EWM24388.1, cds6285 (CDS) Nannochloropsis gaditana

Overview
NameEWM24388.1
Unique Namecds6285
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:202982..203068 +
Alignment locationCM002468.1:203179..203268 +
Alignment locationCM002468.1:203439..203579 +
Alignment locationCM002468.1:203650..204051 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24388.1
Productoxidoreductase htatip2
Orig transcript idgnl|cribi|Naga_100508g5.5690.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:202982..203068 +
CM002468.1supercontigCM002468.1:203179..203268 +
CM002468.1supercontigCM002468.1:203439..203579 +
CM002468.1supercontigCM002468.1:203650..204051 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0000166nucleotide binding
GO:0016620oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
GO:0051287NAD binding
Vocabulary: INTERPRO
TermDefinition
IPR016040NAD(P)-bd_dom
IPR000534Semialdehyde_DH_NAD-bd
Homology
BLAST of EWM24388.1 vs. NCBI_GenBank
Match: gi|553192294|ref|XP_005855545.1| (oxidoreductase htatip2 [Nannochloropsis gaditana CCMP526] >gi|422293511|gb|EKU20811.1| oxidoreductase htatip2 [Nannochloropsis gaditana CCMP526] >gi|585105788|gb|EWM24388.1| oxidoreductase htatip2 [Nannochloropsis gaditana])

HSP 1 Score: 483.411 bits (1243), Expect = 1.485e-172
Identity = 239/239 (100.00%), Postives = 239/239 (100.00%), Query Frame = 0
Query:    1 MSTVAAFKAGGHNAFVVGWTGEVGKEVVSSLAATDAYKKVYLIGRRNAELPAGPGYEKMEQRILDFDSLLTDPPSPATIAAFADADVGFCCLGTTRGKSGVDGFIKVDYEYVLGAARAAKAGGLQAFHVVTSVGSNAASRMLYPKTKGRAEEGLKELSLARLSIYRPGVLLCNRAEKRLLDQAGRFFLAPVAAVAPTAMTVPTKVVGRAMVVNSVLGGVEGGTETLENAAIHAMAKKDL 239
            MSTVAAFKAGGHNAFVVGWTGEVGKEVVSSLAATDAYKKVYLIGRRNAELPAGPGYEKMEQRILDFDSLLTDPPSPATIAAFADADVGFCCLGTTRGKSGVDGFIKVDYEYVLGAARAAKAGGLQAFHVVTSVGSNAASRMLYPKTKGRAEEGLKELSLARLSIYRPGVLLCNRAEKRLLDQAGRFFLAPVAAVAPTAMTVPTKVVGRAMVVNSVLGGVEGGTETLENAAIHAMAKKDL
Sbjct:    1 MSTVAAFKAGGHNAFVVGWTGEVGKEVVSSLAATDAYKKVYLIGRRNAELPAGPGYEKMEQRILDFDSLLTDPPSPATIAAFADADVGFCCLGTTRGKSGVDGFIKVDYEYVLGAARAAKAGGLQAFHVVTSVGSNAASRMLYPKTKGRAEEGLKELSLARLSIYRPGVLLCNRAEKRLLDQAGRFFLAPVAAVAPTAMTVPTKVVGRAMVVNSVLGGVEGGTETLENAAIHAMAKKDL 239          
BLAST of EWM24388.1 vs. NCBI_GenBank
Match: gi|676465966|ref|XP_009057414.1| (hypothetical protein LOTGIDRAFT_217236 [Lottia gigantea] >gi|556103088|gb|ESO91740.1| hypothetical protein LOTGIDRAFT_217236 [Lottia gigantea])

HSP 1 Score: 222.631 bits (566), Expect = 1.416e-69
Identity = 115/239 (48.12%), Postives = 151/239 (63.18%), Query Frame = 0
Query:    2 STVAAFKAGGHNAFVVGWTGEVGKEVVSSLAATDAYKKVYLIGRRNAELP----AGPGYEKMEQRILDFDSLLTDPPSPATIAAFADADVGFCCLGTTRGKSGVDGFIKVDYEYVLGAARAAKAGGLQAFHVVTSVGSNAASRMLYPKTKGRAEEGLKELSLARLSIYRPGVLLCNRAEKRLLDQAGRFFLAPVAAVAPTAMTVPTKVVGRAMVVNSVLGGVEGGTETLENAAIHAMAK 236
              VA FK   H AFVVG+TGE GKE+V  + A D ++KV LIGRR  E+P    +G  YE   Q+++DFD+L            F D D+GFCCLGTT+ KSG  GF+KVDY+Y+L   + AK+ G + F +V+S G++  S M Y KTKG+ EE LK     RLS+YRPGVL+CNR E R  +   R FL PVAA+ PTA+T P + + +AM +N+V+   E   E  EN AIH +AK
Sbjct:    7 DNVAEFKERKHKAFVVGYTGESGKELVKQIQAADIFEKVVLIGRR--EVPPENISGVDYE---QKVVDFDNL------EQHAEVFNDCDIGFCCLGTTKAKSGAAGFLKVDYDYILSVGQIAKSKGCKHFSLVSSQGADKESSMFYLKTKGQVEEALKNHQFQRLSVYRPGVLMCNRQESRPGEAIARLFLKPVAALFPTAITTPVETLAKAM-INNVMMKSEKTYEIYENKAIHELAK 233          
BLAST of EWM24388.1 vs. NCBI_GenBank
Match: gi|908409396|ref|XP_013065725.1| (PREDICTED: oxidoreductase HTATIP2-like isoform X2 [Biomphalaria glabrata] >gi|908409398|ref|XP_013065726.1| PREDICTED: oxidoreductase HTATIP2-like isoform X2 [Biomphalaria glabrata])

HSP 1 Score: 219.935 bits (559), Expect = 1.998e-68
Identity = 108/235 (45.96%), Postives = 152/235 (64.68%), Query Frame = 0
Query:    1 MSTVAAFKAGGHNAFVVGWTGEVGKEVVSSLAATDAYKKVYLIGRRNAELPAGPGYEKMEQRILDFDSLLTDPPSPATIAAFADADVGFCCLGTTRGKSGVDGFIKVDYEYVLGAARAAKAGGLQAFHVVTSVGSNAASRMLYPKTKGRAEEGLKELSLARLSIYRPGVLLCNRAEKRLLDQAGRFFLAPVAAVAPTAMTVPTKVVGRAMVVNSVLGGVEGGTETLENAAIHAMA 235
            +++   FK+ GH AFV+G+TGEVGK +V  L     +KKV LIGRR   L  GP +E   Q+++DF+++            F + D+GFCCLGTTR KSGV GFI+VD++YVL AA  AKA G + F +V+S G++  S  LYP+TKG+ EE LK +   RLSIYRPGVL+C+R E R ++ A R  L P++   PTA+T P +++ RAM +N+ +      TE  +N AIH ++
Sbjct:    6 LTSHEKFKSEGHTAFVLGYTGEVGKVLVEELNDLKLFKKVVLIGRRQIPLNLGPEFE---QKVIDFENIDEHKD------VFENLDIGFCCLGTTRAKSGVQGFIRVDHDYVLLAAEIAKAQGCKHFSLVSSQGADKNSSFLYPRTKGQVEEALKVMHFNRLSIYRPGVLMCDRQESRPMEAAVRVVLKPLSYFFPTAITTPVQIMARAM-INNAISSTNISTELYDNKAIHQLS 230          
BLAST of EWM24388.1 vs. NCBI_GenBank
Match: gi|908409394|ref|XP_013065724.1| (PREDICTED: oxidoreductase HTATIP2-like isoform X1 [Biomphalaria glabrata])

HSP 1 Score: 219.935 bits (559), Expect = 9.193e-68
Identity = 108/235 (45.96%), Postives = 152/235 (64.68%), Query Frame = 0
Query:    1 MSTVAAFKAGGHNAFVVGWTGEVGKEVVSSLAATDAYKKVYLIGRRNAELPAGPGYEKMEQRILDFDSLLTDPPSPATIAAFADADVGFCCLGTTRGKSGVDGFIKVDYEYVLGAARAAKAGGLQAFHVVTSVGSNAASRMLYPKTKGRAEEGLKELSLARLSIYRPGVLLCNRAEKRLLDQAGRFFLAPVAAVAPTAMTVPTKVVGRAMVVNSVLGGVEGGTETLENAAIHAMA 235
            +++   FK+ GH AFV+G+TGEVGK +V  L     +KKV LIGRR   L  GP +E   Q+++DF+++            F + D+GFCCLGTTR KSGV GFI+VD++YVL AA  AKA G + F +V+S G++  S  LYP+TKG+ EE LK +   RLSIYRPGVL+C+R E R ++ A R  L P++   PTA+T P +++ RAM +N+ +      TE  +N AIH ++
Sbjct:   52 LTSHEKFKSEGHTAFVLGYTGEVGKVLVEELNDLKLFKKVVLIGRRQIPLNLGPEFE---QKVIDFENIDEHKD------VFENLDIGFCCLGTTRAKSGVQGFIRVDHDYVLLAAEIAKAQGCKHFSLVSSQGADKNSSFLYPRTKGQVEEALKVMHFNRLSIYRPGVLMCDRQESRPMEAAVRVVLKPLSYFFPTAITTPVQIMARAM-INNAISSTNISTELYDNKAIHQLS 276          
BLAST of EWM24388.1 vs. NCBI_GenBank
Match: gi|291245044|ref|XP_002742403.1| (PREDICTED: oxidoreductase HTATIP2-like [Saccoglossus kowalevskii])

HSP 1 Score: 217.624 bits (553), Expect = 3.689e-67
Identity = 112/234 (47.86%), Postives = 149/234 (63.68%), Query Frame = 0
Query:    2 STVAAFKAGGHNAFVVGWTGEVGKEVVSSLAATDAYKKVYLIGRRNAELPAGPGYEKMEQRILDFDSLLTDPPSPATIAAFADADVGFCCLGTTRGKSGVDGFIKVDYEYVLGAARAAKAGGLQAFHVVTSVGSNAASRMLYPKTKGRAEEGLKELSLARLSIYRPGVLLCNRAEKRLLDQAGRFFLAPVAAVAPTAMTVPTKVVGRAMVVNSVLGGVEGGTETLENAAIHAMA 235
            S  A+F+    +AFVVG+TGEVGKE+V  LA ++ + KV L+GRR  E       + +EQ+++DFD L            F D DVGFCCLGTTRGKSGV+GF KVD++YVL  A  AK  G Q F+++TSVG+N  S  LYP+TKG  E  + +L  +RLSIYRP +LLC+R E R  +   +  L+PV  +APTA++VPT  V +AMV N V    +   E  EN AIH ++
Sbjct:   47 SNKASFQEKQQSAFVVGYTGEVGKELVKELATSNIFSKVTLLGRRVVEY-EDEKLKSLEQKVVDFDKL------DEYEDLFKDHDVGFCCLGTTRGKSGVEGFKKVDHDYVLKTAELAKKTGCQHFNLLTSVGANKNSSFLYPRTKGLVESEITDLDFSRLSIYRPSMLLCDRTESRPGEWVLKKLLSPVTYLAPTAISVPTSTVAKAMVNNCVAPPGDKKVEIFENKAIHQIS 273          
BLAST of EWM24388.1 vs. NCBI_GenBank
Match: gi|871236039|ref|XP_012938592.1| (PREDICTED: oxidoreductase HTATIP2-like isoform X2 [Aplysia californica])

HSP 1 Score: 215.698 bits (548), Expect = 1.616e-66
Identity = 109/235 (46.38%), Postives = 150/235 (63.83%), Query Frame = 0
Query:    1 MSTVAAFKAGGHNAFVVGWTGEVGKEVVSSLAATDAYKKVYLIGRRNAELPAGPGYEKMEQRILDFDSLLTDPPSPATIAAFADADVGFCCLGTTRGKSGVDGFIKVDYEYVLGAARAAKAGGLQAFHVVTSVGSNAASRMLYPKTKGRAEEGLKELSLARLSIYRPGVLLCNRAEKRLLDQAGRFFLAPVAAVAPTAMTVPTKVVGRAMVVNSVLGGVEGGTETLENAAIHAMA 235
            +S++  FK+  H AFV+G++GEVGK +V  L     +K+V LIGRR   L  GP +E   QR++DF++L           AF D D+GFCCLGTTRGKSGV GFI+VD++YVL +A  AKA   + F +V+S G+N  S  LYP+TKG+ EE LK +   RLSIYRPG+L+ +R E R ++   R  L PV+   PTA+T P KV+  AM+ N ++ G     E  +N AIH ++
Sbjct:   18 LSSLERFKSENHTAFVLGYSGEVGKALVEELNQLKVFKRVVLIGRRQVPLSVGPEFE---QRVVDFENLDDHKD------AFKDLDMGFCCLGTTRGKSGVPGFIRVDHDYVLLSAEIAKAHSCKHFSLVSSQGANKNSSFLYPRTKGQVEEALKVMHFDRLSIYRPGLLMVDRQESRPMEATLRTLLRPVSYFFPTAVTTPVKVMALAMINNGMVAG--DKVEVYDNKAIHQLS 241          
BLAST of EWM24388.1 vs. NCBI_GenBank
Match: gi|871236036|ref|XP_012938591.1| (PREDICTED: oxidoreductase HTATIP2-like isoform X1 [Aplysia californica])

HSP 1 Score: 215.312 bits (547), Expect = 6.447e-66
Identity = 109/235 (46.38%), Postives = 150/235 (63.83%), Query Frame = 0
Query:    1 MSTVAAFKAGGHNAFVVGWTGEVGKEVVSSLAATDAYKKVYLIGRRNAELPAGPGYEKMEQRILDFDSLLTDPPSPATIAAFADADVGFCCLGTTRGKSGVDGFIKVDYEYVLGAARAAKAGGLQAFHVVTSVGSNAASRMLYPKTKGRAEEGLKELSLARLSIYRPGVLLCNRAEKRLLDQAGRFFLAPVAAVAPTAMTVPTKVVGRAMVVNSVLGGVEGGTETLENAAIHAMA 235
            +S++  FK+  H AFV+G++GEVGK +V  L     +K+V LIGRR   L  GP +E   QR++DF++L           AF D D+GFCCLGTTRGKSGV GFI+VD++YVL +A  AKA   + F +V+S G+N  S  LYP+TKG+ EE LK +   RLSIYRPG+L+ +R E R ++   R  L PV+   PTA+T P KV+  AM+ N ++ G     E  +N AIH ++
Sbjct:   52 LSSLERFKSENHTAFVLGYSGEVGKALVEELNQLKVFKRVVLIGRRQVPLSVGPEFE---QRVVDFENLDDHKD------AFKDLDMGFCCLGTTRGKSGVPGFIRVDHDYVLLSAEIAKAHSCKHFSLVSSQGANKNSSFLYPRTKGQVEEALKVMHFDRLSIYRPGLLMVDRQESRPMEATLRTLLRPVSYFFPTAVTTPVKVMALAMINNGMVAG--DKVEVYDNKAIHQLS 275          
BLAST of EWM24388.1 vs. NCBI_GenBank
Match: gi|405972388|gb|EKC37161.1| (Oxidoreductase HTATIP2 [Crassostrea gigas])

HSP 1 Score: 209.92 bits (533), Expect = 2.437e-64
Identity = 112/236 (47.46%), Postives = 146/236 (61.86%), Query Frame = 0
Query:    2 STVAAFKAGGHNAFVVGWTGEVGKEVVSSLAATDAYKKVYLIGRRNAELPA--GPGYEKMEQRILDFDSLLTDPPSPATIAAFADADVGFCCLGTTRGKSGVDGFIKVDYEYVLGAARAAKAGGLQAFHVVTSVGSNAASRMLYPKTKGRAEEGLKELSLARLSIYRPGVLLCNRAEKRLLDQAGRFFLAPVAAVAPTAMTVPTKVVGRAMVVNSVLGGVEGGTETLENAAIHAMA 235
              +  FK  GH+AFV+G+TGE+GK +V  L    A+K+V L+GRR   +    G G+E   +R++DFD+L           AFA  DVGF  LGTTR KSG  GF+KVD++YVL  A  AKA G + F   +S GS+  S +LY +TKG+AEE LK +   RLSI+RPG+LLC+R E R  +   R  L PV    PTA++ PT+VV RAMV N++    E  TE  EN AIH MA
Sbjct:    7 QNLENFKKEGHSAFVIGYTGEIGKVLVKELDEVKAFKRVVLVGRRQTNITQKLGAGFE---ERVVDFDNL------DDYKEAFAGCDVGFNTLGTTRAKSGAQGFVKVDHDYVLKTAEIAKASGCKHFLHTSSQGSDKNSSLLYTRTKGQAEESLKVIHFDRLSIFRPGILLCDREESRPSESFFRTVLKPVFYFFPTAISTPTEVVARAMVNNAISPPSENRTELFENKAIHMMA 233          
BLAST of EWM24388.1 vs. NCBI_GenBank
Match: gi|1207985573|ref|XP_021342486.1| (oxidoreductase HTATIP2-like [Mizuhopecten yessoensis] >gi|1207985575|ref|XP_021342488.1| oxidoreductase HTATIP2-like [Mizuhopecten yessoensis] >gi|1205813330|gb|OWF35470.1| Oxidoreductase HTATIP2 [Mizuhopecten yessoensis])

HSP 1 Score: 208.379 bits (529), Expect = 5.886e-64
Identity = 110/238 (46.22%), Postives = 147/238 (61.76%), Query Frame = 0
Query:    1 MSTVAAFKAGGHNAFVVGWTGEVGKEVVSSLAATDAYKKVYLIGRRNAELPAGPGYEKMEQRILDFDSLLTDPPSPATIAAFADADVGFCCLGTTRGKSGVDGFIKVDYEYVLGAARAAKAGGLQAFHVVTSVGSNAASRMLYPKTKGRAEEGLKELSLARLSIYRPGVLLCNRAEKRLLDQAGRFFLAPVAAVAPTAMTVPTKVVGRAMVVNSVLGGVEGGTETLENAAIHAMAKKD 238
             + V  +K  G  AF++G+TGE GKE+V +L+    + KV LIGRR  E+   PG E  EQ+++D+D L           AF    VG+CCLGTTR K+G +GFIKVD +YVL +A  AK+ G Q F VVT+  S+  S  LY KTKG  EEGLK +   +LSI+RP +LLC+R+E RL +   R    P A + PT  +VPT  VGRAMVV++V+ G +    T  NA IH + K+D
Sbjct:    6 QNKVKQYKEMGKTAFIIGYTGECGKELVKALSKNKIFSKVVLIGRRKVEISPDPGPE-FEQKVVDYDKL------EEYTEAFQGNQVGYCCLGTTRHKAGKEGFIKVDRDYVLKSAEIAKSTGCQHFSVVTASTSDKNSMFLYVKTKGEVEEGLKGMGFDKLSIFRPAMLLCDRSESRLGETFARACFKPWAYLFPTVGSVPTSYVGRAMVVDTVMPG-DDKIRTYSNAEIHGLIKQD 235          
BLAST of EWM24388.1 vs. NCBI_GenBank
Match: gi|762169381|ref|XP_011423094.1| (PREDICTED: oxidoreductase HTATIP2 [Crassostrea gigas])

HSP 1 Score: 208.764 bits (530), Expect = 2.885e-63
Identity = 112/231 (48.48%), Postives = 145/231 (62.77%), Query Frame = 0
Query:    7 FKAGGHNAFVVGWTGEVGKEVVSSLAATDAYKKVYLIGRRNAELPA--GPGYEKMEQRILDFDSLLTDPPSPATIAAFADADVGFCCLGTTRGKSGVDGFIKVDYEYVLGAARAAKAGGLQAFHVVTSVGSNAASRMLYPKTKGRAEEGLKELSLARLSIYRPGVLLCNRAEKRLLDQAGRFFLAPVAAVAPTAMTVPTKVVGRAMVVNSVLGGVEGGTETLENAAIHAMA 235
            FK  GH+AFV+G+TGE+GK +V  L    A+K+V L+GRR   +    G G+E   +R++DFD+L           AFA  DVGF  LGTTR KSG  GF+KVD++YVL  A  AKA G + F   +S GS+  S +LY +TKG+AEE LK +   RLSI+RPG+LLC+R E R  +   R  L PV    PTA++ PT+VV RAMV N++    E  TE  EN AIH MA
Sbjct:   60 FKKEGHSAFVIGYTGEIGKVLVKELDEVKAFKRVVLVGRRQTNITQKLGAGFE---ERVVDFDNL------DDYKEAFAGCDVGFNTLGTTRAKSGAQGFVKVDHDYVLKTAEIAKASGCKHFLHTSSQGSDKNSSLLYTRTKGQAEESLKVIHFDRLSIFRPGILLCDREESRPSESFFRTVLKPVFYFFPTAISTPTEVVARAMVNNAISPPSENRTELFENKAIHMMA 281          
The following BLAST results are available for this feature:
BLAST of EWM24388.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553192294|ref|XP_005855545.1|1.485e-172100.00oxidoreductase htatip2 [Nannochloropsis gaditana C... [more]
gi|676465966|ref|XP_009057414.1|1.416e-6948.12hypothetical protein LOTGIDRAFT_217236 [Lottia gig... [more]
gi|908409396|ref|XP_013065725.1|1.998e-6845.96PREDICTED: oxidoreductase HTATIP2-like isoform X2 ... [more]
gi|908409394|ref|XP_013065724.1|9.193e-6845.96PREDICTED: oxidoreductase HTATIP2-like isoform X1 ... [more]
gi|291245044|ref|XP_002742403.1|3.689e-6747.86PREDICTED: oxidoreductase HTATIP2-like [Saccogloss... [more]
gi|871236039|ref|XP_012938592.1|1.616e-6646.38PREDICTED: oxidoreductase HTATIP2-like isoform X2 ... [more]
gi|871236036|ref|XP_012938591.1|6.447e-6646.38PREDICTED: oxidoreductase HTATIP2-like isoform X1 ... [more]
gi|405972388|gb|EKC37161.1|2.437e-6447.46Oxidoreductase HTATIP2 [Crassostrea gigas][more]
gi|1207985573|ref|XP_021342486.1|5.886e-6446.22oxidoreductase HTATIP2-like [Mizuhopecten yessoens... [more]
gi|762169381|ref|XP_011423094.1|2.885e-6348.48PREDICTED: oxidoreductase HTATIP2 [Crassostrea gig... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6300rna6300Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications