rna6270, rna6270 (mRNA) Nannochloropsis gaditana

Overview
Namerna6270
Unique Namerna6270
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length470
Alignment locationCM002468.1:137958..138522 +

Link to JBrowse

Properties
Property NameValue
Productpeptidase s8 and s53 subtilisin kexin sedolisin
Orig transcript idgnl|cribi|Naga_101217g2.3071.mrna
Orig protein idgnl|cribi|Naga_101217g2.3071
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:137958..138522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101217g2gene6063Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6270rna6270-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24418.1cds6255Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6270 ID=rna6270|Name=rna6270|organism=Nannochloropsis gaditana|type=mRNA|length=470bp
TCCCTCCCTCCCGACCCCAACAGTACAACCCGGACCAAATGGTGGTCGTA
TCCCTTTCCTTGGGCGCTACCTACTCGGCGACCGTGAACAGGGCCGTGGA
GGCCCTCACTGCCCAGGGGATCCCCTGCGTAGTGGCAGCCGGGAACTCGA
ACGTCGACGCCGCCAACGCCAGTCCCGCTTCCTCCGCAGGCGCCATCACC
GTGGCGGCCACGGGCAAAACGGACCTACGGGAATGTGAGTGCGAGGATGG
GTGGGAGGGAGGGAGGGAAGGAGGGAAGGAGAGGCGGGGGGGCGTTTGGG
GGTGGAGGGGATACGAACGGGTCGAATCATCCTTTTCTTTATCACCTCCG
CTCCCTACTTCTTCCTTCCTTTGAATGTGCCAATGGCTTCATTTCTCGTC
TTCCTTTTCCTCATACCGACCACCTCGTCTATACCTCCACTCATCCTTCC
CCCTCGCCTTCCCCCCGCCC
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protein sequence of rna6270

>rna6270-protein ID=rna6270-protein|Name=rna6270|organism=Nannochloropsis gaditana|type=polypeptide|length=113bp
LPPSLPPSFQPAYSNWGRVVDIYAPGGGIYSASNAGNNQYTYLSGTSMST
PLVAGGVACVLAGDPGRSCSNDALVRKLINPSVDVAQGGPLQANMRPNRP
LFYLPPDADVKCP
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mRNA from alignment at CM002468.1:137958..138522+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6270 ID=rna6270|Name=rna6270|organism=Nannochloropsis gaditana|type=mRNA|length=565bp|location=Sequence derived from alignment at CM002468.1:137958..138522+ (Nannochloropsis gaditana)
ctccctccctccctccctccctccttccaaccaGCCTACAGCAATTGGGG
CCGTGTCGTCGACATCTATGCCCCAGGCGGTGGCATTTACTCTGCCTCCA
ACGCGGGAAACAATCAGTACACTTATTTGAGCGGCACTTCCATGTCCACC
CCCCTggtggcgggaggagtgGCCTGTGTGCTCGCGGGCGACCCGGGCAG
GTCGTGCTCGAATGACGCGTTGGTCCGCAAACTCATTAATCCATCCGTAG
ACGTCGCGCAGGGGGGACCGCTGCAAGCTAATATGCGTCCAAACCGTCCT
TTGTTCTATTTACCCCCGGACGCGGACGTGAAGTGCCCTTGAGGAGcgaa
tgaggaaggagaaagtaGCAAGCTGGGGGCAGCtgtgggagaaagaggta
gGAAATTATGGAATTTATTCAACTGGACAACAGCGAGAAGAATATGAGTA
CCAGAATTCAAATTAGCCAGCCGCAAGTGATGGGGCCTTTAAAAAAtttg
aaagaaagaaagagtcTTCACCATGAATGAGTGCTCTGTATCTTGTAAGT
GCCTTTTTCTAGTAT
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Coding sequence (CDS) from alignment at CM002468.1:137958..138522+

>rna6270 ID=rna6270|Name=rna6270|organism=Nannochloropsis gaditana|type=CDS|length=342bp|location=Sequence derived from alignment at CM002468.1:137958..138522+ (Nannochloropsis gaditana)
ctccctccctccctccctccctccttccaaccaGCCTACAGCAATTGGGG
CCGTGTCGTCGACATCTATGCCCCAGGCGGTGGCATTTACTCTGCCTCCA
ACGCGGGAAACAATCAGTACACTTATTTGAGCGGCACTTCCATGTCCACC
CCCCTggtggcgggaggagtgGCCTGTGTGCTCGCGGGCGACCCGGGCAG
GTCGTGCTCGAATGACGCGTTGGTCCGCAAACTCATTAATCCATCCGTAG
ACGTCGCGCAGGGGGGACCGCTGCAAGCTAATATGCGTCCAAACCGTCCT
TTGTTCTATTTACCCCCGGACGCGGACGTGAAGTGCCCTTGA
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Synonyms
Publications