EWM24376.1, cds6290 (CDS) Nannochloropsis gaditana

Overview
NameEWM24376.1
Unique Namecds6290
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:211532..212542 -

Link to JBrowse

Properties
Property NameValue
Start range211532
Start range.
Protein idEWM24376.1
Producttyrosyl-dna phosphodiesterase
Partialtrue
Orig transcript idgnl|cribi|Naga_100313g8.7266.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:211532..212542 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0008081phosphoric diester hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006259DNA metabolic process
GO:0006281DNA repair
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR010347Tdp1
Homology
BLAST of EWM24376.1 vs. NCBI_GenBank
Match: gi|585105774|gb|EWM24376.1| (tyrosyl-dna phosphodiesterase, partial [Nannochloropsis gaditana])

HSP 1 Score: 699.508 bits (1804), Expect = 0.000e+0
Identity = 337/337 (100.00%), Postives = 337/337 (100.00%), Query Frame = 0
Query:    1 MSSLDGPEDQDKKRRRLVLHLAKSDPLPAAARSLLAPQHSLNTSDHGKCMDENSESIVMTGGIAEKPVHDLTLESDEDDEEQVEVIESPHPRGSGIENGRETAASNPCAAETQSELKKSSKNGAEHANYSSSSGGKVGSSASLPLLPFYLGQVCGLSPEYNAQCLGLEDIFSGAFHRAIVCNYMYEWSFFLETLPRLLSIPWLCIYGDENPSTPQISEAFPNIATFKPRFRNTPFAWGTHHSKMALLLYEGGIRVMICTSNFIEVDWHNKTQGIWVQDFPKLREEDKADDSLFGRDLREYLQALNGFENECGSRGGEGGREGGREGGREGGRRRKDE 337
            MSSLDGPEDQDKKRRRLVLHLAKSDPLPAAARSLLAPQHSLNTSDHGKCMDENSESIVMTGGIAEKPVHDLTLESDEDDEEQVEVIESPHPRGSGIENGRETAASNPCAAETQSELKKSSKNGAEHANYSSSSGGKVGSSASLPLLPFYLGQVCGLSPEYNAQCLGLEDIFSGAFHRAIVCNYMYEWSFFLETLPRLLSIPWLCIYGDENPSTPQISEAFPNIATFKPRFRNTPFAWGTHHSKMALLLYEGGIRVMICTSNFIEVDWHNKTQGIWVQDFPKLREEDKADDSLFGRDLREYLQALNGFENECGSRGGEGGREGGREGGREGGRRRKDE
Sbjct:    1 MSSLDGPEDQDKKRRRLVLHLAKSDPLPAAARSLLAPQHSLNTSDHGKCMDENSESIVMTGGIAEKPVHDLTLESDEDDEEQVEVIESPHPRGSGIENGRETAASNPCAAETQSELKKSSKNGAEHANYSSSSGGKVGSSASLPLLPFYLGQVCGLSPEYNAQCLGLEDIFSGAFHRAIVCNYMYEWSFFLETLPRLLSIPWLCIYGDENPSTPQISEAFPNIATFKPRFRNTPFAWGTHHSKMALLLYEGGIRVMICTSNFIEVDWHNKTQGIWVQDFPKLREEDKADDSLFGRDLREYLQALNGFENECGSRGGEGGREGGREGGREGGRRRKDE 337          
BLAST of EWM24376.1 vs. NCBI_GenBank
Match: gi|553192310|ref|XP_005855549.1| (tyrosyl-dna phosphodiesterase 1, partial [Nannochloropsis gaditana CCMP526] >gi|422293515|gb|EKU20815.1| tyrosyl-dna phosphodiesterase 1, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 157.532 bits (397), Expect = 7.456e-44
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0
Query:  244 MALLLYEGGIRVMICTSNFIEVDWHNKTQGIWVQDFPKLREEDKADDSLFGRDLREYLQALNGFENECGSRG 315
            MALLLYEGGIRVMICTSNFIEVDWHNKTQGIWVQDFPKLREEDKADDSLFGRDLREYLQALNGFENECGSRG
Sbjct:    1 MALLLYEGGIRVMICTSNFIEVDWHNKTQGIWVQDFPKLREEDKADDSLFGRDLREYLQALNGFENECGSRG 72          
BLAST of EWM24376.1 vs. NCBI_GenBank
Match: gi|1191745958|ref|XP_020978975.1| (tyrosyl-DNA phosphodiesterase 1 isoform X2 [Arachis ipaensis])

HSP 1 Score: 117.472 bits (293), Expect = 9.922e-26
Identity = 73/210 (34.76%), Postives = 107/210 (50.95%), Query Frame = 0
Query:   97 ENGRETAASNPCAAETQSELKKSSKNGAEHANYSSSSGGKVGSSASLPLLPFYLGQVCGLSPEYNAQCLGLEDIFSGAFHRAIVCNYMYEWSFFLETLPRLLSIP-WLCIYGDENPSTPQISEAFP-NIATFKPRFRNTPFAWGTHHSKMALLLYEGGIRVMICTSNFIEVDWHNKTQGIWVQDFPKLREEDKADDSLFGRDLREYLQAL 304
            E GR  AA  P  +++            EH+N  +     +  S  +P   F L +V  L P  N  C+ ++D+  G    AI+ NYM +  + +   P LL +P  L I+G+ +     +  + P N    KP     P ++GTHHSK   L+Y  GIRV++ T+N I VDW+NKTQG+W+QDFP   +   +  S+F  DL EYL  L
Sbjct:  151 EQGRNAAARKPGHSQS-----------GEHSNAEAIRNFHI-PSEKIPST-FRLLRVQQLPPWANTSCVAIDDVIQGDILVAILSNYMVDLDWLVPACPALLKVPHVLVIHGESDGRVDYLKRSKPANWILHKPPL---PISFGTHHSKAMFLVYPHGIRVIVHTANLIYVDWNNKTQGLWMQDFPWKDQNSLSKGSVFENDLVEYLSML 344          
BLAST of EWM24376.1 vs. NCBI_GenBank
Match: gi|1193767271|ref|XP_020998070.1| (tyrosyl-DNA phosphodiesterase 1 isoform X2 [Arachis duranensis])

HSP 1 Score: 117.472 bits (293), Expect = 1.071e-25
Identity = 73/210 (34.76%), Postives = 107/210 (50.95%), Query Frame = 0
Query:   97 ENGRETAASNPCAAETQSELKKSSKNGAEHANYSSSSGGKVGSSASLPLLPFYLGQVCGLSPEYNAQCLGLEDIFSGAFHRAIVCNYMYEWSFFLETLPRLLSIP-WLCIYGDENPSTPQISEAFP-NIATFKPRFRNTPFAWGTHHSKMALLLYEGGIRVMICTSNFIEVDWHNKTQGIWVQDFPKLREEDKADDSLFGRDLREYLQAL 304
            E GR  AA  P  +++            EH+N  +     +  S  +P   F L +V  L P  N  C+ ++D+  G    AI+ NYM +  + +   P LL +P  L I+G+ +     +  + P N    KP     P ++GTHHSK   L+Y  GIRV++ T+N I VDW+NKTQG+W+QDFP   +   +  S+F  DL EYL  L
Sbjct:  158 EQGRNAAARKPGHSQS-----------GEHSNAEAIRNFHI-PSEKIPST-FRLLRVQQLPPWANTSCVAIDDVIQGDILVAILSNYMVDLDWLVPACPALLKVPHVLVIHGESDGRVDYLKRSKPTNWILHKPPL---PISFGTHHSKAMFLVYPHGIRVIVHTANLIYVDWNNKTQGLWMQDFPWKDQNSLSKGSVFENDLVEYLSML 351          
BLAST of EWM24376.1 vs. NCBI_GenBank
Match: gi|1012130845|ref|XP_015964886.1| (tyrosyl-DNA phosphodiesterase 1 isoform X1 [Arachis duranensis])

HSP 1 Score: 117.087 bits (292), Expect = 2.520e-25
Identity = 73/210 (34.76%), Postives = 107/210 (50.95%), Query Frame = 0
Query:   97 ENGRETAASNPCAAETQSELKKSSKNGAEHANYSSSSGGKVGSSASLPLLPFYLGQVCGLSPEYNAQCLGLEDIFSGAFHRAIVCNYMYEWSFFLETLPRLLSIP-WLCIYGDENPSTPQISEAFP-NIATFKPRFRNTPFAWGTHHSKMALLLYEGGIRVMICTSNFIEVDWHNKTQGIWVQDFPKLREEDKADDSLFGRDLREYLQAL 304
            E GR  AA  P  +++            EH+N  +     +  S  +P   F L +V  L P  N  C+ ++D+  G    AI+ NYM +  + +   P LL +P  L I+G+ +     +  + P N    KP     P ++GTHHSK   L+Y  GIRV++ T+N I VDW+NKTQG+W+QDFP   +   +  S+F  DL EYL  L
Sbjct:  158 EQGRNAAARKPGHSQS-----------GEHSNAEAIRNFHI-PSEKIPST-FRLLRVQQLPPWANTSCVAIDDVIQGDILVAILSNYMVDLDWLVPACPALLKVPHVLVIHGESDGRVDYLKRSKPTNWILHKPPL---PISFGTHHSKAMFLVYPHGIRVIVHTANLIYVDWNNKTQGLWMQDFPWKDQNSLSKGSVFENDLVEYLSML 351          
BLAST of EWM24376.1 vs. NCBI_GenBank
Match: gi|1021517716|ref|XP_016202362.1| (tyrosyl-DNA phosphodiesterase 1 isoform X1 [Arachis ipaensis])

HSP 1 Score: 117.087 bits (292), Expect = 2.602e-25
Identity = 73/210 (34.76%), Postives = 107/210 (50.95%), Query Frame = 0
Query:   97 ENGRETAASNPCAAETQSELKKSSKNGAEHANYSSSSGGKVGSSASLPLLPFYLGQVCGLSPEYNAQCLGLEDIFSGAFHRAIVCNYMYEWSFFLETLPRLLSIP-WLCIYGDENPSTPQISEAFP-NIATFKPRFRNTPFAWGTHHSKMALLLYEGGIRVMICTSNFIEVDWHNKTQGIWVQDFPKLREEDKADDSLFGRDLREYLQAL 304
            E GR  AA  P  +++            EH+N  +     +  S  +P   F L +V  L P  N  C+ ++D+  G    AI+ NYM +  + +   P LL +P  L I+G+ +     +  + P N    KP     P ++GTHHSK   L+Y  GIRV++ T+N I VDW+NKTQG+W+QDFP   +   +  S+F  DL EYL  L
Sbjct:  151 EQGRNAAARKPGHSQS-----------GEHSNAEAIRNFHI-PSEKIPST-FRLLRVQQLPPWANTSCVAIDDVIQGDILVAILSNYMVDLDWLVPACPALLKVPHVLVIHGESDGRVDYLKRSKPANWILHKPPL---PISFGTHHSKAMFLVYPHGIRVIVHTANLIYVDWNNKTQGLWMQDFPWKDQNSLSKGSVFENDLVEYLSML 344          
BLAST of EWM24376.1 vs. NCBI_GenBank
Match: gi|1175871787|ref|XP_020589644.1| (tyrosyl-DNA phosphodiesterase 1 isoform X1 [Phalaenopsis equestris])

HSP 1 Score: 116.701 bits (291), Expect = 3.717e-25
Identity = 72/196 (36.73%), Postives = 109/196 (55.61%), Query Frame = 0
Query:  112 TQSELKKSSKNGAEHANYSSSSGGKVGSSASLPLLPFYLGQVCGLSPEYNAQC-LGLEDIFSGAFHRAIVCNYMYEWSFFLETLPRLLSIP-WLCIYGDENPSTPQISEAFP-NIATFKPRFRNTPFAWGTHHSKMALLLYEGGIRVMICTSNFIEVDWHNKTQGIWVQDFPKLREEDKADDSLFGRDLREYLQAL 304
            + +E++ SS + AE   +  S         SL L+ F L +V GL PE+  +C + + D+  G    AI+ NYM +  +     P+L  IP  L ++G+       + +  P N    KP     P ++GTHHSK   L+YE G+R++I ++N I VDW+NKTQG+W+QDFP    ++  + SLF RDL +YL AL
Sbjct:  187 SDAEIRVSSNSVAEFNKFDVSED-------SLSLV-FRLMRVEGL-PEWANECSIAINDVIEGNILVAILSNYMVDIDWLKTACPKLWQIPHVLIVHGESGSRVDDLQKKKPVNWVLHKPPL---PISYGTHHSKAIFLVYEKGVRIIIHSANLIYVDWNNKTQGLWMQDFPCKNVKNLCESSLFERDLIDYLSAL 370          
BLAST of EWM24376.1 vs. NCBI_GenBank
Match: gi|1175871789|ref|XP_020589645.1| (tyrosyl-DNA phosphodiesterase 1 isoform X2 [Phalaenopsis equestris])

HSP 1 Score: 116.316 bits (290), Expect = 4.174e-25
Identity = 72/196 (36.73%), Postives = 109/196 (55.61%), Query Frame = 0
Query:  112 TQSELKKSSKNGAEHANYSSSSGGKVGSSASLPLLPFYLGQVCGLSPEYNAQC-LGLEDIFSGAFHRAIVCNYMYEWSFFLETLPRLLSIP-WLCIYGDENPSTPQISEAFP-NIATFKPRFRNTPFAWGTHHSKMALLLYEGGIRVMICTSNFIEVDWHNKTQGIWVQDFPKLREEDKADDSLFGRDLREYLQAL 304
            + +E++ SS + AE   +  S         SL L+ F L +V GL PE+  +C + + D+  G    AI+ NYM +  +     P+L  IP  L ++G+       + +  P N    KP     P ++GTHHSK   L+YE G+R++I ++N I VDW+NKTQG+W+QDFP    ++  + SLF RDL +YL AL
Sbjct:  187 SDAEIRVSSNSVAEFNKFDVSED-------SLSLV-FRLMRVEGL-PEWANECSIAINDVIEGNILVAILSNYMVDIDWLKTACPKLWQIPHVLIVHGESGSRVDDLQKKKPVNWVLHKPPL---PISYGTHHSKAIFLVYEKGVRIIIHSANLIYVDWNNKTQGLWMQDFPCKNVKNLCESSLFERDLIDYLSAL 370          
BLAST of EWM24376.1 vs. NCBI_GenBank
Match: gi|1173149257|ref|XP_020517688.1| (tyrosyl-DNA phosphodiesterase 1 isoform X2 [Amborella trichopoda])

HSP 1 Score: 115.931 bits (289), Expect = 4.572e-25
Identity = 80/235 (34.04%), Postives = 115/235 (48.94%), Query Frame = 0
Query:   72 TLESDEDDEEQVEVIESPHPRGSGIENGRETAASNPCAAETQSELKKSSKNGAEHANYSSSSGGKVGSSASLPLLPFYLGQVCGLSPEYNAQCLGLEDIFSGAFHRAIVCNYMYEWSFFLETLPRLLSIP-WLCIYGDENPSTPQISEAFPNIATF-KPRFRNTPFAWGTHHSKMALLLYEGGIRVMICTSNFIEVDWHNKTQGIWVQDFPKLREEDKADDSLFGRDLREYLQAL 304
            T++    D E  E ++   P     E   ++   N      QS  KK  K  A   +  +     V     LPL  F L QV GL    N   + + D+  G    AI+ NYM +  + L   P L  I   L ++G+   +  Q+S+  P+     KP     P ++GTHHSK  +L+Y  G+R+++ T+N I VDW+NKTQG+W+QDFP   E+D    S F  DL EYL+AL
Sbjct:  186 TVKRKWQDPEHEEFVQDEVPNKLSTEAVNKSVTVN----SGQSGYKKLKKESASIDSLEAICQFNVQRD-KLPL-TFRLLQVQGLPEWANTSSVKIRDVIQGNVLFAILSNYMVDLDWLLSACPMLKRISHVLVVHGESGGALDQMSKTKPSSWILHKPPL---PISYGTHHSKAMILVYPRGVRIVVHTANLIYVDWNNKTQGLWMQDFPWKDEKDLNKQSAFENDLVEYLEAL 411          
BLAST of EWM24376.1 vs. NCBI_GenBank
Match: gi|548835887|gb|ERM97494.1| (hypothetical protein AMTR_s00125p00107750 [Amborella trichopoda])

HSP 1 Score: 115.931 bits (289), Expect = 4.686e-25
Identity = 80/235 (34.04%), Postives = 115/235 (48.94%), Query Frame = 0
Query:   72 TLESDEDDEEQVEVIESPHPRGSGIENGRETAASNPCAAETQSELKKSSKNGAEHANYSSSSGGKVGSSASLPLLPFYLGQVCGLSPEYNAQCLGLEDIFSGAFHRAIVCNYMYEWSFFLETLPRLLSIP-WLCIYGDENPSTPQISEAFPNIATF-KPRFRNTPFAWGTHHSKMALLLYEGGIRVMICTSNFIEVDWHNKTQGIWVQDFPKLREEDKADDSLFGRDLREYLQAL 304
            T++    D E  E ++   P     E   ++   N      QS  KK  K  A   +  +     V     LPL  F L QV GL    N   + + D+  G    AI+ NYM +  + L   P L  I   L ++G+   +  Q+S+  P+     KP     P ++GTHHSK  +L+Y  G+R+++ T+N I VDW+NKTQG+W+QDFP   E+D    S F  DL EYL+AL
Sbjct:  142 TVKRKWQDPEHEEFVQDEVPNKLSTEAVNKSVTVN----SGQSGYKKLKKESASIDSLEAICQFNVQRD-KLPL-TFRLLQVQGLPEWANTSSVKIRDVIQGNVLFAILSNYMVDLDWLLSACPMLKRISHVLVVHGESGGALDQMSKTKPSSWILHKPPL---PISYGTHHSKAMILVYPRGVRIVVHTANLIYVDWNNKTQGLWMQDFPWKDEKDLNKQSAFENDLVEYLEAL 367          
The following BLAST results are available for this feature:
BLAST of EWM24376.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105774|gb|EWM24376.1|0.000e+0100.00tyrosyl-dna phosphodiesterase, partial [Nannochlor... [more]
gi|553192310|ref|XP_005855549.1|7.456e-44100.00tyrosyl-dna phosphodiesterase 1, partial [Nannochl... [more]
gi|1191745958|ref|XP_020978975.1|9.922e-2634.76tyrosyl-DNA phosphodiesterase 1 isoform X2 [Arachi... [more]
gi|1193767271|ref|XP_020998070.1|1.071e-2534.76tyrosyl-DNA phosphodiesterase 1 isoform X2 [Arachi... [more]
gi|1012130845|ref|XP_015964886.1|2.520e-2534.76tyrosyl-DNA phosphodiesterase 1 isoform X1 [Arachi... [more]
gi|1021517716|ref|XP_016202362.1|2.602e-2534.76tyrosyl-DNA phosphodiesterase 1 isoform X1 [Arachi... [more]
gi|1175871787|ref|XP_020589644.1|3.717e-2536.73tyrosyl-DNA phosphodiesterase 1 isoform X1 [Phalae... [more]
gi|1175871789|ref|XP_020589645.1|4.174e-2536.73tyrosyl-DNA phosphodiesterase 1 isoform X2 [Phalae... [more]
gi|1173149257|ref|XP_020517688.1|4.572e-2534.04tyrosyl-DNA phosphodiesterase 1 isoform X2 [Ambore... [more]
gi|548835887|gb|ERM97494.1|4.686e-2534.04hypothetical protein AMTR_s00125p00107750 [Amborel... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6305rna6305Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications