rna6263, rna6263 (mRNA) Nannochloropsis gaditana

Overview
Namerna6263
Unique Namerna6263
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length857
Alignment locationCM002468.1:121019..122081 -

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Properties
Property NameValue
ProductZinc finger, CCCH-type
Orig transcript idgnl|cribi|Naga_101168g1.7369.mrna
Orig protein idgnl|cribi|Naga_101168g1.7369
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:121019..122081 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101168g1gene6056Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6263rna6263-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24424.1cds6248Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6263 ID=rna6263|Name=rna6263|organism=Nannochloropsis gaditana|type=mRNA|length=857bp
CCTCCCACAGTCAAAACACGGCGAACGTGCGTTCGTGTCCCATGTGCAAA
CAGATCTCTCACTTTGTCATCCCCCCACACTCACCACGTCACTGACCCGC
ACCGCAAGAAAAACCTCGTCCGGGCATACAAAGCACAAATGAACAAGAAA
CCCTGTAGATACTTCACCTACCAAGAGGGGGACGAGGAAGCCTCCTTCCA
GTCGTGTCCATTCGGAACCTCCTGCTTTTACGCGCATTTAAAGCACGATG
GCACCCCTCTGACCCCACCGCGCCTGAGAACGAGGATGGGGGAGGAAGGG
AGGGTGGAGGTAGTCCAAGAGGTAAAACTCTCGGATTTTCTGACGCAGGG
CCGGGGATAAAACGGCAGTTTCCGGTCGGTCCAGCGAGGAGGGGGGGCAC
CCCTTTGGGTTGGCCTGGGCGGTGCATGCGTGGCGACAAGACAGGACGCA
CGAAGGGCTCGATAGGATTAGCGATAGGATGGGATTGGAACGGAAGGAGA
AGCAAAGGGAGTGTAGACACCTCCCGGAAGGTTCCATGGATTTAGAGCAG
GGGAAGGGGAGTTGCCGATCCTCCCAAGCTCATGGTTAGCTAGTGCCAGC
GGAGGTGAAGCGGGCTATCTATCCGTGGCGAGCACAAAGGCGTGCAGCAT
GCACTGGAATAGGATAGTGAACAATGTGCACTTTCCGATGATGAAACCAT
GCGTGAAGCATGGGAAGTATGATGCATTTGACACTTTGAGCGCTAATCCA
CATTGAAACGCAAAAGGATGGCGCCCGATAAAATGGTCTAAAAGATGACG
TGGTACGCCAGAAAAAAATGTACCAATTCATGAAGAAGAAAAAAAAGTGT
CATGGAA
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protein sequence of rna6263

>rna6263-protein ID=rna6263-protein|Name=rna6263|organism=Nannochloropsis gaditana|type=polypeptide|length=242bp
MEETTRFHEERLPESPRRQARDGGRLQLPHQQPPQEQGLDQHPQVATQQP
EYGDGLHAFLGVTRGAAGGYPLYSLNLPSSPSSPPSSLLPPFLPPRASSP
RPPAPAAPLLASTTRPPHRTPEKTPCRFHAQPGGCASGHQCKFLHQIERD
QAGGRKGGRAREGVEGPGRRGHVALTKTQASFSSPNLTLLPLLPSPHPSV
TPYPRPPLRQSHHFQPAGNRGNRAPRSVAGEGGMEGGREGEG
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mRNA from alignment at CM002468.1:121019..122081-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6263 ID=rna6263|Name=rna6263|organism=Nannochloropsis gaditana|type=mRNA|length=1063bp|location=Sequence derived from alignment at CM002468.1:121019..122081- (Nannochloropsis gaditana)
ATGGAGGAGACAACACGGTTTCACGAGGAACGCCTGCCAGAGTCTCCCCG
GCGGCAAGCACGTGATGGGGGCCGGCTACAATTACCGCACCAACAGCCGC
CACAGGAGCAAGGACTTGATCAACATCCACAAGTCGCGACACAGCAGCCA
GAGTACGGGGATGGGCTCCATGCTTTTTTGGTAAGGCAGGGGCGGAATGA
ATCTCAGGAGCTCGCTTCTGACCCGTTGGCGACTTAATGGGCGAGAAACC
ATGTCCCCTCCGGCCTCTCACCCCTGCCTTCCCTCCCTCCCTCCCTCCCT
CCCTTCCTCCCTCCCTCCCTCCAGGGGGTCACCCGAGGGGCGGCGGGCGG
CTACCCTCTCTACAGCCTGAACCTCCCTTCCTCGCCTTCCTCCCCCCCTT
CCTCCCTCCTTCCCCCTTTCCTCCCCCCCCGGGCCTCCTCTCCCCGCCCA
CCGGCCCCAGCGGCCCCGCTTCTCGCCTCCACCACCCGTCCCCCTCACCG
GACGCCCGAGAAGACCCCCTGTCGTTTCCATGCCCAGCCCGGCGGATGTG
CCTCGGGGCATCAGTGCAAATTCCTCCACCAAATCGAGCGGGACCAGGCA
GGGGGAAGGAAGGGAGGGAGGGCGAGGGAAGGCGTGGAAGGACCGGGACG
ACGCGGGCATGTGGCCTTGACCAAGACTCAAGCCTCTTTCTCTTCCCCCA
ACCTGACCCTCCTACCGCTCTTGCCGTCCCCGCATCCCTCGGTAACGCCT
TACCCTCGCCCCCCATTGCGTCAATCCCACCATTTTCAACCGGCAGGGAA
TAGGGGCAACCGTGCTCCGCGCTCTGTGAAGGACGAGCATCCCTGCCTCT
CCCCTCTGGGAGCCGCCCTCCCCCTCCCACCTTCCTTCCCTCCCTTCGCC
ACCACGGCGGCCTTACCTCCCTTGCCCCTCCCGGCGTCCGCGCGCATCAC
CCCGTGCCGGTTTCATATCCGAGGCTACTGTCGCGCCGGACGGAAATGCC
CCTTTCTGCACCTAGGTCGCGGGGGAGGGAGGGATGGAGGGCGGGAGGGA
GGGGGAGGGTTAG
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Coding sequence (CDS) from alignment at CM002468.1:121019..122081-

>rna6263 ID=rna6263|Name=rna6263|organism=Nannochloropsis gaditana|type=CDS|length=2187bp|location=Sequence derived from alignment at CM002468.1:121019..122081- (Nannochloropsis gaditana)
GTCGCGGGGGAGGGAGGGATGGAGGGCGGGAGGGAGGGGGAGGGTTAGGG
GGTCACCCGAGGGGCGGCGGGCGGCTACCCTCTCTACAGCCTGAACCTCC
CTTCCTCGCCTTCCTCCCCCCCTTCCTCCCTCCTTCCCCCTTTCCTCCCC
CCCCGGGCCTCCTCTCCCCGCCCACCGGCCCCAGCGGCCCCGCTTCTCGC
CTCCACCACCCGTCCCCCTCACCGGACGCCCGAGAAGACCCCCTGTCGTT
TCCATGCCCAGCCCGGCGGATGTGCCTCGGGGCATCAGTGCAAATTCCTC
CACCAAATCGAGCGGGACCAGGCAGGGGGAAGGAAGGGAGGGAGGGCGAG
GGAAGGCGTGGAAGGACCGGGACGACGCGGGCATGTGGCCTTGACCAAGA
CTCAAGCCTCTTTCTCTTCCCCCAACCTGACCCTCCTACCGCTCTTGCCG
TCCCCGCATCCCTCGGTAACGCCTTACCCTCGCCCCCCATTGCGTCAATC
CCACCATTTTCAACCGGCAGGGAATAGGGGCAACCGTGCTCCGCGCTCTA
TGGAGGAGACAACACGGTTTCACGAGGAACGCCTGCCAGAGTCTCCCCGG
CGGCAAGCACGTGATGGGGGCCGGCTACAATTACCGCACCAACAGCCGCC
ACAGGAGCAAGGACTTGATCAACATCCACAAGTCGCGACACAGCAGCCAG
AGTACGGGGATGGGCTCCATGCTTTTTTGGTCGCGGGGGAGGGAGGGATG
GAGGGCGGGAGGGAGGGGGAGGGTTAGGGGGTCACCCGAGGGGCGGCGGG
CGGCTACCCTCTCTACAGCCTGAACCTCCCTTCCTCGCCTTCCTCCCCCC
CTTCCTCCCTCCTTCCCCCTTTCCTCCCCCCCCGGGCCTCCTCTCCCCGC
CCACCGGCCCCAGCGGCCCCGCTTCTCGCCTCCACCACCCGTCCCCCTCA
CCGGACGCCCGAGAAGACCCCCTGTCGTTTCCATGCCCAGCCCGGCGGAT
GTGCCTCGGGGCATCAGTGCAAATTCCTCCACCAAATCGAGCGGGACCAG
GCAGGGGGAAGGAAGGGAGGGAGGGCGAGGGAAGGCGTGGAAGGACCGGG
ACGACGCGGGCATGTGGCCTTGACCAAGACTCAAGCCTCTTTCTCTTCCC
CCAACCTGACCCTCCTACCGCTCTTGCCGTCCCCGCATCCCTCGGTAACG
CCTTACCCTCGCCCCCCATTGCGTCAATCCCACCATTTTCAACCGGCAGG
GAATAGGGGCAACCGTGCTCCGCGCTCTATGGAGGAGACAACACGGTTTC
ACGAGGAACGCCTGCCAGAGTCTCCCCGGCGGCAAGCACGTGATGGGGGC
CGGCTACAATTACCGCACCAACAGCCGCCACAGGAGCAAGGACTTGATCA
ACATCCACAAGTCGCGACACAGCAGCCAGAGTACGGGGATGGGCTCCATG
CTTTTTTGGTCGCGGGGGAGGGAGGGATGGAGGGCGGGAGGGAGGGGGAG
GGTTAGGGGGTCACCCGAGGGGCGGCGGGCGGCTACCCTCTCTACAGCCT
GAACCTCCCTTCCTCGCCTTCCTCCCCCCCTTCCTCCCTCCTTCCCCCTT
TCCTCCCCCCCCGGGCCTCCTCTCCCCGCCCACCGGCCCCAGCGGCCCCG
CTTCTCGCCTCCACCACCCGTCCCCCTCACCGGACGCCCGAGAAGACCCC
CTGTCGTTTCCATGCCCAGCCCGGCGGATGTGCCTCGGGGCATCAGTGCA
AATTCCTCCACCAAATCGAGCGGGACCAGGCAGGGGGAAGGAAGGGAGGG
AGGGCGAGGGAAGGCGTGGAAGGACCGGGACGACGCGGGCATGTGGCCTT
GACCAAGACTCAAGCCTCTTTCTCTTCCCCCAACCTGACCCTCCTACCGC
TCTTGCCGTCCCCGCATCCCTCGGTAACGCCTTACCCTCGCCCCCCATTG
CGTCAATCCCACCATTTTCAACCGGCAGGGAATAGGGGCAACCGTGCTCC
GCGCTCTATGGAGGAGACAACACGGTTTCACGAGGAACGCCTGCCAGAGT
CTCCCCGGCGGCAAGCACGTGATGGGGGCCGGCTACAATTACCGCACCAA
CAGCCGCCACAGGAGCAAGGACTTGATCAACATCCACAAGTCGCGACACA
GCAGCCAGAGTACGGGGATGGGCTCCATGCTTTTTTG
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Synonyms
Publications