rna6304, rna6304 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6304
Unique Name	rna6304
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1867
Alignment location	CM002468.1:207983..210803 -

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Properties


Property Name	Value
Product	putative ras family gtp binding protein
Orig transcript id	gnl\|cribi\|Naga_100508g2.5689.mrna
Orig protein id	gnl\|cribi\|Naga_100508g2.5689
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:207983..210803 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100508g2	gene6095	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24387.1	cds6289	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6304	rna6304-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:207983..210803-
coding sequence from alignment at CM002468.1:207983..210803-

mRNA sequence

>rna6304 ID=rna6304|Name=rna6304|organism=Nannochloropsis gaditana|type=mRNA|length=1867bp
CATGGATGTTGGATTAACGCGTGAGTCTCCTGTTTCGCGTGGCTTATGCT
TTGTTCACGCACAGGAACAGGGAGCAGGAGGGGCGCAGGGACCTGGATTA
GGACTGCCACAATGCGTCGACTGCGCACTGTGATACCGAGGAAAGCACAT
GCAAAGGGGCACCCATCGAGGACATTGGGGCATGGAGTACAGCTTGAAAA
CAGTGCTCGTTCTTCGGCGGCTTCTGTTTTTGGTGTTCCTTTTACCCCGG
TGCTTTCCATATCATCCATTCCCCTTGGAGGGGCTTTCAGCCGGCCCAGA
AGCAACAGCAACAGCAGCAGCAGTAGCAGCAGCAGCAGTGATAGTAGCAG
TAGCGACGATAGCAGCCACAGCAGCAGCAGCAACAGCAGCAGGAATCTAG
CACGTCGTCATCATAGTACCAAGACAAGCGCTCACGCGCAGGCAGTAGAA
GAGGAGGGGGGGGATGGCAGGGAGGGGGGAAAGAACATCGAGAAGGGCCG
CCCTGGCACACGCAGCGGTGTGCGACCAAAAGGTAAATGCATGCATACTC
TTGAGGATTGGCGCGTATTCGAGACACGAAGGTTGAGATAGCCGGTGGTG
AGGGAAGAAGAGTGTAAAGAAGGCAGGTGGCACTCGGTTTATTCAGGGGG
GATGCAAGGAGAAAGTAGCTTCGCTCTCTGTTACATTTGGGTCGGCATAT
TTAGCAGGTGGTGCGATGAAGCAAGGGCAGACTATCAAAAAGTAGAGAAG
TGCATGGGAAGGAAGAGATGCCTGTCGGCCAAGCCCGTCCACTCCACCCT
CTCACCTCGCCCGCTTCCTCCCTCCCCTTCTCTTCCCCACCAGGAACCCC
GTTCCGGCCCTCCCGCGGAGACAATGGCCGTGGCTGGTACGAGCTCTACA
AGGAGGCCGGCCCCGAGGGATTCAAGCGGTATCGTCCCCCGACCCCCTTC
GATTGGTCCCCTCCTTCCACCGCGACCCCCCCCTCCGAAGCTCCCCGACG
GAGTAAGGTCTTCCTCGGGATCTCGCTGGACAAGGAACCGCTGGGACGGA
TCGTCTTGGAGCTCGCTGATGACATCCTGCCCCTGGCGGCGGAGAATTTC
CGTCTCCTGTGCCAGGGGGCGGGGAGGGAGGGAGGGAGGGAGGGAGGGAA
GACGGGGCTTGGTTACGCCGGTTCCAGGATCCATCGGGTCGTGAAAGGGG
CCGGGATCGTGGGAGGTGACCTGAGTACCGCCCGTGCCCCTCCCTCCTCG
GGGGCGATCCGACCGCGACAACGGCAGGGAGGGGCGGGGAACCACTCAGG
CCTGGGCCCCCGCTTCTTCCCCGACGAATCTTTTCAGATTCCCCACACCG
GTCCCGGTCTCCTCAGCATGGTCTCCGCGGGCGCGCACCGGAACGGGTCC
GTCTTCCACATCTCCACCCACGCCTGCCCCCATCTGGACGGGCGGAGCGT
GGTGTTTGGGCGGGTGGTGGGGGGCGTGGAGGTGTTGGAGGCGGTAGCCA
ACACGTACACGATCAGGGGGCGGCCGGTGGCAGTGGTGAGGGTGGAGGAG
GCAGGCGTGATGGAGGCGGAGTGAGGGGCAGGGAGGGGTGGGCGGGGAGA
TTGTAAAGAGGGGGATGGGAGGGAAGGTAAGGATTTCCAAAGGCAAAGGG
GGGGGGAGAGAACAAGGAGGGGAGAGGGTATAAGTAGAATGCTGATGATG
ATGGCAGTGCGCGAGACAGAGGTAATTCGTGGCCATGGCAGGGAAGGAAC
GATGAGATGAGAAGGACGGTGGAGACTCAGGTTGCCGCCCGTCGGTCTGT
TGCTTCTTTTACTCCATCATAACTATGAGGAGCGTCCTCGTTACAGCTTT
GTTGAGTCATCCATGCA

protein sequence of rna6304

>rna6304-protein ID=rna6304-protein|Name=rna6304|organism=Nannochloropsis gaditana|type=polypeptide|length=259bp
MPPSSTSPRPPPSLRPPPLLGVVHRKFAVVGHRGAGKSSVTRRFVQEKFT
IQSAADPDEESLYRKVLETEGEERGVAKRKSSHEKTTQLVCCDIVDTPGP
TRQYTEYAKEEFSRFLSRNALIGIHGYLLVYDITSRESFTIIQTLNEVVL
RYHGDSPVPRVLLGGKLDLCAQRQVGKGEGRALARTLGIPFLEISAKHNV
DVERAFRLLLEEVERGEAGEGKGKWSLLGGEEEEQAFLGCRHERERSWEY
DGYGYCVVS

mRNA from alignment at CM002468.1:207983..210803-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6304 ID=rna6304|Name=rna6304|organism=Nannochloropsis gaditana|type=mRNA|length=2821bp|location=Sequence derived from alignment at CM002468.1:207983..210803- (Nannochloropsis gaditana)
AGAGGGCAGGGTGCGTGCAAGGAGACAACGCGGCTAGCTTGGGTCTTGAT
CACGTCGCACAACTATAGCAAGCCGGCCTGGTGAGTGTTTCTCGGTCGCC
TTCCTCCTCTTGCGGCGCCTGGGACCCGCCTTCTCTCGCCCTGTCACCTA
AGGTTTCACCTACCTCGTGCTGAGGCCTTTTCCATAATATGCCCCAAATT
CTCATTGTCTTGTTGTTATGTTTTCCTCTCTCACATCCTGCAGGGGTGAA
TTGCAATCCAAAGGCGAAGTTTTCAAGATTCAAAGCTTTGAAATGGGGGT
CCTTTTCCTCCCCTCCCGGTACCCGCGCCTAGCTCGAACCTTTTCATTGA
CCCCCTCCCACCCCCTCCTCGGTTTAGGACCGCCAGCTCAAGAAAACATC
TGTGGATTCTACTCGGCAGGATGGCAGGAGGCTAGGAAGGTTGCTAGGCG
AGAGGGGGGAGGCGGGGGGAAGGGGGGGGCGCTCCTGGCATTTCCCCTAC
CCTACGAATGTCCACCCACACGGTATGATTCTAGGGACGAGCCGTGGGTA
AGCCCTGTGCACCATTACTAAAGAGGCAGGAGAAACAGGTCAGCGACCGA
TAGGAGATAGAAAAGGTCGAGGAAGTTTCCAGCCGTGTAAATGTGTCTGG
AAAGAAGTCTTGAGGACAGGGTGCTTGAGGCCTCGTCAAAAGAAAGGGCA
GACTTTCATAGTTACAAGGGACAGCATAGTATCAAACAAGGGTGAAATAT
ACATAAAGAGCATGATGTAATTTTATGAAAGACTGGGAAGAAATGAACAT
GTGAGCCAGGAGCAACACGTATGCGGTGGGAGGGGGCTTGTGCTTCTTTT
CAGACTAGAAGGATAGATATAGCCATTTGCCGAATCCATTTAGGGTGAGG
ACAGTCACGAAAGGGCCGATGCCATCGTGCCTACGAACATGATCGAACCA
AAAAGGACCTTGGACAAGGCCAATGGATAAAAGGACGGTATGCTATGCAC
GGGGCAGTTTGCCTCCGACTCTTCCTGCAAATAACCTCCTGACTGTCTCG
AAAGAAAATTTCGTAAGTTCCATGTTCTGGGAAAGCTAGCTAGGACGACA
AAGTCCACGGTCCCACGACAACAAATTGATAGAGAATTTCTGCCTCCAAT
TTGATGGCTGTGTCATTTACAATTTGTGGCACGCTGAGTGCGATTTCGTA
GCTACGCGACGGAGGTGTTGAAAGATCAGGCGTAATGCACGTTTGTGTTG
CGTCCCGACATGGTGACTACCTTTTCTCAAAATTTTGTTGCTTAAAAGGG
ACCAAAGGATACATTAAACAGCGTTCATGTGGATGAAATGATCAAATTCA
TCCATTCTGATATGTGCCCCACGATCTTGTACTATTTTTGACCACCCGAT
TCCACTCGCACCCACCAACATTCATGTCCCTGCCTAGGTTTGCCGTTTGA
AATGCCGCCCTCCTCCACTTCGCCTCGTCCTCCCCCTTCCCTACGACCTC
CGCCTCTTCTGGGAGTAGTGCACCGCAAGTTTGCTGTCGTAGGTCATCGG
GGGGCGGGGAAGTCAAGTGTGACCAGGCGTTTCGTTCAAGAGAAGTTTAC
GATCCAATCGGCGGCAGACCCGGATGAAGAATCTCTGTACAGAAAGGTGT
TGGAAACTGAAGGAGAGGAGCGAGGGGTGGCAAAAAGGAAAAGTAGCCAC
GAAAAAACGACGCAGCTCGTGTGCTGCGATATAGTGGACACGCCAGGGCC
TACCAGGCAGTACACAGAGTACGCCAAGGAAGAATTCAGCCGGTTCCTCT
CCCGCAATGCGCTTATCGGCATTCATGGCTACCTGCTTGTCTACGACATC
ACCTCCCGCGAATCTTTTACCATTATCCAAACCCTGAACGAGGTCGTTTT
GCGGTACCACGGCGACTCGCCCGTGCCACGTGTCTTGTTGGGGGGCAAGT
TGGATCTATGCGCTCAGCGGCAGGTGGGAAAGGGTGAAGGCAGAGCATTG
GCACGCACATTAGGCATTCCCTTCCTGGAGATATCGGCCAAACACAACGT
GGACGTTGAGAGGGCCTTCCGATTGCTGTTGGAGGAAGTGGAGCGAGGGG
AGGCGGGGGAGGGGAAAGGCAAGTGGAGCCTCCTGGGCGGAGAGGAGGAG
GAACAAGCCTTCTTAGGATGTCGGCATGAGAGAGAAAGATCGTGGGAGTA
TGACGGGTACGGATATTGTGTGGTGAGCTAGGACATGTGAGAATTTATGC
AGGGATGAATGCGCCGAAGACTCCCGACTGCCCCCTGGCGGGCGCCAGAG
GGATCGATGCACACGTTTTCGACCACTGCGCAGCCTCAAGTTCCACACGA
TGTCCAGTGAAAAGAAAGTGACGAGACTGCAGGAGCTCGGGAACATGAGG
GTTTGTGAATTTAGGTGTCCCACGATGGATGCAAAGGTGTGGAGGAAGAG
GAAAGGGTCGAAGGGGGGAGTTGGAAACCCGAGAGGCTGCAATTTTGAAA
TTTTGAAAAATGCGAAATACGTGTACCAGTTGTGTAGACGTAAAAATGTG
CAGGATCCGAAAAGTGTACCGTCATTGTGTAATATCATCATGTTGAGACA
TTCTTTTGGGGTGGCGGCGGAGGATGAGCAGCAGATGCGGTCAGAGTACC
ATGGGTGAAGTCACCTTAAGTACGCGGGTTGCTTATAAGCGTTGGATCGG
TGGGTCAGAGGACGGAGGGTGAGTCGTTCTTGATGCATGGATGACTCAAC
AAAGCTGTAACGAGGACGCTCCTCATAGTTATGATGGAGTAAAAGAAGCA
ACAGACCGACGGGCGGCAACC

Coding sequence (CDS) from alignment at CM002468.1:207983..210803-

>rna6304 ID=rna6304|Name=rna6304|organism=Nannochloropsis gaditana|type=CDS|length=780bp|location=Sequence derived from alignment at CM002468.1:207983..210803- (Nannochloropsis gaditana)
ATGCCGCCCTCCTCCACTTCGCCTCGTCCTCCCCCTTCCCTACGACCTCC
GCCTCTTCTGGGAGTAGTGCACCGCAAGTTTGCTGTCGTAGGTCATCGGG
GGGCGGGGAAGTCAAGTGTGACCAGGCGTTTCGTTCAAGAGAAGTTTACG
ATCCAATCGGCGGCAGACCCGGATGAAGAATCTCTGTACAGAAAGGTGTT
GGAAACTGAAGGAGAGGAGCGAGGGGTGGCAAAAAGGAAAAGTAGCCACG
AAAAAACGACGCAGCTCGTGTGCTGCGATATAGTGGACACGCCAGGGCCT
ACCAGGCAGTACACAGAGTACGCCAAGGAAGAATTCAGCCGGTTCCTCTC
CCGCAATGCGCTTATCGGCATTCATGGCTACCTGCTTGTCTACGACATCA
CCTCCCGCGAATCTTTTACCATTATCCAAACCCTGAACGAGGTCGTTTTG
CGGTACCACGGCGACTCGCCCGTGCCACGTGTCTTGTTGGGGGGCAAGTT
GGATCTATGCGCTCAGCGGCAGGTGGGAAAGGGTGAAGGCAGAGCATTGG
CACGCACATTAGGCATTCCCTTCCTGGAGATATCGGCCAAACACAACGTG
GACGTTGAGAGGGCCTTCCGATTGCTGTTGGAGGAAGTGGAGCGAGGGGA
GGCGGGGGAGGGGAAAGGCAAGTGGAGCCTCCTGGGCGGAGAGGAGGAGG
AACAAGCCTTCTTAGGATGTCGGCATGAGAGAGAAAGATCGTGGGAGTAT
GACGGGTACGGATATTGTGTGGTGAGCTAG

Synonyms

Publications