EWM24424.1, cds6248 (CDS) Nannochloropsis gaditana

Overview
NameEWM24424.1
Unique Namecds6248
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:121902..122081 -
Alignment locationCM002468.1:121257..121757 -
Alignment locationCM002468.1:121019..121066 -

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Properties
Property NameValue
Protein idEWM24424.1
ProductZinc finger, CCCH-type
Orig transcript idgnl|cribi|Naga_101168g1.7369.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:121902..122081 -
CM002468.1supercontigCM002468.1:121257..121757 -
CM002468.1supercontigCM002468.1:121019..121066 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0046872metal ion binding
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
Homology
[Close]
BLAST of EWM24424.1 vs. NCBI_GenBank
Match: gi|585105855|gb|EWM24424.1| (Zinc finger, CCCH-type [Nannochloropsis gaditana])

HSP 1 Score: 471.085 bits (1211), Expect = 1.077e-167
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 0 
Query:    1 MEETTRFHEERLPESPRRQARDGGRLQLPHQQPPQEQGLDQHPQVATQQPEYGDGLHAFLGVTRGAAGGYPLYSLNLPSSPSSPPSSLLPPFLPPRASSPRPPAPAAPLLASTTRPPHRTPEKTPCRFHAQPGGCASGHQCKFLHQIERDQAGGRKGGRAREGVEGPGRRGHVALTKTQASFSSPNLTLLPLLPSPHPSVTPYPRPPLRQSHHFQPAGNRGNRAPRSVAGEGGMEGGREGEG 242
            MEETTRFHEERLPESPRRQARDGGRLQLPHQQPPQEQGLDQHPQVATQQPEYGDGLHAFLGVTRGAAGGYPLYSLNLPSSPSSPPSSLLPPFLPPRASSPRPPAPAAPLLASTTRPPHRTPEKTPCRFHAQPGGCASGHQCKFLHQIERDQAGGRKGGRAREGVEGPGRRGHVALTKTQASFSSPNLTLLPLLPSPHPSVTPYPRPPLRQSHHFQPAGNRGNRAPRSVAGEGGMEGGREGEG
Sbjct:    1 MEETTRFHEERLPESPRRQARDGGRLQLPHQQPPQEQGLDQHPQVATQQPEYGDGLHAFLGVTRGAAGGYPLYSLNLPSSPSSPPSSLLPPFLPPRASSPRPPAPAAPLLASTTRPPHRTPEKTPCRFHAQPGGCASGHQCKFLHQIERDQAGGRKGGRAREGVEGPGRRGHVALTKTQASFSSPNLTLLPLLPSPHPSVTPYPRPPLRQSHHFQPAGNRGNRAPRSVAGEGGMEGGREGEG 242
The following BLAST results are available for this feature:
BLAST of EWM24424.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585105855|gb|EWM24424.1|1.077e-167100.00Zinc finger, CCCH-type [Nannochloropsis gaditana][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6263rna6263Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications