EWM24390.1, cds6278 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM24390.1 vs. NCBI_GenBank
Match: gi|585105792|gb|EWM24390.1| (hypothetical protein Naga_100283g5 [Nannochloropsis gaditana]) HSP 1 Score: 1521.52 bits (3938), Expect = 0.000e+0 Identity = 766/766 (100.00%), Postives = 766/766 (100.00%), Query Frame = 0
Query: 1 MVSATRRHRRYGGYGGGSGGRGKGTGRGGAHAVGQQGVDETLLRKYHQAADLIAPVERDEEKRNVHRVREYWLEHEAIKHLATLQALQIPVATFESHFLQANAHNPKYVRGTLRETVRTFFREFTDEAGVRVLTLKLSERMVYSKPSKNILKRWNLSNGMLYFFYAAVGRSAPPTGDEILEPFYFQKRVDFIRKVCGGGEGAGSDVGLALSLPPALRPAGERGQGEAVGGGEGLTEAGVGTAATAAGGLGGRGERHRAGSHDFFYQQEQLQQAGRSRKRRREGGGAPLPLSELYVPADPVSASVEKAGVKEEAPVEVEDGDEEAVHLLLSFLKERVWAGVEEKAVRDAVSAGVWRLVAEESLEADPSLAYLARPARTFWVPSLAPPAWEEGKEGGVEGGVEGWGWENGCLPVFVRACRRNWAKVEGVWEAWNEDLGNNALEWKELWRDVGAEEGEEGGVEEDLGMDLGLELKAPVAGESGRKEEEDSFLLFPCSLEGAQAETENVSMPSMGVMRDGREDVTEGVTEGGLPEHRGAPVVFAPVPDPNGDFPPLGYGQTRPFPSLVPSTDPSSLSFSSTPTRSVTVAPPPGDVFFSVSVEGEDGKEDGREDRREDGREGAVFQEGALKPWVKQEEMREEREEEATEVVSAGTSAAATVEGGEGGTEEVWEDGEEGRMMMDLGLNMGDATLQAFMAGVGGGMEGGKEGGKGGVGGREGMTGEVNTSGRGMGEGGCGLVDESFYFAYPGPQSEVGSNGEVPPLPVSENLF 766
MVSATRRHRRYGGYGGGSGGRGKGTGRGGAHAVGQQGVDETLLRKYHQAADLIAPVERDEEKRNVHRVREYWLEHEAIKHLATLQALQIPVATFESHFLQANAHNPKYVRGTLRETVRTFFREFTDEAGVRVLTLKLSERMVYSKPSKNILKRWNLSNGMLYFFYAAVGRSAPPTGDEILEPFYFQKRVDFIRKVCGGGEGAGSDVGLALSLPPALRPAGERGQGEAVGGGEGLTEAGVGTAATAAGGLGGRGERHRAGSHDFFYQQEQLQQAGRSRKRRREGGGAPLPLSELYVPADPVSASVEKAGVKEEAPVEVEDGDEEAVHLLLSFLKERVWAGVEEKAVRDAVSAGVWRLVAEESLEADPSLAYLARPARTFWVPSLAPPAWEEGKEGGVEGGVEGWGWENGCLPVFVRACRRNWAKVEGVWEAWNEDLGNNALEWKELWRDVGAEEGEEGGVEEDLGMDLGLELKAPVAGESGRKEEEDSFLLFPCSLEGAQAETENVSMPSMGVMRDGREDVTEGVTEGGLPEHRGAPVVFAPVPDPNGDFPPLGYGQTRPFPSLVPSTDPSSLSFSSTPTRSVTVAPPPGDVFFSVSVEGEDGKEDGREDRREDGREGAVFQEGALKPWVKQEEMREEREEEATEVVSAGTSAAATVEGGEGGTEEVWEDGEEGRMMMDLGLNMGDATLQAFMAGVGGGMEGGKEGGKGGVGGREGMTGEVNTSGRGMGEGGCGLVDESFYFAYPGPQSEVGSNGEVPPLPVSENLF
Sbjct: 1 MVSATRRHRRYGGYGGGSGGRGKGTGRGGAHAVGQQGVDETLLRKYHQAADLIAPVERDEEKRNVHRVREYWLEHEAIKHLATLQALQIPVATFESHFLQANAHNPKYVRGTLRETVRTFFREFTDEAGVRVLTLKLSERMVYSKPSKNILKRWNLSNGMLYFFYAAVGRSAPPTGDEILEPFYFQKRVDFIRKVCGGGEGAGSDVGLALSLPPALRPAGERGQGEAVGGGEGLTEAGVGTAATAAGGLGGRGERHRAGSHDFFYQQEQLQQAGRSRKRRREGGGAPLPLSELYVPADPVSASVEKAGVKEEAPVEVEDGDEEAVHLLLSFLKERVWAGVEEKAVRDAVSAGVWRLVAEESLEADPSLAYLARPARTFWVPSLAPPAWEEGKEGGVEGGVEGWGWENGCLPVFVRACRRNWAKVEGVWEAWNEDLGNNALEWKELWRDVGAEEGEEGGVEEDLGMDLGLELKAPVAGESGRKEEEDSFLLFPCSLEGAQAETENVSMPSMGVMRDGREDVTEGVTEGGLPEHRGAPVVFAPVPDPNGDFPPLGYGQTRPFPSLVPSTDPSSLSFSSTPTRSVTVAPPPGDVFFSVSVEGEDGKEDGREDRREDGREGAVFQEGALKPWVKQEEMREEREEEATEVVSAGTSAAATVEGGEGGTEEVWEDGEEGRMMMDLGLNMGDATLQAFMAGVGGGMEGGKEGGKGGVGGREGMTGEVNTSGRGMGEGGCGLVDESFYFAYPGPQSEVGSNGEVPPLPVSENLF 766
BLAST of EWM24390.1 vs. NCBI_GenBank
Match: gi|553192315|ref|XP_005855550.1| (hypothetical protein NGA_0641700 [Nannochloropsis gaditana CCMP526] >gi|422293516|gb|EKU20816.1| hypothetical protein NGA_0641700 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 1150.58 bits (2975), Expect = 0.000e+0 Identity = 669/747 (89.56%), Postives = 672/747 (89.96%), Query Frame = 0
Query: 33 VGQQGVDETLLRKYHQAADLIAPVERDEEKRNVHRVREYWLEHEAIKHLATLQALQIPVATFESHFLQANAHNPKYVRGTLRETVRTFFREFTDEAGVRVLTLKLSERMVYSKPSKNILKRWNLSNGMLYFFYAAVGRSAPPTGDEILEPFYFQKRVDFIRKVCGGGEGAGSDVGLALSLPPALRPAGERGQGEAVGGGEGLTEAGVGTAATAAGGLGGRGERHRAGSHDFFYQQEQLQQAGRSRKRRREGGGAPLPLSELYVPADPVSASVEKAGVKEEAPVEVEDGDEEAVHLLLSFLKERVWAGVEEKAVRDAVSAGVWRLVAEESLEADPSLAYLARPARTFWVPSLAPPAWEEGKEGGVEGGVEGWGWENGCLPVFVRACRRNWAKVEGVWEAWNEDLGNNALEWKELWRDVGAEEGEEGGVEEDLGMDLGLELKAPVAGESGRKEEEDSFLLFPCSLEGAQAETENVSMPSMGVMRDGREDVTEGVTEGGLPEHRGAPVVFAPVPDPNGDFPPLGYGQTRPFPSLVPSTDPSSLSFSSTPTRSVTVAPPPGDVFFSVSVEGEDGKEDGREDRREDGREGAVFQEGALKPWVKQEEMREEREEEATEVVSAGTSAAATVEGGEGGTEEVWEDGEEGRMMMDLGLNMGDATLQAFMAGVGGGMEGGK-------------EGGKGGVGGREGMTGEVNTSGRGMGEGGCGLVDESFYFAYPGPQSEVGSNGEVPPLPVSENLF 766
+ QQGVDETLLRKYHQAADLIAPVERDEEKRNVHRVREYWLEHEAIKHLATLQALQIPVATFESHFLQANAHNPKYVRGTLRETVRTFFREFTDEAGVRVLTLKLSERMVYSKPSKNILKRWNLSNGMLYFFYAAVGRSAPPTGDEILEPFYFQKRVDFIRKVCGGGEGAGSDVGLALSLPPALRPAGERGQGEAVGGGEGLTEAGVGTAATAAGGLGGRG+RHRAGSHDFFYQQEQLQQAGRSRKRRREGGGAPLPLSELYVPADPVSASVEKAGVKEEAPVEVEDGDEEAVHLLLSFLKERVWAGVEEKAVRDAVSAGVWRLVAEESLEADPSLAYLARPARTFW VEGVWEAWNEDLGNNALEWKELWRDVGAEEGEE GVEEDL MDLGLELKAPVAGESGRKEEEDSFLLFPCSLEG Q ETENVSMPSMGVMRDGREDVTEGVTEGGLPEHRGAPVVFAPVPDPNGD+PPL YGQTRPFPSLVPSTDPSSLSFSSTPTRSVTVAPPPGDVFFSVSVEGEDGKEDGREDRREDGREGAVFQEGALKPWVKQEEMREEREEEATEVVSAGTSAAATVEGGEGGTEEVWEDGEEGRMMMDLGLNMGDATLQAFMAG EGGKGGVGGREGMTGEV SGRGMGEGGCGLVDESFYFAYPGPQS VGSNGEVPPLPVSENLF
Sbjct: 346 IAQQGVDETLLRKYHQAADLIAPVERDEEKRNVHRVREYWLEHEAIKHLATLQALQIPVATFESHFLQANAHNPKYVRGTLRETVRTFFREFTDEAGVRVLTLKLSERMVYSKPSKNILKRWNLSNGMLYFFYAAVGRSAPPTGDEILEPFYFQKRVDFIRKVCGGGEGAGSDVGLALSLPPALRPAGERGQGEAVGGGEGLTEAGVGTAATAAGGLGGRGDRHRAGSHDFFYQQEQLQQAGRSRKRRREGGGAPLPLSELYVPADPVSASVEKAGVKEEAPVEVEDGDEEAVHLLLSFLKERVWAGVEEKAVRDAVSAGVWRLVAEESLEADPSLAYLARPARTFW--------------------------------------------VEGVWEAWNEDLGNNALEWKELWRDVGAEEGEESGVEEDLDMDLGLELKAPVAGESGRKEEEDSFLLFPCSLEGPQTETENVSMPSMGVMRDGREDVTEGVTEGGLPEHRGAPVVFAPVPDPNGDYPPLVYGQTRPFPSLVPSTDPSSLSFSSTPTRSVTVAPPPGDVFFSVSVEGEDGKEDGREDRREDGREGAVFQEGALKPWVKQEEMREEREEEATEVVSAGTSAAATVEGGEGGTEEVWEDGEEGRMMMDLGLNMGDATLQAFMAGXXXXDSSSNFLVLHPQGMEGGKEGGKGGVGGREGMTGEVTMSGRGMGEGGCGLVDESFYFAYPGPQSVVGSNGEVPPLPVSENLF 1048 The following BLAST results are available for this feature:
BLAST of EWM24390.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 2
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|