EWM24418.1, cds6255 (CDS) Nannochloropsis gaditana

Overview
NameEWM24418.1
Unique Namecds6255
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:137958..138299 +

Link to JBrowse

Properties
Property NameValue
Start range137958
Start range.
Protein idEWM24418.1
Productpeptidase s8 and s53 subtilisin kexin sedolisin
Partialtrue
Orig transcript idgnl|cribi|Naga_101217g2.3071.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:137958..138299 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0004252serine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0019538protein metabolic process
GO:0006508proteolysis
Vocabulary: INTERPRO
TermDefinition
IPR023828Peptidase_S8_Ser-AS
IPR015500Peptidase_S8_subtilisin-rel
IPR000209Peptidase_S8/S53_dom
Homology
BLAST of EWM24418.1 vs. NCBI_GenBank
Match: gi|585105845|gb|EWM24418.1| (peptidase s8 and s53 subtilisin kexin sedolisin, partial [Nannochloropsis gaditana])

HSP 1 Score: 226.098 bits (575), Expect = 6.318e-75
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0
Query:    1 LPPSLPPSFQPAYSNWGRVVDIYAPGGGIYSASNAGNNQYTYLSGTSMSTPLVAGGVACVLAGDPGRSCSNDALVRKLINPSVDVAQGGPLQANMRPNRPLFYLPPDADVKCP 113
            LPPSLPPSFQPAYSNWGRVVDIYAPGGGIYSASNAGNNQYTYLSGTSMSTPLVAGGVACVLAGDPGRSCSNDALVRKLINPSVDVAQGGPLQANMRPNRPLFYLPPDADVKCP
Sbjct:    1 LPPSLPPSFQPAYSNWGRVVDIYAPGGGIYSASNAGNNQYTYLSGTSMSTPLVAGGVACVLAGDPGRSCSNDALVRKLINPSVDVAQGGPLQANMRPNRPLFYLPPDADVKCP 113          
BLAST of EWM24418.1 vs. NCBI_GenBank
Match: gi|553179146|ref|XP_005852656.1| (proprotein convertase subtilisin kexin type 9 preproprotein [Nannochloropsis gaditana CCMP526] >gi|422295878|gb|EKU23177.1| proprotein convertase subtilisin kexin type 9 preproprotein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 77.411 bits (189), Expect = 3.011e-14
Identity = 48/113 (42.48%), Postives = 64/113 (56.64%), Query Frame = 0
Query:   10 QPAYSNWGRVVDIYAPGGGIYSASNAGNNQYTYLSGTSMSTPLVAGGVACVL-----AGDPGRSCSNDALVRKLINPSVDVAQ--GGPLQANMRPNRPLFYLPPDA--DVKCP 113
            + AYSN G  VDIYAPG  I+SA    +  Y Y +GTS + P V G +ACVL     A  P    S+ +L+  LINP+++V     GP Q+     RP  Y+PP A  D++CP
Sbjct:  509 REAYSNQGTAVDIYAPGTNIFSAGIENDQAYGYRTGTSQAAPFVTGAIACVLGDALAANGPVACRSSSSLLEALINPNIEVKHRTRGP-QSFGDNKRPFLYVPPGAKYDLRCP 620          
BLAST of EWM24418.1 vs. NCBI_GenBank
Match: gi|585104171|gb|EWM23228.1| (proprotein convertase subtilisin kexin type 9 preproprotein [Nannochloropsis gaditana])

HSP 1 Score: 77.0258 bits (188), Expect = 3.251e-14
Identity = 48/113 (42.48%), Postives = 64/113 (56.64%), Query Frame = 0
Query:   10 QPAYSNWGRVVDIYAPGGGIYSASNAGNNQYTYLSGTSMSTPLVAGGVACVL-----AGDPGRSCSNDALVRKLINPSVDVAQ--GGPLQANMRPNRPLFYLPPDA--DVKCP 113
            + AYSN G  VDIYAPG  I+SA    +  Y Y +GTS + P V G +ACVL     A  P    S+ +L+  LINP+++V     GP Q+     RP  Y+PP A  D++CP
Sbjct:  502 REAYSNQGTAVDIYAPGTNIFSAGIENDQAYGYRTGTSQAAPFVTGAIACVLGDALAANGPVACRSSSSLLEALINPNIEVKHRTRGP-QSFGDNKRPFLYVPPGAKYDLRCP 613          
BLAST of EWM24418.1 vs. NCBI_GenBank
Match: gi|1183348428|gb|ORX76905.1| (subtilisin-like protein, partial [Anaeromyces robustus])

HSP 1 Score: 61.2326 bits (147), Expect = 1.090e-8
Identity = 40/115 (34.78%), Postives = 59/115 (51.30%), Query Frame = 0
Query:   10 QPAYSNWGRVVDIYAPGGGIY-SASNAGNNQYTYLSGTSMSTPLVAGGVACVLAGDPGRSCSNDALVRKLINPS-----VDVAQGGPLQANMRPNRPL------FYLPPDADVKC 112
            + +YSN+G  VDIYAPG   Y +  N     YT + GTS +TP+VAG  A +++  P    +N+ + +KLI  S     VD+ + G       PNR +       Y P D ++ C
Sbjct:   24 KASYSNYGDCVDIYAPGEVTYPNIFNGSTKDYTSIHGTSCATPIVAGVAASIMSEHPEIKFNNELMKKKLIEMSIKDVIVDLKKRGSKDT---PNRFINNGKRSIYSPDDGNIYC 135          
BLAST of EWM24418.1 vs. NCBI_GenBank
Match: gi|1134544656|gb|OMH82280.1| (Subtilase-type proteinase psp3 [Zancudomyces culisetae] >gi|1134544738|gb|OMH82346.1| Subtilase-type proteinase psp3 [Zancudomyces culisetae])

HSP 1 Score: 60.8474 bits (146), Expect = 1.399e-8
Identity = 30/55 (54.55%), Postives = 38/55 (69.09%), Query Frame = 0
Query:   11 PAYSNWGRVVDIYAPGGGIYSASNAGNNQYTYLSGTSMSTPLVAGGVACVLAGDP 65
            P +SNWG+ VDI APG  I S+SNAG +Q    SGTSM+ P V G VA +L+ +P
Sbjct:  373 PTWSNWGKCVDILAPGTRIISSSNAGGDQTIVKSGTSMAAPFVTGVVAAMLSDNP 427          
BLAST of EWM24418.1 vs. NCBI_GenBank
Match: gi|943930828|ref|WP_055564303.1| (serine protease [Streptomyces atriruber])

HSP 1 Score: 60.8474 bits (146), Expect = 1.424e-8
Identity = 35/80 (43.75%), Postives = 46/80 (57.50%), Query Frame = 0
Query:   10 QPAYSNWGRVVDIYAPGGGIYSASNAGNNQYTYLSGTSMSTPLVAGGVACVLAGDP-------GRSCSNDALVRKLINPS 82
            Q  +SN+G VVDIYAPG  I S  N G++    +SGTSM+TP V G  A  LAG P        ++ ++ A   K+ NPS
Sbjct:  311 QSDFSNYGSVVDIYAPGSDITSDWNTGDDATNTISGTSMATPHVVGAAAVYLAGHPDAKPADVAKALTDGATADKISNPS 390          
BLAST of EWM24418.1 vs. NCBI_GenBank
Match: gi|1111316137|gb|APH72151.1| (hypothetical protein BSQ44_12845 [Mesorhizobium sp. B7])

HSP 1 Score: 60.8474 bits (146), Expect = 1.971e-8
Identity = 37/114 (32.46%), Postives = 58/114 (50.88%), Query Frame = 0
Query:    1 LPPSLPPSFQPAYSNWGRVVDIYAPGGGIYSA--SNAGNNQYTYLSGTSMSTPLVAGGVACVLAGDPGRSCSNDALVRKLINPSVDVAQGGPLQANMRPNRPLFYLPPDADVKC 112
            +  S     + ++SNWG ++D+ APG  I ++  S + NN Y YLSGTSM+ P VAG  A + +  P  + S   +   L    V+++  G  +  +R +  L YL   A  K 
Sbjct:  358 VASSTKSDVRSSFSNWGSLIDVVAPGSSILASYVSGSSNNFYDYLSGTSMAAPHVAGAFAALRSAKPTATVSQ--IEAALKATGVNISSAGTTKPRIRVDSALTYLGGGATAKA 469          
BLAST of EWM24418.1 vs. NCBI_GenBank
Match: gi|1180012371|ref|WP_083534725.1| (hypothetical protein [Mesorhizobium sp. B7])

HSP 1 Score: 60.8474 bits (146), Expect = 2.031e-8
Identity = 37/114 (32.46%), Postives = 58/114 (50.88%), Query Frame = 0
Query:    1 LPPSLPPSFQPAYSNWGRVVDIYAPGGGIYSA--SNAGNNQYTYLSGTSMSTPLVAGGVACVLAGDPGRSCSNDALVRKLINPSVDVAQGGPLQANMRPNRPLFYLPPDADVKC 112
            +  S     + ++SNWG ++D+ APG  I ++  S + NN Y YLSGTSM+ P VAG  A + +  P  + S   +   L    V+++  G  +  +R +  L YL   A  K 
Sbjct:  376 VASSTKSDVRSSFSNWGSLIDVVAPGSSILASYVSGSSNNFYDYLSGTSMAAPHVAGAFAALRSAKPTATVSQ--IEAALKATGVNISSAGTTKPRIRVDSALTYLGGGATAKA 487          
BLAST of EWM24418.1 vs. NCBI_GenBank
Match: gi|515934284|ref|WP_017364867.1| (serine protease [Methylococcus capsulatus])

HSP 1 Score: 60.4622 bits (145), Expect = 2.326e-8
Identity = 31/57 (54.39%), Postives = 40/57 (70.18%), Query Frame = 0
Query:   10 QPAYSNWGRVVDIYAPGGGIYSASNAGNNQYTYLSGTSMSTPLVAGGVACVLAGDPG 66
            + +YSN+G  +DI+APG  I SASNAG+N    +SGTSM+TP VAG  A  L+  PG
Sbjct:  304 RASYSNYGTCLDIFAPGSSITSASNAGDNATEVMSGTSMATPHVAGAAALYLSAFPG 360          
BLAST of EWM24418.1 vs. NCBI_GenBank
Match: gi|499262655|ref|WP_010960195.1| (serine protease [Methylococcus capsulatus] >gi|53758717|gb|AAU93008.1| serine protease, subtilase family [Methylococcus capsulatus str. Bath])

HSP 1 Score: 60.4622 bits (145), Expect = 2.348e-8
Identity = 31/57 (54.39%), Postives = 40/57 (70.18%), Query Frame = 0
Query:   10 QPAYSNWGRVVDIYAPGGGIYSASNAGNNQYTYLSGTSMSTPLVAGGVACVLAGDPG 66
            + +YSN+G  +DI+APG  I SASNAG+N    +SGTSM+TP VAG  A  L+  PG
Sbjct:  304 RASYSNYGTCLDIFAPGSSITSASNAGDNATEVMSGTSMATPHVAGAAALYLSAFPG 360          
The following BLAST results are available for this feature:
BLAST of EWM24418.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105845|gb|EWM24418.1|6.318e-75100.00peptidase s8 and s53 subtilisin kexin sedolisin, p... [more]
gi|553179146|ref|XP_005852656.1|3.011e-1442.48proprotein convertase subtilisin kexin type 9 prep... [more]
gi|585104171|gb|EWM23228.1|3.251e-1442.48proprotein convertase subtilisin kexin type 9 prep... [more]
gi|1183348428|gb|ORX76905.1|1.090e-834.78subtilisin-like protein, partial [Anaeromyces robu... [more]
gi|1134544656|gb|OMH82280.1|1.399e-854.55Subtilase-type proteinase psp3 [Zancudomyces culis... [more]
gi|943930828|ref|WP_055564303.1|1.424e-843.75serine protease [Streptomyces atriruber][more]
gi|1111316137|gb|APH72151.1|1.971e-832.46hypothetical protein BSQ44_12845 [Mesorhizobium sp... [more]
gi|1180012371|ref|WP_083534725.1|2.031e-832.46hypothetical protein [Mesorhizobium sp. B7][more]
gi|515934284|ref|WP_017364867.1|2.326e-854.39serine protease [Methylococcus capsulatus][more]
gi|499262655|ref|WP_010960195.1|2.348e-854.39serine protease [Methylococcus capsulatus] >gi|537... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6270rna6270Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications