rna6287, rna6287 (mRNA) Nannochloropsis gaditana

Overview
Namerna6287
Unique Namerna6287
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length293
Alignment locationCM002468.1:176603..177246 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102273g1.4654.mrna
Orig protein idgnl|cribi|Naga_102273g1.4654
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:176603..177246 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102273g1gene6080Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6287rna6287-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24401.1cds6272Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6287 ID=rna6287|Name=rna6287|organism=Nannochloropsis gaditana|type=mRNA|length=293bp
CCTCTAGGTGCTGGGAGGAGACAATGGATGACTGCACCCTGACCAAGGCG
GTTTTGTACCTGAATGCCCCCGAGGCGGTGATGCTGGAACGGCTTCTGGA
ACGCGGAAAGACCAGCGGGCGGTCGGACGACAACGCGGAGAGCATCAAAA
AACGATTCAAGACCTACGTGGAAAGCACCATGCCCATCATCGAACACTTC
AAAGCACAGGAAAAACTGTGGGAGGTGCGAGCGGATCGCCCCATCGGAGA
TGTCTCGGCGGACGTGCTCAAGTTTTTTGACGGGTGGCTGTGA
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protein sequence of rna6287

>rna6287-protein ID=rna6287-protein|Name=rna6287|organism=Nannochloropsis gaditana|type=polypeptide|length=128bp
MEVVMRREKGRVSGRNGRGGGDEEGGKKRVAKGWSGVEPRRDGRESRDRG
VGRANGGRERRREGGREGRREGRRKGRYKETLRAELCNKEVCRPYLALTL
SGHAPRDQNELKMEHLPPQFPALPPPPP
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mRNA from alignment at CM002468.1:176603..177246+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6287 ID=rna6287|Name=rna6287|organism=Nannochloropsis gaditana|type=mRNA|length=644bp|location=Sequence derived from alignment at CM002468.1:176603..177246+ (Nannochloropsis gaditana)
gggaagaagggatggaggggaggagggtgaaaagggagggggaaggagta
gaggaggaggaggagagaggagtgCATGACCACCCTCCctgcgggggaga
gggaaggaggaagggggtgggggcgacgaagaacaggaggaggaggagga
ggagggagaaagaggaggttcAGGAACAGGGGAAGGTTCACGCCacgaaa
aaatgcgcgagTGCTCAAGGATGGATGAAAAAAACTTGTAGTACGGGGAG
AATGGATGaatggaggtggtgatgaggagggagaaagggagggtaaGTGG
ACGGAATGGGAGAGGTGgcggtgatgaggaaggagggaaaaagagggtaG
CGAAGGGATGGAGTGGCGTCGAgccgaggagggacgggcgtgAGTCACGG
GATCGCGGGGTAGGAAGGgcgaacggagggagggagagaaggagggaagg
agggagggagggaaggagggagggaaggaggaaaggaaggtatAAGGAGA
CCCTCCGGGCGGAGTTGTGCAACAAAGAAGTCTGTCGCCCGTATCTTGCT
CTCACCTTAAGTGGACATGCTCCCCGCGACCAGAACGAGCTTAAAATGGa
gcaccttcctcctcagttccccgccctccctcctcccccccccc
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Coding sequence (CDS) from alignment at CM002468.1:176603..177246+

>rna6287 ID=rna6287|Name=rna6287|organism=Nannochloropsis gaditana|type=CDS|length=385bp|location=Sequence derived from alignment at CM002468.1:176603..177246+ (Nannochloropsis gaditana)
atggaggtggtgatgaggagggagaaagggagggtaaGTGGACGGAATGG
GAGAGGTGgcggtgatgaggaaggagggaaaaagagggtaGCGAAGGGAT
GGAGTGGCGTCGAgccgaggagggacgggcgtgAGTCACGGGATCGCGGG
GTAGGAAGGgcgaacggagggagggagagaaggagggaaggagggaggga
gggaaggagggagggaaggaggaaaggaaggtatAAGGAGACCCTCCGGG
CGGAGTTGTGCAACAAAGAAGTCTGTCGCCCGTATCTTGCTCTCACCTTA
AGTGGACATGCTCCCCGCGACCAGAACGAGCTTAAAATGGagcaccttcc
tcctcagttccccgccctccctcctcccccccccc
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Synonyms
Publications