EWM24413.1, cds6259 (CDS) Nannochloropsis gaditana

Overview
NameEWM24413.1
Unique Namecds6259
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:152335..152586 -
Alignment locationCM002468.1:151824..152093 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24413.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101484g2.5464.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:152335..152586 -
CM002468.1supercontigCM002468.1:151824..152093 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM24413.1 vs. NCBI_GenBank
Match: gi|585105833|gb|EWM24413.1| (hypothetical protein Naga_101484g2 [Nannochloropsis gaditana])

HSP 1 Score: 339.732 bits (870), Expect = 6.165e-118
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0
Query:    1 MDKSGGGEAKLVMGLAIGSAFTRAATALISCPTASGAGMGDKGSNLVLMRPEIVVNADGDRAIPTLVALRKEEEGGKEGEWLVGSAAKTAMGGRYNAQVQSWQGVKILQSFMGEKEEEEVEDEEEEEEEEEEEEEERERERKVGMEEVCGQLLQHVIEQAENFSGVRPEGQQD 173
            MDKSGGGEAKLVMGLAIGSAFTRAATALISCPTASGAGMGDKGSNLVLMRPEIVVNADGDRAIPTLVALRKEEEGGKEGEWLVGSAAKTAMGGRYNAQVQSWQGVKILQSFMGEKEEEEVEDEEEEEEEEEEEEEERERERKVGMEEVCGQLLQHVIEQAENFSGVRPEGQQD
Sbjct:    1 MDKSGGGEAKLVMGLAIGSAFTRAATALISCPTASGAGMGDKGSNLVLMRPEIVVNADGDRAIPTLVALRKEEEGGKEGEWLVGSAAKTAMGGRYNAQVQSWQGVKILQSFMGEKEEEEVEDEEEEEEEEEEEEEERERERKVGMEEVCGQLLQHVIEQAENFSGVRPEGQQD 173          
The following BLAST results are available for this feature:
BLAST of EWM24413.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585105833|gb|EWM24413.1|6.165e-118100.00hypothetical protein Naga_101484g2 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6274rna6274Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications