rna6300, rna6300 (mRNA) Nannochloropsis gaditana

Overview
Namerna6300
Unique Namerna6300
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length382
Alignment locationCM002468.1:202872..204398 +

Link to JBrowse

Properties
Property NameValue
Productoxidoreductase htatip2
Orig transcript idgnl|cribi|Naga_100508g5.5690.mrna
Orig protein idgnl|cribi|Naga_100508g5.5690
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:202872..204398 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100508g5gene6092Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6300rna6300-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24388.1cds6285Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6300 ID=rna6300|Name=rna6300|organism=Nannochloropsis gaditana|type=mRNA|length=382bp
CCCTTCCTCCCTCCCTCCCCATTTCTCCCAATCTCTAAGACTCCTCTTCC
CTCTCGTTCCTTGTCGTACATCCTGAACCCGGCTCAACCTTCGCCTCCCT
CCTCCCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCCTCCCCCCC
TCCCTCCCCCCAGTTCAACTTGGCTTTCCTGGGCCTTCAGTATGGCATGC
TCGCCCTAGCCCTCCTCCTCTTCCTCCTCTGCCTCTACGCCTCCCTTTTC
CGCCCCCAACGGGCCCGACCCCGAGTGCGGCTACTTGGGAGGGAGGGTCT
AGTGCTTTTCTCCTCCACTGCCCTGCTCGGAATGCTCGTCATGCTCGTCA
GCAAGGAGAGGGTGGCTGAGCTCGCCATCCAG
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protein sequence of rna6300

>rna6300-protein ID=rna6300-protein|Name=rna6300|organism=Nannochloropsis gaditana|type=polypeptide|length=239bp
MSTVAAFKAGGHNAFVVGWTGEVGKEVVSSLAATDAYKKVYLIGRRNAEL
PAGPGYEKMEQRILDFDSLLTDPPSPATIAAFADADVGFCCLGTTRGKSG
VDGFIKVDYEYVLGAARAAKAGGLQAFHVVTSVGSNAASRMLYPKTKGRA
EEGLKELSLARLSIYRPGVLLCNRAEKRLLDQAGRFFLAPVAAVAPTAMT
VPTKVVGRAMVVNSVLGGVEGGTETLENAAIHAMAKKDL
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mRNA from alignment at CM002468.1:202872..204398+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6300 ID=rna6300|Name=rna6300|organism=Nannochloropsis gaditana|type=mRNA|length=1527bp|location=Sequence derived from alignment at CM002468.1:202872..204398+ (Nannochloropsis gaditana)
TCTGAACAAGATCTTCCATGTTAAGTCAAGcaaccctttcctttttgcaA
AATTAAAGGGTACACCTGCATCTATCGCCCTGAAAAGCGACTCgaccttt
cttcctcctcatgtcCACGGTAGCAGCTTTTAAAGCAGGGGGGCACAATG
CTTTTGTCGTAGGTTGGACCGGAGaagtgggcaaggaggtTGTCTCGGTA
AGGCGGTGGTTGCTGTGATAGCTCCCCAGTACTATTTCTGTCTTGGCCAA
ACTTGATAGGCATCCCACatctcctttttttttcctcgacTGCGTATCGC
GAAATAGTCTCTGGCCGCCACGGATGCCTACAAGAAAGTTTATCTGATCG
GACGCCGCAATGCCGAGCTCCCCGCAGGGCCCGGGTACGAGAAAATGGTG
TGTACTCTGTACCCAACGGGGAGCCTTGCTTGCTACTATAAAATTCGATC
GCATGAGTTTGTGTCACTTGCCAGACATTGCTTGTTATTGCAGATACACG
CGgaccctcctgtcctctctcCATCGGTTTCCTTGATACTGACTCTTCTC
GCCCTTGCCTTATGAAGGAACAACGAATCCTGGATTTCGACTCCCTCTTG
ACCGACCCACCCTCTCCGGCCACCATCGCGGCTTTTGCCGACGCCGACGT
TGGTTTCTGTTGCCTGGGGACCaccagggggaaaagcggggTCGATGGTT
TCATCAAGGTGAgtcaggaaggagcaggcaaCGGCCTTTCGGAAGGGCCG
acccgtccctctttcctccccatgtcAGGTGGATTATGAGTACGTGCTGG
GCGCTGCCCGCGCCGCCAAAGCAGGCGGCCTCCAGGCCTTCCACGTCGTC
ACCTCCGTGGGCAGCAACGCCGCCAGCCGCATGCTCTACCCCAAGACCAA
AGGCCGTGCCGAGGAGGGTCTCAAAGAATTAAGCCTGGCGCGGCTCTCCA
TCTACCGCCCCGGCGTCCTTCTCTGCAATCGGGCCGAGAAACGGTTGTTG
GATCAGGCCGGTCGTTTCTTTCTGGCGCCGGTAGCGGCCGTGGCGCCCAC
CGCCATGACCGTCCCCACCAAGGTTGTGGGGCGAGCGATGGTAGTCAATT
CGGTcctgggaggggtggagggaggcacagAAACGTTGGAAAACGCCGCG
ATCCATGCCATGGCCAAGAAAGATCTGTagaaaaagcgcgcgaaggacgg
aggaaggcgggaatggagggagggaaaagggcgagaggtggggagggagg
gtaggggtAGGAGGACATCGACAAGAGGGCTCCCCGCGgtcaagggaagg
gggggcacgccaAAGCAAGACATGGAAATGCCGCAGCCACGGAACGAACG
AGCCAAAGGCAAACGTGACAAGGGAAACaccgagcagggaggggtcgaag
TGCGGGGtgggtcttcctccatctgaCTTTTGATTTCGCGCAATCCCTCT
TCGAGGGCGCCGTCTTCTCCTCATCCTACAGCCCCCCGTCCCGCCGTTGC
TTCCGCCCCAACAACCTGTCGCTTATT
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Coding sequence (CDS) from alignment at CM002468.1:202872..204398+

>rna6300 ID=rna6300|Name=rna6300|organism=Nannochloropsis gaditana|type=CDS|length=2880bp|location=Sequence derived from alignment at CM002468.1:202872..204398+ (Nannochloropsis gaditana)
atgtcCACGGTAGCAGCTTTTAAAGCAGGGGGGCACAATGCTTTTGTCGT
AGGTTGGACCGGAGaagtgggcaaggaggtTGTCTCGTCTCTGGCCGCCA
CGGATGCCTACAAGAAAGTTTATCTGATCGGACGCCGCAATGCCGAGCTC
CCCGCAGGGCCCGGGTACGAGAAAATGGAACAACGAATCCTGGATTTCGA
CTCCCTCTTGACCGACCCACCCTCTCCGGCCACCATCGCGGCTTTTGCCG
ACGCCGACGTTGGTTTCTGTTGCCTGGGGACCaccagggggaaaagcggg
gTCGATGGTTTCATCAAGGTGGATTATGAGTACGTGCTGGGCGCTGCCCG
CGCCGCCAAAGCAGGCGGCCTCCAGGCCTTCCACGTCGTCACCTCCGTGG
GCAGCAACGCCGCCAGCCGCATGCTCTACCCCAAGACCAAAGGCCGTGCC
GAGGAGGGTCTCAAAGAATTAAGCCTGGCGCGGCTCTCCATCTACCGCCC
CGGCGTCCTTCTCTGCAATCGGGCCGAGAAACGGTTGTTGGATCAGGCCG
GTCGTTTCTTTCTGGCGCCGGTAGCGGCCGTGGCGCCCACCGCCATGACC
GTCCCCACCAAGGTTGTGGGGCGAGCGATGGTAGTCAATTCGGTcctggg
aggggtggagggaggcacagAAACGTTGGAAAACGCCGCGATCCATGCCA
TGGCCAAGAAAGATCTGTagatgtcCACGGTAGCAGCTTTTAAAGCAGGG
GGGCACAATGCTTTTGTCGTAGGTTGGACCGGAGaagtgggcaaggaggt
TGTCTCGTCTCTGGCCGCCACGGATGCCTACAAGAAAGTTTATCTGATCG
GACGCCGCAATGCCGAGCTCCCCGCAGGGCCCGGGTACGAGAAAATGGAA
CAACGAATCCTGGATTTCGACTCCCTCTTGACCGACCCACCCTCTCCGGC
CACCATCGCGGCTTTTGCCGACGCCGACGTTGGTTTCTGTTGCCTGGGGA
CCaccagggggaaaagcggggTCGATGGTTTCATCAAGGTGGATTATGAG
TACGTGCTGGGCGCTGCCCGCGCCGCCAAAGCAGGCGGCCTCCAGGCCTT
CCACGTCGTCACCTCCGTGGGCAGCAACGCCGCCAGCCGCATGCTCTACC
CCAAGACCAAAGGCCGTGCCGAGGAGGGTCTCAAAGAATTAAGCCTGGCG
CGGCTCTCCATCTACCGCCCCGGCGTCCTTCTCTGCAATCGGGCCGAGAA
ACGGTTGTTGGATCAGGCCGGTCGTTTCTTTCTGGCGCCGGTAGCGGCCG
TGGCGCCCACCGCCATGACCGTCCCCACCAAGGTTGTGGGGCGAGCGATG
GTAGTCAATTCGGTcctgggaggggtggagggaggcacagAAACGTTGGA
AAACGCCGCGATCCATGCCATGGCCAAGAAAGATCTGTagatgtcCACGG
TAGCAGCTTTTAAAGCAGGGGGGCACAATGCTTTTGTCGTAGGTTGGACC
GGAGaagtgggcaaggaggtTGTCTCGTCTCTGGCCGCCACGGATGCCTA
CAAGAAAGTTTATCTGATCGGACGCCGCAATGCCGAGCTCCCCGCAGGGC
CCGGGTACGAGAAAATGGAACAACGAATCCTGGATTTCGACTCCCTCTTG
ACCGACCCACCCTCTCCGGCCACCATCGCGGCTTTTGCCGACGCCGACGT
TGGTTTCTGTTGCCTGGGGACCaccagggggaaaagcggggTCGATGGTT
TCATCAAGGTGGATTATGAGTACGTGCTGGGCGCTGCCCGCGCCGCCAAA
GCAGGCGGCCTCCAGGCCTTCCACGTCGTCACCTCCGTGGGCAGCAACGC
CGCCAGCCGCATGCTCTACCCCAAGACCAAAGGCCGTGCCGAGGAGGGTC
TCAAAGAATTAAGCCTGGCGCGGCTCTCCATCTACCGCCCCGGCGTCCTT
CTCTGCAATCGGGCCGAGAAACGGTTGTTGGATCAGGCCGGTCGTTTCTT
TCTGGCGCCGGTAGCGGCCGTGGCGCCCACCGCCATGACCGTCCCCACCA
AGGTTGTGGGGCGAGCGATGGTAGTCAATTCGGTcctgggaggggtggag
ggaggcacagAAACGTTGGAAAACGCCGCGATCCATGCCATGGCCAAGAA
AGATCTGTagatgtcCACGGTAGCAGCTTTTAAAGCAGGGGGGCACAATG
CTTTTGTCGTAGGTTGGACCGGAGaagtgggcaaggaggtTGTCTCGTCT
CTGGCCGCCACGGATGCCTACAAGAAAGTTTATCTGATCGGACGCCGCAA
TGCCGAGCTCCCCGCAGGGCCCGGGTACGAGAAAATGGAACAACGAATCC
TGGATTTCGACTCCCTCTTGACCGACCCACCCTCTCCGGCCACCATCGCG
GCTTTTGCCGACGCCGACGTTGGTTTCTGTTGCCTGGGGACCaccagggg
gaaaagcggggTCGATGGTTTCATCAAGGTGGATTATGAGTACGTGCTGG
GCGCTGCCCGCGCCGCCAAAGCAGGCGGCCTCCAGGCCTTCCACGTCGTC
ACCTCCGTGGGCAGCAACGCCGCCAGCCGCATGCTCTACCCCAAGACCAA
AGGCCGTGCCGAGGAGGGTCTCAAAGAATTAAGCCTGGCGCGGCTCTCCA
TCTACCGCCCCGGCGTCCTTCTCTGCAATCGGGCCGAGAAACGGTTGTTG
GATCAGGCCGGTCGTTTCTTTCTGGCGCCGGTAGCGGCCGTGGCGCCCAC
CGCCATGACCGTCCCCACCAAGGTTGTGGGGCGAGCGATGGTAGTCAATT
CGGTcctgggaggggtggagggaggcacagAAACGTTGGAAAACGCCGCG
ATCCATGCCATGGCCAAGAAAGATCTGTag
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Synonyms
Publications