EWM24387.1, cds6289 (CDS) Nannochloropsis gaditana

Overview
NameEWM24387.1
Unique Namecds6289
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:208573..209352 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24387.1
Productputative ras family gtp binding protein
Orig transcript idgnl|cribi|Naga_100508g2.5689.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:208573..209352 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0000166nucleotide binding
GO:0005525GTP binding
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0015031protein transport
GO:0007165signal transduction
GO:0007264small GTPase mediated signal transduction
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR003579Small_GTPase_Rab_type
IPR020849Small_GTPase_Ras
IPR001806Small_GTPase
Homology
BLAST of EWM24387.1 vs. NCBI_GenBank
Match: gi|585105787|gb|EWM24387.1| (putative ras family gtp binding protein [Nannochloropsis gaditana])

HSP 1 Score: 527.324 bits (1357), Expect = 0.000e+0
Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 0
Query:    1 MPPSSTSPRPPPSLRPPPLLGVVHRKFAVVGHRGAGKSSVTRRFVQEKFTIQSAADPDEESLYRKVLETEGEERGVAKRKSSHEKTTQLVCCDIVDTPGPTRQYTEYAKEEFSRFLSRNALIGIHGYLLVYDITSRESFTIIQTLNEVVLRYHGDSPVPRVLLGGKLDLCAQRQVGKGEGRALARTLGIPFLEISAKHNVDVERAFRLLLEEVERGEAGEGKGKWSLLGGEEEEQAFLGCRHERERSWEYDGYGYCVVS 259
            MPPSSTSPRPPPSLRPPPLLGVVHRKFAVVGHRGAGKSSVTRRFVQEKFTIQSAADPDEESLYRKVLETEGEERGVAKRKSSHEKTTQLVCCDIVDTPGPTRQYTEYAKEEFSRFLSRNALIGIHGYLLVYDITSRESFTIIQTLNEVVLRYHGDSPVPRVLLGGKLDLCAQRQVGKGEGRALARTLGIPFLEISAKHNVDVERAFRLLLEEVERGEAGEGKGKWSLLGGEEEEQAFLGCRHERERSWEYDGYGYCVVS
Sbjct:    1 MPPSSTSPRPPPSLRPPPLLGVVHRKFAVVGHRGAGKSSVTRRFVQEKFTIQSAADPDEESLYRKVLETEGEERGVAKRKSSHEKTTQLVCCDIVDTPGPTRQYTEYAKEEFSRFLSRNALIGIHGYLLVYDITSRESFTIIQTLNEVVLRYHGDSPVPRVLLGGKLDLCAQRQVGKGEGRALARTLGIPFLEISAKHNVDVERAFRLLLEEVERGEAGEGKGKWSLLGGEEEEQAFLGCRHERERSWEYDGYGYCVVS 259          
BLAST of EWM24387.1 vs. NCBI_GenBank
Match: gi|553192305|ref|XP_005855548.1| (Ras-like protein [Nannochloropsis gaditana CCMP526] >gi|422293514|gb|EKU20814.1| Ras-like protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 523.857 bits (1348), Expect = 0.000e+0
Identity = 257/259 (99.23%), Postives = 258/259 (99.61%), Query Frame = 0
Query:    1 MPPSSTSPRPPPSLRPPPLLGVVHRKFAVVGHRGAGKSSVTRRFVQEKFTIQSAADPDEESLYRKVLETEGEERGVAKRKSSHEKTTQLVCCDIVDTPGPTRQYTEYAKEEFSRFLSRNALIGIHGYLLVYDITSRESFTIIQTLNEVVLRYHGDSPVPRVLLGGKLDLCAQRQVGKGEGRALARTLGIPFLEISAKHNVDVERAFRLLLEEVERGEAGEGKGKWSLLGGEEEEQAFLGCRHERERSWEYDGYGYCVVS 259
            MPPSSTSPRPPPSLRPPPLLGVVHRKFAVVGHRGAGKSSVTRRFVQEKFTIQSAADPDEESLYRKVLETEGEERGVAK KSSHEKTTQLVCCDIVDTPGPTRQYTEYAKEEFSRFLSRNALIGIHGYLLVYDITSRESFTIIQTLNEVVLRYHGDSPVPRVLLGGKLDLCAQRQVGKGEGRALARTLGIPFLEISAKHNVDVERAFR+LLEEVERGEAGEGKGKWSLLGGEEEEQAFLGCRHERERSWEYDGYGYCVVS
Sbjct:    1 MPPSSTSPRPPPSLRPPPLLGVVHRKFAVVGHRGAGKSSVTRRFVQEKFTIQSAADPDEESLYRKVLETEGEERGVAKGKSSHEKTTQLVCCDIVDTPGPTRQYTEYAKEEFSRFLSRNALIGIHGYLLVYDITSRESFTIIQTLNEVVLRYHGDSPVPRVLLGGKLDLCAQRQVGKGEGRALARTLGIPFLEISAKHNVDVERAFRMLLEEVERGEAGEGKGKWSLLGGEEEEQAFLGCRHERERSWEYDGYGYCVVS 259          
BLAST of EWM24387.1 vs. NCBI_GenBank
Match: gi|1129841221|emb|SHO79307.1| (Similar to S.cerevisiae protein RHB1 (Putative Rheb-related GTPase) [Malassezia sympodialis ATCC 42132])

HSP 1 Score: 142.124 bits (357), Expect = 1.546e-38
Identity = 82/197 (41.62%), Postives = 118/197 (59.90%), Query Frame = 0
Query:   25 RKFAVVGHRGAGKSSVTRRFVQEKFTIQSAADPDEESLYRKVLETEGEERGVAKRKSSHEKTTQLVCCDIVDTPGPTRQYTEYAKEEFSRFLSRNALIGIHGYLLVYDITSRESFTIIQTLNEVVLRYHGDSPVPRVLLGGKLDLCAQRQVGKGEGRALARTLGIPFLEISAKHNVDVERAFRLLLEEVERGEAGEG 221
            RK AV+G R  GKSS+  RFV++ F    +  P  E+++ K ++ +G+E                  CDIVDT G         ++E+S   S++A IGIHGY+LVY I SR SF +IQT+ + +L Y G S +P VL+G K DL AQRQV + EG+ALA++L   ++E SA+HN +V + F L+L E+E+  A  G
Sbjct:   10 RKIAVLGSRSVGKSSLVVRFVEDAFV--DSYYPTIENVFEKTVKYKGQEYN----------------CDIVDTAG---------QDEYSILNSKHA-IGIHGYVLVYSIASRASFEMIQTVYDKILNYTGTSTIPCVLVGQKSDLHAQRQVPEAEGKALAQSLHCAWVEASARHNANVTKVFELVLAEIEKASAPGG 178          
BLAST of EWM24387.1 vs. NCBI_GenBank
Match: gi|164655341|ref|XP_001728801.1| (hypothetical protein MGL_4136 [Malassezia globosa CBS 7966] >gi|159102685|gb|EDP41587.1| hypothetical protein MGL_4136 [Malassezia globosa CBS 7966])

HSP 1 Score: 139.428 bits (350), Expect = 2.517e-37
Identity = 79/194 (40.72%), Postives = 116/194 (59.79%), Query Frame = 0
Query:   25 RKFAVVGHRGAGKSSVTRRFVQEKFTIQSAADPDEESLYRKVLETEGEERGVAKRKSSHEKTTQLVCCDIVDTPGPTRQYTEYAKEEFSRFLSRNALIGIHGYLLVYDITSRESFTIIQTLNEVVLRYHGDSPVPRVLLGGKLDLCAQRQVGKGEGRALARTLGIPFLEISAKHNVDVERAFRLLLEEVERGEA 218
            RK AV+G R  GKSS+  RFV++ F    +  P  E+++ K ++  G++                  CDIVDT G         ++E+S   S++A IGIHGY+LVY I SR SF +IQT+ + +L Y G S VP VL+G K DL +QRQV + EG+ALA++L   ++E SA+HN +V + F L+L E+E+  +
Sbjct:   13 RKIAVLGSRSVGKSSLVVRFVEDAFV--DSYYPTIENVFEKTVKHRGQDFQ----------------CDIVDTAG---------QDEYSILNSKHA-IGIHGYVLVYSIASRTSFEMIQTVYDKILNYTGTSTVPCVLVGQKSDLHSQRQVSEAEGKALAQSLHCAWIETSARHNANVAKVFELVLAEIEKASS 178          
BLAST of EWM24387.1 vs. NCBI_GenBank
Match: gi|1063861338|ref|XP_017991147.1| (rheb gtpase rhb1 [Malassezia pachydermatis] >gi|924815379|gb|KOS13515.1| rheb gtpase rhb1 [Malassezia pachydermatis])

HSP 1 Score: 138.658 bits (348), Expect = 4.958e-37
Identity = 78/198 (39.39%), Postives = 117/198 (59.09%), Query Frame = 0
Query:   25 RKFAVVGHRGAGKSSVTRRFVQEKFTIQSAADPDEESLYRKVLETEGEERGVAKRKSSHEKTTQLVCCDIVDTPGPTRQYTEYAKEEFSRFLSRNALIGIHGYLLVYDITSRESFTIIQTLNEVVLRYHGDSPVPRVLLGGKLDLCAQRQVGKGEGRALARTLGIPFLEISAKHNVDVERAFRLLLEEVERGEAGEGK 222
            RK AV+G R  GKSS+  R+V++ F    +  P  E+++ K ++ +G+E                  CDIVDT G         ++E+S   S++A IGIHGY+LVY I SR SF +IQT+ + +L Y G S +P VL+G K DL + RQV + EG+ LA++L   ++E SA+HN +V + F L+L E+E+  A  G+
Sbjct:   13 RKIAVLGSRSVGKSSLVVRYVEDAFV--DSYYPTIENVFEKTIKYKGQEYS----------------CDIVDTAG---------QDEYSILNSKHA-IGIHGYVLVYSIASRASFEMIQTVYDKILNYTGTSTIPCVLVGQKSDLHSHRQVSEAEGKELAQSLHCAWIETSARHNANVAKVFELVLAEIEKASAPGGQ 182          
BLAST of EWM24387.1 vs. NCBI_GenBank
Match: gi|630968084|ref|XP_007880450.1| (hypothetical protein PFL1_04731 [Anthracocystis flocculosa PF-1] >gi|521583830|gb|EPQ27593.1| hypothetical protein PFL1_04731 [Anthracocystis flocculosa PF-1])

HSP 1 Score: 137.117 bits (344), Expect = 2.022e-36
Identity = 76/192 (39.58%), Postives = 114/192 (59.38%), Query Frame = 0
Query:   25 RKFAVVGHRGAGKSSVTRRFVQEKFTIQSAADPDEESLYRKVLETEGEERGVAKRKSSHEKTTQLVCCDIVDTPGPTRQYTEYAKEEFSRFLSRNALIGIHGYLLVYDITSRESFTIIQTLNEVVLRYHGDSPVPRVLLGGKLDLCAQRQVGKGEGRALARTLGIPFLEISAKHNVDVERAFRLLLEEVERG 216
            RK AV+G R  GKSS+  R+V++ F    A  P  E++++KV+  +G+E                  CDI+DT G         ++E+S   S++A IGIHGY+LVY I SR SF +IQT+ + +L Y G   VP V++G K DL  QRQV + +G+AL++ L   ++E SA+HN +V + F L+L + E+G
Sbjct:   14 RKIAVLGSRSVGKSSLIVRYVEDAFV--DAYYPTIENIFQKVITYKGQEYD----------------CDIIDTAG---------QDEYSILNSKHA-IGIHGYVLVYSIASRNSFEMIQTVYDKILNYTGTEHVPCVIVGQKSDLHVQRQVSEADGKALSQQLQCAWIETSARHNANVAKVFELMLSQTEKG 177          
BLAST of EWM24387.1 vs. NCBI_GenBank
Match: gi|673529330|emb|CDI55593.1| (probable ras-related GTP-binding protein [Melanopsichium pennsylvanicum 4])

HSP 1 Score: 136.732 bits (343), Expect = 2.743e-36
Identity = 75/192 (39.06%), Postives = 113/192 (58.85%), Query Frame = 0
Query:   25 RKFAVVGHRGAGKSSVTRRFVQEKFTIQSAADPDEESLYRKVLETEGEERGVAKRKSSHEKTTQLVCCDIVDTPGPTRQYTEYAKEEFSRFLSRNALIGIHGYLLVYDITSRESFTIIQTLNEVVLRYHGDSPVPRVLLGGKLDLCAQRQVGKGEGRALARTLGIPFLEISAKHNVDVERAFRLLLEEVERG 216
            RK AV+G R  GKSS+  R+V++ F    +  P  E++++K +  +G+E                  CDI+DT G         ++E+S   S++A IGIHGY+LVY I SR SF ++QT+++ +L Y G   VP V++G K DL  QRQV + EG+ LA  L   ++E+SA+HN +V RAF  +L E ++G
Sbjct:   13 RKIAVLGSRSVGKSSLIVRYVEDAFV--DSYYPTIENIFQKTITHKGQEYD----------------CDIIDTAG---------QDEYSILNSKHA-IGIHGYMLVYSIASRNSFDMVQTVHDKILNYTGTESVPCVIVGQKSDLHVQRQVSEAEGKQLANQLKAAWIEVSARHNANVARAFEAMLGETDKG 176          
BLAST of EWM24387.1 vs. NCBI_GenBank
Match: gi|343426019|emb|CBQ69551.1| (probable ras-related GTP-binding protein [Sporisorium reilianum SRZ2])

HSP 1 Score: 134.806 bits (338), Expect = 1.356e-35
Identity = 74/192 (38.54%), Postives = 112/192 (58.33%), Query Frame = 0
Query:   25 RKFAVVGHRGAGKSSVTRRFVQEKFTIQSAADPDEESLYRKVLETEGEERGVAKRKSSHEKTTQLVCCDIVDTPGPTRQYTEYAKEEFSRFLSRNALIGIHGYLLVYDITSRESFTIIQTLNEVVLRYHGDSPVPRVLLGGKLDLCAQRQVGKGEGRALARTLGIPFLEISAKHNVDVERAFRLLLEEVERG 216
            RK AV+G R  GKSS+  R+V++ F    +  P  E++++K +   G+E                  CDI+DT G         ++E+S   S++A IGIHGY+LVY I SR SF ++QT+++ +L Y G   VP +++G K DL  QRQV + EG+ LA  L   ++E+SA+HN +V +AF  +L E +RG
Sbjct:   14 RKIAVLGSRSVGKSSLIVRYVEDAFV--DSYYPTIENIFQKTITHRGQEYD----------------CDIIDTAG---------QDEYSILNSKHA-IGIHGYMLVYSIASRNSFDMVQTVHDKILNYTGTESVPCIIVGQKSDLHVQRQVSEAEGKQLAAQLKAAWIEVSARHNANVAKAFEAMLGETDRG 177          
BLAST of EWM24387.1 vs. NCBI_GenBank
Match: gi|1098869227|emb|SAM85439.1| (probable ras-related GTP-binding protein [Ustilago bromivora])

HSP 1 Score: 134.42 bits (337), Expect = 1.859e-35
Identity = 73/192 (38.02%), Postives = 114/192 (59.38%), Query Frame = 0
Query:   25 RKFAVVGHRGAGKSSVTRRFVQEKFTIQSAADPDEESLYRKVLETEGEERGVAKRKSSHEKTTQLVCCDIVDTPGPTRQYTEYAKEEFSRFLSRNALIGIHGYLLVYDITSRESFTIIQTLNEVVLRYHGDSPVPRVLLGGKLDLCAQRQVGKGEGRALARTLGIPFLEISAKHNVDVERAFRLLLEEVERG 216
            RK AV+G R  GKSS+  R+V++ F    +  P  E++++K +  +G+E                  CDI+DT G         ++E+S   S++A IGIHGY+LVY I SR SF ++QT+++ +L Y G   VP +++G K DL  QRQV + EG+ LA+ L   ++E+SA+HN +V +AF  +L E ++G
Sbjct:   13 RKIAVLGSRSVGKSSLIVRYVEDAFV--DSYYPTIENIFQKTITHKGQEYD----------------CDIIDTAG---------QDEYSILNSKHA-IGIHGYMLVYSIASRNSFDMVQTVHDKILNYTGTESVPCLIVGQKSDLHVQRQVSEAEGKQLAQQLKAAWIEVSARHNANVAKAFEAMLGETDKG 176          
BLAST of EWM24387.1 vs. NCBI_GenBank
Match: gi|388856959|emb|CCF49379.1| (probable ras-related GTP-binding protein [Ustilago hordei])

HSP 1 Score: 134.42 bits (337), Expect = 2.004e-35
Identity = 73/192 (38.02%), Postives = 114/192 (59.38%), Query Frame = 0
Query:   25 RKFAVVGHRGAGKSSVTRRFVQEKFTIQSAADPDEESLYRKVLETEGEERGVAKRKSSHEKTTQLVCCDIVDTPGPTRQYTEYAKEEFSRFLSRNALIGIHGYLLVYDITSRESFTIIQTLNEVVLRYHGDSPVPRVLLGGKLDLCAQRQVGKGEGRALARTLGIPFLEISAKHNVDVERAFRLLLEEVERG 216
            RK AV+G R  GKSS+  R+V++ F    +  P  E++++K +  +G+E                  CDI+DT G         ++E+S   S++A IGIHGY+LVY I SR SF ++QT+++ +L Y G   VP +++G K DL  QRQV + EG+ LA+ L   ++E+SA+HN +V +AF  +L E ++G
Sbjct:   13 RKIAVLGSRSVGKSSLIVRYVEDAFV--DSYYPTIENIFQKTITHKGQEYD----------------CDIIDTAG---------QDEYSILNSKHA-IGIHGYMLVYSIASRNSFDMVQTVHDKILNYTGTESVPCLIVGQKSDLHVQRQVSEAEGKQLAQQLKAAWIEVSARHNANVAKAFEAMLGETDKG 176          
The following BLAST results are available for this feature:
BLAST of EWM24387.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105787|gb|EWM24387.1|0.000e+0100.00putative ras family gtp binding protein [Nannochlo... [more]
gi|553192305|ref|XP_005855548.1|0.000e+099.23Ras-like protein [Nannochloropsis gaditana CCMP526... [more]
gi|1129841221|emb|SHO79307.1|1.546e-3841.62Similar to S.cerevisiae protein RHB1 (Putative Rhe... [more]
gi|164655341|ref|XP_001728801.1|2.517e-3740.72hypothetical protein MGL_4136 [Malassezia globosa ... [more]
gi|1063861338|ref|XP_017991147.1|4.958e-3739.39rheb gtpase rhb1 [Malassezia pachydermatis] >gi|92... [more]
gi|630968084|ref|XP_007880450.1|2.022e-3639.58hypothetical protein PFL1_04731 [Anthracocystis fl... [more]
gi|673529330|emb|CDI55593.1|2.743e-3639.06probable ras-related GTP-binding protein [Melanops... [more]
gi|343426019|emb|CBQ69551.1|1.356e-3538.54probable ras-related GTP-binding protein [Sporisor... [more]
gi|1098869227|emb|SAM85439.1|1.859e-3538.02probable ras-related GTP-binding protein [Ustilago... [more]
gi|388856959|emb|CCF49379.1|2.004e-3538.02probable ras-related GTP-binding protein [Ustilago... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6304rna6304Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications