EWM24376.1, cds6290 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24376.1 vs. NCBI_GenBank
Match: gi|585105774|gb|EWM24376.1| (tyrosyl-dna phosphodiesterase, partial [Nannochloropsis gaditana]) HSP 1 Score: 699.508 bits (1804), Expect = 0.000e+0 Identity = 337/337 (100.00%), Postives = 337/337 (100.00%), Query Frame = 0 Query: 1 MSSLDGPEDQDKKRRRLVLHLAKSDPLPAAARSLLAPQHSLNTSDHGKCMDENSESIVMTGGIAEKPVHDLTLESDEDDEEQVEVIESPHPRGSGIENGRETAASNPCAAETQSELKKSSKNGAEHANYSSSSGGKVGSSASLPLLPFYLGQVCGLSPEYNAQCLGLEDIFSGAFHRAIVCNYMYEWSFFLETLPRLLSIPWLCIYGDENPSTPQISEAFPNIATFKPRFRNTPFAWGTHHSKMALLLYEGGIRVMICTSNFIEVDWHNKTQGIWVQDFPKLREEDKADDSLFGRDLREYLQALNGFENECGSRGGEGGREGGREGGREGGRRRKDE 337 MSSLDGPEDQDKKRRRLVLHLAKSDPLPAAARSLLAPQHSLNTSDHGKCMDENSESIVMTGGIAEKPVHDLTLESDEDDEEQVEVIESPHPRGSGIENGRETAASNPCAAETQSELKKSSKNGAEHANYSSSSGGKVGSSASLPLLPFYLGQVCGLSPEYNAQCLGLEDIFSGAFHRAIVCNYMYEWSFFLETLPRLLSIPWLCIYGDENPSTPQISEAFPNIATFKPRFRNTPFAWGTHHSKMALLLYEGGIRVMICTSNFIEVDWHNKTQGIWVQDFPKLREEDKADDSLFGRDLREYLQALNGFENECGSRGGEGGREGGREGGREGGRRRKDE Sbjct: 1 MSSLDGPEDQDKKRRRLVLHLAKSDPLPAAARSLLAPQHSLNTSDHGKCMDENSESIVMTGGIAEKPVHDLTLESDEDDEEQVEVIESPHPRGSGIENGRETAASNPCAAETQSELKKSSKNGAEHANYSSSSGGKVGSSASLPLLPFYLGQVCGLSPEYNAQCLGLEDIFSGAFHRAIVCNYMYEWSFFLETLPRLLSIPWLCIYGDENPSTPQISEAFPNIATFKPRFRNTPFAWGTHHSKMALLLYEGGIRVMICTSNFIEVDWHNKTQGIWVQDFPKLREEDKADDSLFGRDLREYLQALNGFENECGSRGGEGGREGGREGGREGGRRRKDE 337
BLAST of EWM24376.1 vs. NCBI_GenBank
Match: gi|553192310|ref|XP_005855549.1| (tyrosyl-dna phosphodiesterase 1, partial [Nannochloropsis gaditana CCMP526] >gi|422293515|gb|EKU20815.1| tyrosyl-dna phosphodiesterase 1, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 157.532 bits (397), Expect = 7.456e-44 Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0 Query: 244 MALLLYEGGIRVMICTSNFIEVDWHNKTQGIWVQDFPKLREEDKADDSLFGRDLREYLQALNGFENECGSRG 315 MALLLYEGGIRVMICTSNFIEVDWHNKTQGIWVQDFPKLREEDKADDSLFGRDLREYLQALNGFENECGSRG Sbjct: 1 MALLLYEGGIRVMICTSNFIEVDWHNKTQGIWVQDFPKLREEDKADDSLFGRDLREYLQALNGFENECGSRG 72
BLAST of EWM24376.1 vs. NCBI_GenBank
Match: gi|1191745958|ref|XP_020978975.1| (tyrosyl-DNA phosphodiesterase 1 isoform X2 [Arachis ipaensis]) HSP 1 Score: 117.472 bits (293), Expect = 9.922e-26 Identity = 73/210 (34.76%), Postives = 107/210 (50.95%), Query Frame = 0 Query: 97 ENGRETAASNPCAAETQSELKKSSKNGAEHANYSSSSGGKVGSSASLPLLPFYLGQVCGLSPEYNAQCLGLEDIFSGAFHRAIVCNYMYEWSFFLETLPRLLSIP-WLCIYGDENPSTPQISEAFP-NIATFKPRFRNTPFAWGTHHSKMALLLYEGGIRVMICTSNFIEVDWHNKTQGIWVQDFPKLREEDKADDSLFGRDLREYLQAL 304 E GR AA P +++ EH+N + + S +P F L +V L P N C+ ++D+ G AI+ NYM + + + P LL +P L I+G+ + + + P N KP P ++GTHHSK L+Y GIRV++ T+N I VDW+NKTQG+W+QDFP + + S+F DL EYL L Sbjct: 151 EQGRNAAARKPGHSQS-----------GEHSNAEAIRNFHI-PSEKIPST-FRLLRVQQLPPWANTSCVAIDDVIQGDILVAILSNYMVDLDWLVPACPALLKVPHVLVIHGESDGRVDYLKRSKPANWILHKPPL---PISFGTHHSKAMFLVYPHGIRVIVHTANLIYVDWNNKTQGLWMQDFPWKDQNSLSKGSVFENDLVEYLSML 344
BLAST of EWM24376.1 vs. NCBI_GenBank
Match: gi|1193767271|ref|XP_020998070.1| (tyrosyl-DNA phosphodiesterase 1 isoform X2 [Arachis duranensis]) HSP 1 Score: 117.472 bits (293), Expect = 1.071e-25 Identity = 73/210 (34.76%), Postives = 107/210 (50.95%), Query Frame = 0 Query: 97 ENGRETAASNPCAAETQSELKKSSKNGAEHANYSSSSGGKVGSSASLPLLPFYLGQVCGLSPEYNAQCLGLEDIFSGAFHRAIVCNYMYEWSFFLETLPRLLSIP-WLCIYGDENPSTPQISEAFP-NIATFKPRFRNTPFAWGTHHSKMALLLYEGGIRVMICTSNFIEVDWHNKTQGIWVQDFPKLREEDKADDSLFGRDLREYLQAL 304 E GR AA P +++ EH+N + + S +P F L +V L P N C+ ++D+ G AI+ NYM + + + P LL +P L I+G+ + + + P N KP P ++GTHHSK L+Y GIRV++ T+N I VDW+NKTQG+W+QDFP + + S+F DL EYL L Sbjct: 158 EQGRNAAARKPGHSQS-----------GEHSNAEAIRNFHI-PSEKIPST-FRLLRVQQLPPWANTSCVAIDDVIQGDILVAILSNYMVDLDWLVPACPALLKVPHVLVIHGESDGRVDYLKRSKPTNWILHKPPL---PISFGTHHSKAMFLVYPHGIRVIVHTANLIYVDWNNKTQGLWMQDFPWKDQNSLSKGSVFENDLVEYLSML 351
BLAST of EWM24376.1 vs. NCBI_GenBank
Match: gi|1012130845|ref|XP_015964886.1| (tyrosyl-DNA phosphodiesterase 1 isoform X1 [Arachis duranensis]) HSP 1 Score: 117.087 bits (292), Expect = 2.520e-25 Identity = 73/210 (34.76%), Postives = 107/210 (50.95%), Query Frame = 0 Query: 97 ENGRETAASNPCAAETQSELKKSSKNGAEHANYSSSSGGKVGSSASLPLLPFYLGQVCGLSPEYNAQCLGLEDIFSGAFHRAIVCNYMYEWSFFLETLPRLLSIP-WLCIYGDENPSTPQISEAFP-NIATFKPRFRNTPFAWGTHHSKMALLLYEGGIRVMICTSNFIEVDWHNKTQGIWVQDFPKLREEDKADDSLFGRDLREYLQAL 304 E GR AA P +++ EH+N + + S +P F L +V L P N C+ ++D+ G AI+ NYM + + + P LL +P L I+G+ + + + P N KP P ++GTHHSK L+Y GIRV++ T+N I VDW+NKTQG+W+QDFP + + S+F DL EYL L Sbjct: 158 EQGRNAAARKPGHSQS-----------GEHSNAEAIRNFHI-PSEKIPST-FRLLRVQQLPPWANTSCVAIDDVIQGDILVAILSNYMVDLDWLVPACPALLKVPHVLVIHGESDGRVDYLKRSKPTNWILHKPPL---PISFGTHHSKAMFLVYPHGIRVIVHTANLIYVDWNNKTQGLWMQDFPWKDQNSLSKGSVFENDLVEYLSML 351
BLAST of EWM24376.1 vs. NCBI_GenBank
Match: gi|1021517716|ref|XP_016202362.1| (tyrosyl-DNA phosphodiesterase 1 isoform X1 [Arachis ipaensis]) HSP 1 Score: 117.087 bits (292), Expect = 2.602e-25 Identity = 73/210 (34.76%), Postives = 107/210 (50.95%), Query Frame = 0 Query: 97 ENGRETAASNPCAAETQSELKKSSKNGAEHANYSSSSGGKVGSSASLPLLPFYLGQVCGLSPEYNAQCLGLEDIFSGAFHRAIVCNYMYEWSFFLETLPRLLSIP-WLCIYGDENPSTPQISEAFP-NIATFKPRFRNTPFAWGTHHSKMALLLYEGGIRVMICTSNFIEVDWHNKTQGIWVQDFPKLREEDKADDSLFGRDLREYLQAL 304 E GR AA P +++ EH+N + + S +P F L +V L P N C+ ++D+ G AI+ NYM + + + P LL +P L I+G+ + + + P N KP P ++GTHHSK L+Y GIRV++ T+N I VDW+NKTQG+W+QDFP + + S+F DL EYL L Sbjct: 151 EQGRNAAARKPGHSQS-----------GEHSNAEAIRNFHI-PSEKIPST-FRLLRVQQLPPWANTSCVAIDDVIQGDILVAILSNYMVDLDWLVPACPALLKVPHVLVIHGESDGRVDYLKRSKPANWILHKPPL---PISFGTHHSKAMFLVYPHGIRVIVHTANLIYVDWNNKTQGLWMQDFPWKDQNSLSKGSVFENDLVEYLSML 344
BLAST of EWM24376.1 vs. NCBI_GenBank
Match: gi|1175871787|ref|XP_020589644.1| (tyrosyl-DNA phosphodiesterase 1 isoform X1 [Phalaenopsis equestris]) HSP 1 Score: 116.701 bits (291), Expect = 3.717e-25 Identity = 72/196 (36.73%), Postives = 109/196 (55.61%), Query Frame = 0 Query: 112 TQSELKKSSKNGAEHANYSSSSGGKVGSSASLPLLPFYLGQVCGLSPEYNAQC-LGLEDIFSGAFHRAIVCNYMYEWSFFLETLPRLLSIP-WLCIYGDENPSTPQISEAFP-NIATFKPRFRNTPFAWGTHHSKMALLLYEGGIRVMICTSNFIEVDWHNKTQGIWVQDFPKLREEDKADDSLFGRDLREYLQAL 304 + +E++ SS + AE + S SL L+ F L +V GL PE+ +C + + D+ G AI+ NYM + + P+L IP L ++G+ + + P N KP P ++GTHHSK L+YE G+R++I ++N I VDW+NKTQG+W+QDFP ++ + SLF RDL +YL AL Sbjct: 187 SDAEIRVSSNSVAEFNKFDVSED-------SLSLV-FRLMRVEGL-PEWANECSIAINDVIEGNILVAILSNYMVDIDWLKTACPKLWQIPHVLIVHGESGSRVDDLQKKKPVNWVLHKPPL---PISYGTHHSKAIFLVYEKGVRIIIHSANLIYVDWNNKTQGLWMQDFPCKNVKNLCESSLFERDLIDYLSAL 370
BLAST of EWM24376.1 vs. NCBI_GenBank
Match: gi|1175871789|ref|XP_020589645.1| (tyrosyl-DNA phosphodiesterase 1 isoform X2 [Phalaenopsis equestris]) HSP 1 Score: 116.316 bits (290), Expect = 4.174e-25 Identity = 72/196 (36.73%), Postives = 109/196 (55.61%), Query Frame = 0 Query: 112 TQSELKKSSKNGAEHANYSSSSGGKVGSSASLPLLPFYLGQVCGLSPEYNAQC-LGLEDIFSGAFHRAIVCNYMYEWSFFLETLPRLLSIP-WLCIYGDENPSTPQISEAFP-NIATFKPRFRNTPFAWGTHHSKMALLLYEGGIRVMICTSNFIEVDWHNKTQGIWVQDFPKLREEDKADDSLFGRDLREYLQAL 304 + +E++ SS + AE + S SL L+ F L +V GL PE+ +C + + D+ G AI+ NYM + + P+L IP L ++G+ + + P N KP P ++GTHHSK L+YE G+R++I ++N I VDW+NKTQG+W+QDFP ++ + SLF RDL +YL AL Sbjct: 187 SDAEIRVSSNSVAEFNKFDVSED-------SLSLV-FRLMRVEGL-PEWANECSIAINDVIEGNILVAILSNYMVDIDWLKTACPKLWQIPHVLIVHGESGSRVDDLQKKKPVNWVLHKPPL---PISYGTHHSKAIFLVYEKGVRIIIHSANLIYVDWNNKTQGLWMQDFPCKNVKNLCESSLFERDLIDYLSAL 370
BLAST of EWM24376.1 vs. NCBI_GenBank
Match: gi|1173149257|ref|XP_020517688.1| (tyrosyl-DNA phosphodiesterase 1 isoform X2 [Amborella trichopoda]) HSP 1 Score: 115.931 bits (289), Expect = 4.572e-25 Identity = 80/235 (34.04%), Postives = 115/235 (48.94%), Query Frame = 0 Query: 72 TLESDEDDEEQVEVIESPHPRGSGIENGRETAASNPCAAETQSELKKSSKNGAEHANYSSSSGGKVGSSASLPLLPFYLGQVCGLSPEYNAQCLGLEDIFSGAFHRAIVCNYMYEWSFFLETLPRLLSIP-WLCIYGDENPSTPQISEAFPNIATF-KPRFRNTPFAWGTHHSKMALLLYEGGIRVMICTSNFIEVDWHNKTQGIWVQDFPKLREEDKADDSLFGRDLREYLQAL 304 T++ D E E ++ P E ++ N QS KK K A + + V LPL F L QV GL N + + D+ G AI+ NYM + + L P L I L ++G+ + Q+S+ P+ KP P ++GTHHSK +L+Y G+R+++ T+N I VDW+NKTQG+W+QDFP E+D S F DL EYL+AL Sbjct: 186 TVKRKWQDPEHEEFVQDEVPNKLSTEAVNKSVTVN----SGQSGYKKLKKESASIDSLEAICQFNVQRD-KLPL-TFRLLQVQGLPEWANTSSVKIRDVIQGNVLFAILSNYMVDLDWLLSACPMLKRISHVLVVHGESGGALDQMSKTKPSSWILHKPPL---PISYGTHHSKAMILVYPRGVRIVVHTANLIYVDWNNKTQGLWMQDFPWKDEKDLNKQSAFENDLVEYLEAL 411
BLAST of EWM24376.1 vs. NCBI_GenBank
Match: gi|548835887|gb|ERM97494.1| (hypothetical protein AMTR_s00125p00107750 [Amborella trichopoda]) HSP 1 Score: 115.931 bits (289), Expect = 4.686e-25 Identity = 80/235 (34.04%), Postives = 115/235 (48.94%), Query Frame = 0 Query: 72 TLESDEDDEEQVEVIESPHPRGSGIENGRETAASNPCAAETQSELKKSSKNGAEHANYSSSSGGKVGSSASLPLLPFYLGQVCGLSPEYNAQCLGLEDIFSGAFHRAIVCNYMYEWSFFLETLPRLLSIP-WLCIYGDENPSTPQISEAFPNIATF-KPRFRNTPFAWGTHHSKMALLLYEGGIRVMICTSNFIEVDWHNKTQGIWVQDFPKLREEDKADDSLFGRDLREYLQAL 304 T++ D E E ++ P E ++ N QS KK K A + + V LPL F L QV GL N + + D+ G AI+ NYM + + L P L I L ++G+ + Q+S+ P+ KP P ++GTHHSK +L+Y G+R+++ T+N I VDW+NKTQG+W+QDFP E+D S F DL EYL+AL Sbjct: 142 TVKRKWQDPEHEEFVQDEVPNKLSTEAVNKSVTVN----SGQSGYKKLKKESASIDSLEAICQFNVQRD-KLPL-TFRLLQVQGLPEWANTSSVKIRDVIQGNVLFAILSNYMVDLDWLLSACPMLKRISHVLVVHGESGGALDQMSKTKPSSWILHKPPL---PISYGTHHSKAMILVYPRGVRIVVHTANLIYVDWNNKTQGLWMQDFPWKDEKDLNKQSAFENDLVEYLEAL 367 The following BLAST results are available for this feature:
BLAST of EWM24376.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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