGACTGGGAAGAAATGAACATGTGAGCCAGGAGC
AACACGTATGCGGTGGGAGGGGGCTTGTGCTTCTTTTCAGACTAGAAGGA
TAGATATAGCCATTTGCCGAATCCATTTAGGGTGAGGACAGTCACGAAAG
GGCCGATGCCATCGTGCCTACGAACATGATCGAACCAAAAAGGACCTTGG
ACAAGGCCAATGGATAAAAGGACGGTATGCTATGCACGGGGCAGTTTGCC
TCCGACTCTTCCTGCAAATAACCTCCTGACTGTCTCGAAAGAAAATTTCG
TAAGTTCCATGTTCTGGGAAAGCTAGCTAGGACGACAAAGTCCACGGTCC
CACGACAACAAATTGATAGAGAATTTCTGCCTCCAATTTGATGGCTGTGT
CATTTACAATTTGTGGCACGCTGAGTGCGATTTCGTAGCTACGCGACGGA
GGTGTTGAAAGATCAGGCGTAATGCACGTTTGTGTTGCGTCCCGACATGG
TGACTACCTTTTCTCAAAATTTTGTTGCTTAAAAGGGACCAAAGGATACA
TTAAACAGCGTTCATGTGGATGAAATGATCAAATTCATCCATTCTGATAT
GTGCCCCACGATCTTGTACTATTTTTGACCACCCGATTCCACTCGCACCC
ACCAACATTCATGTCCCTGCCTAGGTTTGCCGTTTGAAATGCCGCCCTCC
TCCACTTCGCCTCGTCCTCCCCCTTCCCTACGACCTCCGCCTCTTCTGGG
AGTAGTGCACCGCAAGTTTGCTGTCGTAGGTCATCGGGGGGCGGGGAAGT
CAAGTGTGACCAGGCGTTTCGTTCAAGAGAAGTTTACGATCCAATCGGCG
GCAGACCCGGATGAAGAATCTCTGTACAGAAAGGTGTTGGAAACTGAAGG
AGAGGAGCGAGGGGTGGCAAAAAGGAAAAGTAGCCACGAAAAAACGACGC
AGCTCGTGTGCTGCGATATAGTGGACACGCCAGGGCCTACCAGGCAGTAC
ACAGAGTACGCCAAGGAAGAATTCAGCCGGTTCCTCTCCCGCAATGCGCT
TATCGGCATTCATGGCTACCTGCTTGTCTACGACATCACCTCCCGCGAAT
CTTTTACCATTATCCAAACCCTGAACGAGGTCGTTTTGCGGTACCACGGC
GACTCGCCCGTGCCACGTGTCTTGTTGGGGGGCAAGTTGGATCTATGCGC
TCAGCGGCAGGTGGGAAAGGGTGAAGGCAGAGCATTGGCACGCACATTAG
GCATTCCCTTCCTGGAGATATCGGCCAAACACAACGTGGACGTTGAGAGG
GCCTTCCGATTGCTGTTGGAGGAAGTGGAGCGAGGGGAGGCGGGGGAGGG
GAAAGGCAAGTGGAGCCTCCTGGGCGGAGAGGAGGAGGAACAAGCCTTCT
TAGGATGTCGGCATGAGAGAGAAAGATCGTGGGAGTATGACGGGTACGGA
TATTGTGTGGTGAGCTAGGACATGTGAGAATTTATGCAGGGATGAATGCG
CCGAAGACTCCCGACTGCCCCCTGGCGGGCGCCAGAGGGATCGATGCACA
CGTTTTCGACCACTGCGCAGCCTCAAGTTCCACACGATGTCCAGTGAAAA
GAAAGTGACGAGACTGCAGGAGCTCGGGAACATGAGGGTTTGTGAATTTA
GGTGTCCCACGATGGATGCAAAGGTGTGGAGGAAGAGGAAAGGGTCGAAG
GGGGGAGTTGGAAACCCGAGAGGCTGCAATTTTGAAATTTTGAAAAATGC
GAAATACGTGTACCAGTTGTGTAGACGTAAAAATGTGCAGGATCCGAAAA
GTGTACCGTCATTGTGTAATATCATCATGTTGAGACATTCTTTTGGGGTG
GCGGCGGAGGATGAGCAGCAGATGCGGTCAGAGTACCATGGGTGAAGTCA
CCTTAAGTACGCGGGTTGCTTATAAGCGTTGGATCGGTGGGTCAGAGGAC
GGAGGGTGAGTCGTTCTTGATGCATGGATGACTCAACAAAGCTGTAACGA
GGACGCTCCTCATAGTTATGATGGAGTAAAAGAAGCAACAGACCGACGGG
CGGCAACC
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protein sequence of rna6305

>rna6305-protein ID=rna6305-protein|Name=rna6305|organism=Nannochloropsis gaditana|type=polypeptide|length=337bp
MSSLDGPEDQDKKRRRLVLHLAKSDPLPAAARSLLAPQHSLNTSDHGKCM
DENSESIVMTGGIAEKPVHDLTLESDEDDEEQVEVIESPHPRGSGIENGR
ETAASNPCAAETQSELKKSSKNGAEHANYSSSSGGKVGSSASLPLLPFYL
GQVCGLSPEYNAQCLGLEDIFSGAFHRAIVCNYMYEWSFFLETLPRLLSI
PWLCIYGDENPSTPQISEAFPNIATFKPRFRNTPFAWGTHHSKMALLLYE
GGIRVMICTSNFIEVDWHNKTQGIWVQDFPKLREEDKADDSLFGRDLREY
LQALNGFENECGSRGGEGGREGGREGGREGGRRRKDE
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mRNA from alignment at CM002468.1:211532..212626-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6305 ID=rna6305|Name=rna6305|organism=Nannochloropsis gaditana|type=mRNA|length=1095bp|location=Sequence derived from alignment at CM002468.1:211532..212626- (Nannochloropsis gaditana)
TGGCATAACTTCTCTTGTATCACAAAACAGGAAAACCAAAGCTCTGTTGA
GCGGTCATAGAAATACGACTGCCTGGACTTGGAGATGTCTAGCTTAGATG
GACCTGAGGACCAGGACAAAAAGCGGCGCAGACTCGTTTTGCACCTCGCG
AAGTCCGATCCCCTTCCCGCCGCGGCCAGATCTCTGCTTGCACCGCAGCA
CTCCTTGAATACCAGCGACCATGGCAAGTGTATGGATGAAAACAGTGAGA
GCATTGTAATGACGGGGGGAATCGCGGAGAAACCCGTGCACGACCTGACT
CTAGAGAGTGACGAGGACGACGAGGAGCAAGTGGAGGTTATCGAGTCCCC
GCATCCCCGAGGTTCTGGAATCGAAAATGGCCGCGAGACTGCTGCCAGCA
ATCCATGTGCCGCGGAAACACAGTCAGAACTCAAGAAAAGCTCGAAGAAC
GGGGCCGAACACGCGAACTACTCCAGCAGTAGCGGTGGGAAGGTGGGCTC
GTCGGCAAGTCTCCCTCTACTTCCCTTCTACCTGGGCCAGGTCTGTGGTC
TCTCCCCTGAATACAACGCGCAGTGCCTGGGGTTGGAGGATATTTTCTCC
GGTGCTTTTCATCGCGCCATTGTCTGCAACTACATGTACGAATGGTCCTT
CTTCCTGGAGACCCTGCCCCGCCTCCTCTCCATCCCTTGGCTGTGCATCT
ACGGAGATGAAAACCCGAGCACGCCCCAGATTTCCGAAGCCTTTCCCAAC
ATCGCCACCTTCAAACCTAGGTTCCGCAACACACCCTTCGCCTGGGGAAC
GCACCATTCCAAAATGGCCCTGCTATTGTACGAGGGGGGCATCCGCGTGA
TGATCTGCACGAGCAATTTCATCGAGGTGGACTGGCACAACAAGACGCAG
GGGATCTGGGTGCAAGACTTTCCAAAATTGCGCGAGGAAGACAAAGCGGA
CGATTCCTTGTTCGGTCGGGACCTGAGGGAGTACCTGCAGGCTTTGAATG
GTTTCGAGAACGAGTGCGGGTCGCGAGGTGGGGAAGGAGGAAGGGAAGGA
GGGAGGGAAGGAGGGAGGGAAGGAGGGAGGAGGCGGAAGGACGAG
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Coding sequence (CDS) from alignment at CM002468.1:211532..212626-

>rna6305 ID=rna6305|Name=rna6305|organism=Nannochloropsis gaditana|type=CDS|length=1011bp|location=Sequence derived from alignment at CM002468.1:211532..212626- (Nannochloropsis gaditana)
ATGTCTAGCTTAGATGGACCTGAGGACCAGGACAAAAAGCGGCGCAGACT
CGTTTTGCACCTCGCGAAGTCCGATCCCCTTCCCGCCGCGGCCAGATCTC
TGCTTGCACCGCAGCACTCCTTGAATACCAGCGACCATGGCAAGTGTATG
GATGAAAACAGTGAGAGCATTGTAATGACGGGGGGAATCGCGGAGAAACC
CGTGCACGACCTGACTCTAGAGAGTGACGAGGACGACGAGGAGCAAGTGG
AGGTTATCGAGTCCCCGCATCCCCGAGGTTCTGGAATCGAAAATGGCCGC
GAGACTGCTGCCAGCAATCCATGTGCCGCGGAAACACAGTCAGAACTCAA
GAAAAGCTCGAAGAACGGGGCCGAACACGCGAACTACTCCAGCAGTAGCG
GTGGGAAGGTGGGCTCGTCGGCAAGTCTCCCTCTACTTCCCTTCTACCTG
GGCCAGGTCTGTGGTCTCTCCCCTGAATACAACGCGCAGTGCCTGGGGTT
GGAGGATATTTTCTCCGGTGCTTTTCATCGCGCCATTGTCTGCAACTACA
TGTACGAATGGTCCTTCTTCCTGGAGACCCTGCCCCGCCTCCTCTCCATC
CCTTGGCTGTGCATCTACGGAGATGAAAACCCGAGCACGCCCCAGATTTC
CGAAGCCTTTCCCAACATCGCCACCTTCAAACCTAGGTTCCGCAACACAC
CCTTCGCCTGGGGAACGCACCATTCCAAAATGGCCCTGCTATTGTACGAG
GGGGGCATCCGCGTGATGATCTGCACGAGCAATTTCATCGAGGTGGACTG
GCACAACAAGACGCAGGGGATCTGGGTGCAAGACTTTCCAAAATTGCGCG
AGGAAGACAAAGCGGACGATTCCTTGTTCGGTCGGGACCTGAGGGAGTAC
CTGCAGGCTTTGAATGGTTTCGAGAACGAGTGCGGGTCGCGAGGTGGGGA
AGGAGGAAGGGAAGGAGGGAGGGAAGGAGGGAGGGAAGGAGGGAGGAGGC
GGAAGGACGAG
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Synonyms
Publications