rna6275, rna6275 (mRNA) Nannochloropsis gaditana

Overview
Namerna6275
Unique Namerna6275
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length612
Alignment locationCM002468.1:153080..154220 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101484g1.5465.mrna
Orig protein idgnl|cribi|Naga_101484g1.5465
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:153080..154220 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101484g1gene6068Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6275rna6275-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24414.1cds6260Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6275 ID=rna6275|Name=rna6275|organism=Nannochloropsis gaditana|type=mRNA|length=612bp
AAATTTGTCCCTTGAAGCCATCGGAGGACAGCATCCATTGACCGGACAAC
GCATGCACATCCATATTCATGCTCACAGGTCGTCGGAGCCATGGATAAAA
GTGGGGGAGGAGAGGCAAAGCTCGTTATGGGGTTGGCTATAGGGAGTGCT
TTCACGCGAGCTGCAACTGCTCTGATAAGCTGCCCGACTGCCTCAGGAGC
TGGCATGGGGGACAAAGGGTCAAATTTAGTCCTGATGCGTCCCGAAATCG
TGGTGAACGCAGACGGAGACCGAGCGATCCCAACTTTGGTGGCTTTACGA
AAGGAGGAGGAAGGAGGGAAGGAAGGGGAGTGGTTAGTTGGGAGTGCCGC
CAAGACCGCCATGGGAGGACGGTATAATGCCCAAGTGCAATCGTGGCAAG
GTGTAAAGATATTGCAAAGCTTCATGGGGGAGAAAGAGGAGGAGGAGGTG
GAGGACGAGGAAGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAG
GGAAAGAGAAAGGAAGGTGGGGATGGAGGAGGTGTGCGGCCAGCTTCTTC
AGCATGTGATTGAGCAGGCGGAAAATTTCAGTGGGGTGAGACCGGAGGGT
CAGCAGGACTGA
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protein sequence of rna6275

>rna6275-protein ID=rna6275-protein|Name=rna6275|organism=Nannochloropsis gaditana|type=polypeptide|length=252bp
MAERVIQCPRQKLRRRGFSIKPPLRHLSLLCAALLSLLRRGWVPCSTAFS
PRPHGRHSQRPPLQFQTRGWKGMGEAKWAGSRTRNAIVTSHGEAFSGPGN
EDIDPAPSPPTLPPSSSQITPGPALSPLTSPVPDGPQDPARPSCHAHGPD
RRRVVVGGGSTLLFALSLVNRHLGGKEGTPSSVAYADEGGRGLPAMEDQD
VLTYPGKTLLFKGSIEKSPADTKEYRALTLGNGLRVLLVSDPGREGGREG
GR
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mRNA from alignment at CM002468.1:153080..154220+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6275 ID=rna6275|Name=rna6275|organism=Nannochloropsis gaditana|type=mRNA|length=1141bp|location=Sequence derived from alignment at CM002468.1:153080..154220+ (Nannochloropsis gaditana)
ccccacaGCGTACAAAGTACTTCGACATCGCCTCATCGTACCTTGAGGGC
TTACCAGCGCTCGTGTGACTGCAATTAAGGCAAATTATACACCATTATGG
CTGAAAGAGTGATTCAATGCCCAAGACAAAAATTAAGACGGCGGGGTTTT
TCAATCAAGCCCCCCTTGCGTCACCTTTCACTCCTGTGTGCGGCGTTACT
TTCCCTTCTGCGAAGAGGATGGGTGCCATGCTCAAcggccttctctcccc
gcccgcacGGGAGGCATTCGCAGCGCCCTCCGCTACAATTCCAGACGCGC
GGGTGGAAGGGCATGGGAGAAGCCAAGTGGGCAGGCAGCCGGACACGAAA
CGCCATCGTCACGTCCCACGGGGAAGCCTTCTCGGGGCCAGGCAACGAGG
ACATAgaccctgctccctctcctcctacccttccgccgtcctcctcccag
ataACCCCCGgacctgccctttccccattGACGTCGCCTGTCCCTGACGG
TCCACAAGATCCGGCCCGTCCTTCTTGCCACGCGCACGGACCCGATCGAC
GACGCgtcgtggtgggggggggtagCACCTTACTCTTTGCCCTCAGCCTG
GTCAACCGCCacctgggaggaaaggaaggaacgCCATCCTCCGTGGCCTA
TGCCGAcgaaggcgggcgaggctTGCCCGCCATGGAGGACCAGGACGTGC
TCACTTACCCTGGGAAAACTCTGCTTTTCAAGGTACCGTTGACGGGATGA
AAACCGTTTCTGGCCGTTGCACAGACGTTGCTCGGACGTTGGACGCCGTT
TGGTGCCCTTTGACGCGGTCACGGGCATCGTTCAGACCCTTTGCTCATCT
GCTTGCCTCGTATTTTCCTTCCTAGTGCCTAGTCTTGCCCCCACTCCAGC
CTGCAGCCACAAGTTTCACTACAaactctttctccctccctctctccctc
cctccctccctccctccatccctccctcttcccctcccttccttccgacA
TACCGCGCTGCCCACGTCCAGGGATCGATCGAGAAATCTCCGGCAGATAC
CAAAGAGTACCGTGCCCTGACCTTAGGCAACGGTTTGAGGGTGCTCTTGG
TCTCGGAcccaggtagggagggagggagggagggagggagg
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Coding sequence (CDS) from alignment at CM002468.1:153080..154220+

>rna6275 ID=rna6275|Name=rna6275|organism=Nannochloropsis gaditana|type=CDS|length=1512bp|location=Sequence derived from alignment at CM002468.1:153080..154220+ (Nannochloropsis gaditana)
ATGGCTGAAAGAGTGATTCAATGCCCAAGACAAAAATTAAGACGGCGGGG
TTTTTCAATCAAGCCCCCCTTGCGTCACCTTTCACTCCTGTGTGCGGCGT
TACTTTCCCTTCTGCGAAGAGGATGGGTGCCATGCTCAAcggccttctct
ccccgcccgcacGGGAGGCATTCGCAGCGCCCTCCGCTACAATTCCAGAC
GCGCGGGTGGAAGGGCATGGGAGAAGCCAAGTGGGCAGGCAGCCGGACAC
GAAACGCCATCGTCACGTCCCACGGGGAAGCCTTCTCGGGGCCAGGCAAC
GAGGACATAgaccctgctccctctcctcctacccttccgccgtcctcctc
ccagataACCCCCGgacctgccctttccccattGACGTCGCCTGTCCCTG
ACGGTCCACAAGATCCGGCCCGTCCTTCTTGCCACGCGCACGGACCCGAT
CGACGACGCgtcgtggtgggggggggtagCACCTTACTCTTTGCCCTCAG
CCTGGTCAACCGCCacctgggaggaaaggaaggaacgCCATCCTCCGTGG
CCTATGCCGAcgaaggcgggcgaggctTGCCCGCCATGGAGGACCAGGAC
GTGCTCACTTACCCTGGGAAAACTCTGCTTTTCAAGGGATCGATCGAGAA
ATCTCCGGCAGATACCAAAGAGTACCGTGCCCTGACCTTAGGCAACGGTT
TGAGGGTGCTCTTGGTCTCGGAcccaggtagggagggagggagggaggga
gggaggATGGCTGAAAGAGTGATTCAATGCCCAAGACAAAAATTAAGACG
GCGGGGTTTTTCAATCAAGCCCCCCTTGCGTCACCTTTCACTCCTGTGTG
CGGCGTTACTTTCCCTTCTGCGAAGAGGATGGGTGCCATGCTCAAcggcc
ttctctccccgcccgcacGGGAGGCATTCGCAGCGCCCTCCGCTACAATT
CCAGACGCGCGGGTGGAAGGGCATGGGAGAAGCCAAGTGGGCAGGCAGCC
GGACACGAAACGCCATCGTCACGTCCCACGGGGAAGCCTTCTCGGGGCCA
GGCAACGAGGACATAgaccctgctccctctcctcctacccttccgccgtc
ctcctcccagataACCCCCGgacctgccctttccccattGACGTCGCCTG
TCCCTGACGGTCCACAAGATCCGGCCCGTCCTTCTTGCCACGCGCACGGA
CCCGATCGACGACGCgtcgtggtgggggggggtagCACCTTACTCTTTGC
CCTCAGCCTGGTCAACCGCCacctgggaggaaaggaaggaacgCCATCCT
CCGTGGCCTATGCCGAcgaaggcgggcgaggctTGCCCGCCATGGAGGAC
CAGGACGTGCTCACTTACCCTGGGAAAACTCTGCTTTTCAAGGGATCGAT
CGAGAAATCTCCGGCAGATACCAAAGAGTACCGTGCCCTGACCTTAGGCA
ACGGTTTGAGGGTGCTCTTGGTCTCGGAcccaggtagggagggagggagg
gagggagggagg
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Synonyms
Publications