rna6274, rna6274 (mRNA) Nannochloropsis gaditana

Overview
Namerna6274
Unique Namerna6274
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length471
Alignment locationCM002468.1:151824..152676 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101484g2.5464.mrna
Orig protein idgnl|cribi|Naga_101484g2.5464
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:151824..152676 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101484g2gene6067Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6274rna6274-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24413.1cds6259Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6274 ID=rna6274|Name=rna6274|organism=Nannochloropsis gaditana|type=mRNA|length=471bp
ATGAAGGGAGAAAACGGGGCCGGAAGGCTTCTACCAGCCGCCCTACCACG
GCTTGCGGCATCCCCTCATTTTCTAGTAGGCCACCCAGCCGTCCTCTACG
TAAACAAGTTTCGCGTAGCGGGTCTCTTGAACGGCCCCATTAACGGCCAT
TTTGAATCGCTTTTTGAAACGGGCGTGGATGAGATGTCGTGGGACGACAT
GACCAAGAACTTCAAGGCCTGGCCGTCCGTATCGGAAGTTCGGGATTATC
GCCGACAGGTCTACGAAGCCGTGCGCCACGTCATCCTCACCCACCCGGCC
TTCCCCTCCCTGGAGAAAGAGGTAGGGAGGGAAGAGCGGAGGGAGGGAGG
GAGGGAGGGACGGCGGGAGGGCGGGGAGGAGAGACAGACGAGGATTCTCC
GGAGGCGACCGGACCGACATTTCCCTCCCCATGCCTCAACTCTTCTTCCC
CCGTTCCCGCCCTTTCTTTAG
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protein sequence of rna6274

>rna6274-protein ID=rna6274-protein|Name=rna6274|organism=Nannochloropsis gaditana|type=polypeptide|length=173bp
MDKSGGGEAKLVMGLAIGSAFTRAATALISCPTASGAGMGDKGSNLVLMR
PEIVVNADGDRAIPTLVALRKEEEGGKEGEWLVGSAAKTAMGGRYNAQVQ
SWQGVKILQSFMGEKEEEEVEDEEEEEEEEEEEEEERERERKVGMEEVCG
QLLQHVIEQAENFSGVRPEGQQD
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mRNA from alignment at CM002468.1:151824..152676-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6274 ID=rna6274|Name=rna6274|organism=Nannochloropsis gaditana|type=mRNA|length=853bp|location=Sequence derived from alignment at CM002468.1:151824..152676- (Nannochloropsis gaditana)
AAATTTGTCCCTTGAAGCCATCGGAGGACAGCATCCATTGACCGGACAAC
GCATGCACATCCATATTCATGCTCACAGGTCGTCGGAGCCATGGATAAAA
GTGGGGGAGGAGAGGCAAAGCTCGTTATGGGGTTGGCTATAGGGAGTGCT
TTCACGCGAGCTGCAACTGCTCTGATAAGCTGCCCGACTGCCTCAGGAGC
TGGCATGGGGGACAAAGGGTCAAATTTAGTCCTGATGCGTCCCGAAATCG
TGGTGAACGCAGACGGAGACCGAGCGATCCCAACTTTGGTGGCTTTACGA
AAGGAGGAGGAAGGAGGGAAGGAAGGGGAGTGGTTAGTTGGGGTACGTGA
ATGACGAGGGGGTTTTCTTGGATTTTCACATCACGTGCGAATATTGGTGT
CGTATCTATTCGAAGACGTTGCTTTTCATGTACATGCTTGCTTTATTCTC
GGGGAGTGGAGGTGCGTCGAACACAGTGCACATTGCAACGAATCAAAGAT
GTGTCTAGCCTCTCTATCCTTCCTCTTTCCCTCTCCTCATTGTACTCTTC
GTTTTATTACCTTCTGACCGATTTTCCTTACAGAGTGCCGCCAAGACCGC
CATGGGAGGACGGTATAATGCCCAAGTGCAATCGTGGCAAGGTGTAAAGA
TATTGCAAAGCTTCATGGGGGAGAAAGAGGAGGAGGAGGTGGAGGACGAG
GAAGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAGGGAAAGAGA
AAGGAAGGTGGGGATGGAGGAGGTGTGCGGCCAGCTTCTTCAGCATGTGA
TTGAGCAGGCGGAAAATTTCAGTGGGGTGAGACCGGAGGGTCAGCAGGAC
TGA
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Coding sequence (CDS) from alignment at CM002468.1:151824..152676-

>rna6274 ID=rna6274|Name=rna6274|organism=Nannochloropsis gaditana|type=CDS|length=1044bp|location=Sequence derived from alignment at CM002468.1:151824..152676- (Nannochloropsis gaditana)
AGTGCCGCCAAGACCGCCATGGGAGGACGGTATAATGCCCAAGTGCAATC
GTGGCAAGGTGTAAAGATATTGCAAAGCTTCATGGGGGAGAAAGAGGAGG
AGGAGGTGGAGGACGAGGAAGAGGAAGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGAGGGAAAGAGAAAGGAAGGTGGGGATGGAGGAGGTGTGCGGCCA
GCTTCTTCAGCATGTGATTGAGCAGGCGGAAAATTTCAGTGGGGTGAGAC
CGGAGGGTCAGCAGGACTGAATGGATAAAAGTGGGGGAGGAGAGGCAAAG
CTCGTTATGGGGTTGGCTATAGGGAGTGCTTTCACGCGAGCTGCAACTGC
TCTGATAAGCTGCCCGACTGCCTCAGGAGCTGGCATGGGGGACAAAGGGT
CAAATTTAGTCCTGATGCGTCCCGAAATCGTGGTGAACGCAGACGGAGAC
CGAGCGATCCCAACTTTGGTGGCTTTACGAAAGGAGGAGGAAGGAGGGAA
GGAAGGGGAGTGGTTAGTTGGGAGTGCCGCCAAGACCGCCATGGGAGGAC
GGTATAATGCCCAAGTGCAATCGTGGCAAGGTGTAAAGATATTGCAAAGC
TTCATGGGGGAGAAAGAGGAGGAGGAGGTGGAGGACGAGGAAGAGGAAGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGAGGGAAAGAGAAAGGAAGGTGG
GGATGGAGGAGGTGTGCGGCCAGCTTCTTCAGCATGTGATTGAGCAGGCG
GAAAATTTCAGTGGGGTGAGACCGGAGGGTCAGCAGGACTGAATGGATAA
AAGTGGGGGAGGAGAGGCAAAGCTCGTTATGGGGTTGGCTATAGGGAGTG
CTTTCACGCGAGCTGCAACTGCTCTGATAAGCTGCCCGACTGCCTCAGGA
GCTGGCATGGGGGACAAAGGGTCAAATTTAGTCCTGATGCGTCCCGAAAT
CGTGGTGAACGCAGACGGAGACCGAGCGATCCCAACTTTGGTGGCTTTAC
GAAAGGAGGAGGAAGGAGGGAAGGAAGGGGAGTGGTTAGTTGGG
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Synonyms
Publications