EWM24407.1, cds6265 (CDS) Nannochloropsis gaditana

Overview
NameEWM24407.1
Unique Namecds6265
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:166018..166039 -
Alignment locationCM002468.1:165712..165839 -
Alignment locationCM002468.1:164795..165430 -
Alignment locationCM002468.1:164565..164660 -
Alignment locationCM002468.1:164417..164470 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24407.1
Productkef-type k transport systems -binding component
Orig transcript idgnl|cribi|Naga_100832g2.990.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:166018..166039 -
CM002468.1supercontigCM002468.1:165712..165839 -
CM002468.1supercontigCM002468.1:164795..165430 -
CM002468.1supercontigCM002468.1:164565..164660 -
CM002468.1supercontigCM002468.1:164417..164470 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005886plasma membrane
GO:0008076voltage-gated potassium channel complex
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0006813potassium ion transport
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
GO:0005249voltage-gated potassium channel activity
Vocabulary: INTERPRO
TermDefinition
IPR028325VG_K_chnl
IPR0130992pore_dom_K_chnl_dom
Homology
BLAST of EWM24407.1 vs. NCBI_GenBank
Match: gi|585105818|gb|EWM24407.1| (kef-type k+ transport systems -binding component [Nannochloropsis gaditana])

HSP 1 Score: 627.091 bits (1616), Expect = 0.000e+0
Identity = 311/311 (100.00%), Postives = 311/311 (100.00%), Query Frame = 0
Query:    1 MTATTVGFGDFYPTSTLGRFVAIVAAYTGIVGIALPSTIIGKSFIDVYFRVLEERKKEEQLLKAEREREEEARKARGDTGTGLMALLCCRRRRRAPAVVPGMEGGREGGKEGGKEGGKEGGRLVGGLKTEADSTPSQSPRRPWRDFYIERENTVAQRVLRKEKELAEEKAKEDALVREIEAQVWAQEQEERAQVGAEGEEEGRARCDGKEGGKCQGYTLAASVLEGRGSNVPSAHLMTCIHQANRGGASASAALQAIPLAKKVRKQQQQIEKLAHIVGDQLHHIHALSEALTEMERATVYLMSRFDELESD 311
            MTATTVGFGDFYPTSTLGRFVAIVAAYTGIVGIALPSTIIGKSFIDVYFRVLEERKKEEQLLKAEREREEEARKARGDTGTGLMALLCCRRRRRAPAVVPGMEGGREGGKEGGKEGGKEGGRLVGGLKTEADSTPSQSPRRPWRDFYIERENTVAQRVLRKEKELAEEKAKEDALVREIEAQVWAQEQEERAQVGAEGEEEGRARCDGKEGGKCQGYTLAASVLEGRGSNVPSAHLMTCIHQANRGGASASAALQAIPLAKKVRKQQQQIEKLAHIVGDQLHHIHALSEALTEMERATVYLMSRFDELESD
Sbjct:    1 MTATTVGFGDFYPTSTLGRFVAIVAAYTGIVGIALPSTIIGKSFIDVYFRVLEERKKEEQLLKAEREREEEARKARGDTGTGLMALLCCRRRRRAPAVVPGMEGGREGGKEGGKEGGKEGGRLVGGLKTEADSTPSQSPRRPWRDFYIERENTVAQRVLRKEKELAEEKAKEDALVREIEAQVWAQEQEERAQVGAEGEEEGRARCDGKEGGKCQGYTLAASVLEGRGSNVPSAHLMTCIHQANRGGASASAALQAIPLAKKVRKQQQQIEKLAHIVGDQLHHIHALSEALTEMERATVYLMSRFDELESD 311          
BLAST of EWM24407.1 vs. NCBI_GenBank
Match: gi|585105819|gb|EWM24408.1| (kef-type k+ transport systems -binding component [Nannochloropsis gaditana])

HSP 1 Score: 461.07 bits (1185), Expect = 1.168e-162
Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = 0
Query:   84 MALLCCRRRRRAPAVVPGMEGGREGGKEGGKEGGKEGGRLVGGLKTEADSTPSQSPRRPWRDFYIERENTVAQRVLRKEKELAEEKAKEDALVREIEAQVWAQEQEERAQVGAEGEEEGRARCDGKEGGKCQGYTLAASVLEGRGSNVPSAHLMTCIHQANRGGASASAALQAIPLAKKVRKQQQQIEKLAHIVGDQLHHIHALSEALTEMERATVYLMSRFDELESD 311
            MALLCCRRRRRAPAVVPGMEGGREGGKEGGKEGGKEGGRLVGGLKTEADSTPSQSPRRPWRDFYIERENTVAQRVLRKEKELAEEKAKEDALVREIEAQVWAQEQEERAQVGAEGEEEGRARCDGKEGGKCQGYTLAASVLEGRGSNVPSAHLMTCIHQANRGGASASAALQAIPLAKKVRKQQQQIEKLAHIVGDQLHHIHALSEALTEMERATVYLMSRFDELESD
Sbjct:    1 MALLCCRRRRRAPAVVPGMEGGREGGKEGGKEGGKEGGRLVGGLKTEADSTPSQSPRRPWRDFYIERENTVAQRVLRKEKELAEEKAKEDALVREIEAQVWAQEQEERAQVGAEGEEEGRARCDGKEGGKCQGYTLAASVLEGRGSNVPSAHLMTCIHQANRGGASASAALQAIPLAKKVRKQQQQIEKLAHIVGDQLHHIHALSEALTEMERATVYLMSRFDELESD 228          
BLAST of EWM24407.1 vs. NCBI_GenBank
Match: gi|597758161|ref|XP_007240797.1| (PREDICTED: potassium voltage-gated channel subfamily F member 1 [Astyanax mexicanus])

HSP 1 Score: 66.2402 bits (160), Expect = 1.539e-8
Identity = 38/83 (45.78%), Postives = 48/83 (57.83%), Query Frame = 0
Query:    1 MTATTVGFGDFYPTSTLGRFVAIVAAYTGIVGIALPSTIIGKSFIDVYF--RVLEERKKEEQLLKAEREREEEARKARGDTGT 81
            +T TTVG+GD YP +TLGR  A V+   G+V IALP   I  +F+  Y   R LE   K E  L A R +EEE R+ +G   T
Sbjct:  373 ITMTTVGYGDVYPKTTLGRCNAAVSFLCGVVAIALPIHPIINNFVTFYNKQRALESAAKHEIELMALRSQEEEKREGKGQRAT 455          
BLAST of EWM24407.1 vs. NCBI_GenBank
Match: gi|255085925|ref|XP_002508929.1| (voltage-gated ion channel superfamily [Micromonas commoda] >gi|226524207|gb|ACO70187.1| voltage-gated ion channel superfamily [Micromonas commoda])

HSP 1 Score: 65.0846 bits (157), Expect = 4.362e-8
Identity = 30/73 (41.10%), Postives = 47/73 (64.38%), Query Frame = 0
Query:    1 MTATTVGFGDFYPTSTLGRFVAIVAAYTGIVGIALPSTIIGKSFIDVYFRVLEERKKEEQLLKAEREREEEAR 73
            +T TTVG+GD YP + +GR VA++   +GIV +A+P T+IG +F++      E RK +   LK +R +E  A+
Sbjct:  296 VTMTTVGYGDMYPITLIGRIVAVITMLSGIVVLAMPITLIGSNFVE------EYRKSQANELKEKRRKESNAK 362          
BLAST of EWM24407.1 vs. NCBI_GenBank
Match: gi|303287769|ref|XP_003063173.1| (voltage-gated ion channel superfamily [Micromonas pusilla CCMP1545] >gi|226455005|gb|EEH52309.1| voltage-gated ion channel superfamily [Micromonas pusilla CCMP1545])

HSP 1 Score: 64.6994 bits (156), Expect = 5.870e-8
Identity = 30/71 (42.25%), Postives = 47/71 (66.20%), Query Frame = 0
Query:    1 MTATTVGFGDFYPTSTLGRFVAIVAAYTGIVGIALPSTIIGKSFIDVYFRV----LEERKKEEQLLKAERE 67
            +T TTVG+GD +P +  GRF+A++  + GI+ IA+P T+IG +F+D Y +       E+K+ E L KA+ E
Sbjct:  304 VTMTTVGYGDMFPITLYGRFIAVLTLFAGIIVIAMPITLIGSNFVDEYRKSQMAQWREKKRLEALAKAKEE 374          
BLAST of EWM24407.1 vs. NCBI_GenBank
Match: gi|966648727|gb|KTF83637.1| (hypothetical protein cypCar_00030994 [Cyprinus carpio])

HSP 1 Score: 62.003 bits (149), Expect = 1.173e-7
Identity = 35/72 (48.61%), Postives = 44/72 (61.11%), Query Frame = 0
Query:    1 MTATTVGFGDFYPTSTLGRFVAIVAAYTGIVGIALPSTIIGKSFIDVYF--RVLEERKKEEQLLKAEREREE 70
            +T TTVG+GD YP +TLGR  A V+   G++ IALP   I  +F+ VY   RVLE   K E  L A R +EE
Sbjct:  103 ITMTTVGYGDIYPKTTLGRCNAAVSFLCGVIAIALPIHPIINNFVIVYSKQRVLETAAKHEIELMALRAKEE 174          
BLAST of EWM24407.1 vs. NCBI_GenBank
Match: gi|130492250|ref|NP_001076280.1| (potassium voltage-gated channel, subfamily F, member 1a [Danio rerio] >gi|1207154344|ref|XP_021324115.1| potassium voltage-gated channel, subfamily F, member 1a isoform X1 [Danio rerio] >gi|190337496|gb|AAI63435.1| Potassium voltage-gated channel, subfamily F, member 1 [Danio rerio] >gi|190339860|gb|AAI63424.1| Potassium voltage-gated channel, subfamily F, member 1 [Danio rerio])

HSP 1 Score: 62.3882 bits (150), Expect = 2.663e-7
Identity = 36/72 (50.00%), Postives = 44/72 (61.11%), Query Frame = 0
Query:    1 MTATTVGFGDFYPTSTLGRFVAIVAAYTGIVGIALPSTIIGKSFIDVYF--RVLEERKKEEQLLKAEREREE 70
            +T TTVG+GD YP +TLGR  A V+   G++ IALP   I  +F+ VY   RVLE   K E  L A R REE
Sbjct:  369 ITMTTVGYGDIYPKTTLGRCNAAVSFLCGVIAIALPIHPIINNFVIVYSKQRVLETAAKHEIELMALRAREE 440          
BLAST of EWM24407.1 vs. NCBI_GenBank
Match: gi|88976032|gb|ABD59027.1| (voltage-gated potassium channel [Physalia physalis])

HSP 1 Score: 62.003 bits (149), Expect = 3.534e-7
Identity = 33/94 (35.11%), Postives = 54/94 (57.45%), Query Frame = 0
Query:    1 MTATTVGFGDFYPTSTLGRFVAIVAAYTGIVGIALPSTIIGKSFIDVYFRVLEERKKEEQLLKAEREREEEARKARGDTGTGLMALLCCRRRRR 94
            +T TTVG+GD YPT+ LG+ +  VA   G++ IALP  ++  +F   Y +    RK EE  ++ E E++ E RK+     + +   + CR+ R+
Sbjct:  364 VTMTTVGYGDMYPTTLLGKLIGFVAVVCGVLTIALPVPVVVSNFEYFYTKERNRRKTEE--VRKEHEKQLEERKS----SSNMFRKMICRKSRK 451          
BLAST of EWM24407.1 vs. NCBI_GenBank
Match: gi|669315461|gb|KFD58908.1| (hypothetical protein M513_00071, partial [Trichuris suis] >gi|669332772|gb|KFD72936.1| hypothetical protein M514_00071, partial [Trichuris suis])

HSP 1 Score: 62.3882 bits (150), Expect = 3.802e-7
Identity = 62/179 (34.64%), Postives = 84/179 (46.93%), Query Frame = 0
Query:    1 MTATTVGFGDFYPTSTLGRFVAIVAAYTGIVGIALPSTIIGKSFIDVYFRV---LEERKKEEQLLKAEREREEEARKARGDTGTGLMALLCCRRRRRAPAVVPGMEGGREGGKEGGKEGGKEGGRLVGGLKTEADSTPSQSPRRPWRDFYIERENTVAQRVLRKEKELAEEKAKEDALV 176
            +T TTVG+GD  P + LG  V  + A TG++ IALP  +I  +F   Y       +  KK  ++L  E+ R +  RKA GD GTGL+              VPG  G RE       +G  E   L GGL  EA+   S SPR   RD + +R    A+  L     ++E K  +  LV
Sbjct:  489 VTMTTVGYGDMTPKTYLGMIVGSLCALTGVLTIALPVPVIVSNFAMFYSHTQARAKLPKKRRRVLPLEQARMQTRRKAIGD-GTGLLY-----------GRVPG--GQRESKGILSLKGQLEQCILAGGLD-EAEPILS-SPR---RDRHSQRVIANAKSTLYAFNSVSEAKPTQVKLV 648          
BLAST of EWM24407.1 vs. NCBI_GenBank
Match: gi|1207908327|ref|XP_021361729.1| (potassium voltage-gated channel protein egl-36-like [Mizuhopecten yessoensis] >gi|1207908329|ref|XP_021361737.1| potassium voltage-gated channel protein egl-36-like [Mizuhopecten yessoensis] >gi|1207908331|ref|XP_021361746.1| potassium voltage-gated channel protein egl-36-like [Mizuhopecten yessoensis])

HSP 1 Score: 61.2326 bits (147), Expect = 6.868e-7
Identity = 33/79 (41.77%), Postives = 50/79 (63.29%), Query Frame = 0
Query:    1 MTATTVGFGDFYPTSTLGRFVAIVAAYTGIVGIALPSTIIGKSFIDVYFRVL------EERKKEEQLLKAEREREEEAR 73
            +T TTVG+GD YPTST+GR VA + A TG+  +A+P  II K+F  +Y R+L      +E++K ++ +K       +AR
Sbjct:  349 ITMTTVGYGDVYPTSTVGRIVASLCAMTGLFLLAMPIGIISKNFTYLYTRLLHREHHCKEKRKFKKTIKFTSLPNGDAR 427          
The following BLAST results are available for this feature:
BLAST of EWM24407.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105818|gb|EWM24407.1|0.000e+0100.00kef-type k+ transport systems -binding component [... [more]
gi|585105819|gb|EWM24408.1|1.168e-162100.00kef-type k+ transport systems -binding component [... [more]
gi|597758161|ref|XP_007240797.1|1.539e-845.78PREDICTED: potassium voltage-gated channel subfami... [more]
gi|255085925|ref|XP_002508929.1|4.362e-841.10voltage-gated ion channel superfamily [Micromonas ... [more]
gi|303287769|ref|XP_003063173.1|5.870e-842.25voltage-gated ion channel superfamily [Micromonas ... [more]
gi|966648727|gb|KTF83637.1|1.173e-748.61hypothetical protein cypCar_00030994 [Cyprinus car... [more]
gi|130492250|ref|NP_001076280.1|2.663e-750.00potassium voltage-gated channel, subfamily F, memb... [more]
gi|88976032|gb|ABD59027.1|3.534e-735.11voltage-gated potassium channel [Physalia physalis... [more]
gi|669315461|gb|KFD58908.1|3.802e-734.64hypothetical protein M513_00071, partial [Trichuri... [more]
gi|1207908327|ref|XP_021361729.1|6.868e-741.77potassium voltage-gated channel protein egl-36-lik... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6280rna6280Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications