EWM24414.1, cds6260 (CDS) Nannochloropsis gaditana

Overview
NameEWM24414.1
Unique Namecds6260
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:153176..153811 +
Alignment locationCM002468.1:154101..154220 +

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Properties
Property NameValue
End range.
End range154220
Protein idEWM24414.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101484g1.5465.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:153176..153811 +
CM002468.1supercontigCM002468.1:154101..154220 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0046872metal ion binding
Vocabulary: INTERPRO
TermDefinition
IPR011237Pept_M16_dom
Homology
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BLAST of EWM24414.1 vs. NCBI_GenBank
Match: gi|585105834|gb|EWM24414.1| (hypothetical protein Naga_101484g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 503.827 bits (1296), Expect = 2.983e-180
Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 0 
Query:    1 MAERVIQCPRQKLRRRGFSIKPPLRHLSLLCAALLSLLRRGWVPCSTAFSPRPHGRHSQRPPLQFQTRGWKGMGEAKWAGSRTRNAIVTSHGEAFSGPGNEDIDPAPSPPTLPPSSSQITPGPALSPLTSPVPDGPQDPARPSCHAHGPDRRRVVVGGGSTLLFALSLVNRHLGGKEGTPSSVAYADEGGRGLPAMEDQDVLTYPGKTLLFKGSIEKSPADTKEYRALTLGNGLRVLLVSDPGREGGREGGR 252
            MAERVIQCPRQKLRRRGFSIKPPLRHLSLLCAALLSLLRRGWVPCSTAFSPRPHGRHSQRPPLQFQTRGWKGMGEAKWAGSRTRNAIVTSHGEAFSGPGNEDIDPAPSPPTLPPSSSQITPGPALSPLTSPVPDGPQDPARPSCHAHGPDRRRVVVGGGSTLLFALSLVNRHLGGKEGTPSSVAYADEGGRGLPAMEDQDVLTYPGKTLLFKGSIEKSPADTKEYRALTLGNGLRVLLVSDPGREGGREGGR
Sbjct:    1 MAERVIQCPRQKLRRRGFSIKPPLRHLSLLCAALLSLLRRGWVPCSTAFSPRPHGRHSQRPPLQFQTRGWKGMGEAKWAGSRTRNAIVTSHGEAFSGPGNEDIDPAPSPPTLPPSSSQITPGPALSPLTSPVPDGPQDPARPSCHAHGPDRRRVVVGGGSTLLFALSLVNRHLGGKEGTPSSVAYADEGGRGLPAMEDQDVLTYPGKTLLFKGSIEKSPADTKEYRALTLGNGLRVLLVSDPGREGGREGGR 252
The following BLAST results are available for this feature:
BLAST of EWM24414.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585105834|gb|EWM24414.1|2.983e-180100.00hypothetical protein Naga_101484g1, partial [Nanno... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6275rna6275Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications