rna6256, rna6256 (mRNA) Nannochloropsis gaditana

Overview
Namerna6256
Unique Namerna6256
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length631
Alignment locationCM002468.1:108259..108899 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102788g1.2647.mrna
Orig protein idgnl|cribi|Naga_102788g1.2647
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:108259..108899 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102788g1gene6049Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6256rna6256-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24432.1cds6241Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6256 ID=rna6256|Name=rna6256|organism=Nannochloropsis gaditana|type=mRNA|length=631bp
GGGATGATACGATGAGAAAGTGTGCACGCCCATGCACACTGCCTCGCGCA
TGACTAGCACACAAGGCGCTGCAACACTTGAGCATTTGCCCCCGTACACA
CACCCATGACCCCCTTACAAGACAGAAACACGGAAGAAGGCGGTCCCAAT
ATTCAGTATCATGCCGCGTGGTACGCTGAAGAGTAATTCCTACAGCAGCA
GCACAGGGAGACAACCTCTCCTTCCTCAAGCCAGTACCTTGGATGGCCCT
GCCCCCGGGAAAAACGGTGGCGGTGCCGGCGAAAACACGCCGTACGGCGG
CCGGCCGAACGTCATCCCTCCTGCAACCTGGGAGGAAAGGGAGAAGAGAA
AGACAGAAGCGGAAGGGACGAGGCGGACAGGGACAGGGCACCACAGGGCC
ATGCGAAAGCTGCCGCTGGTGGGTTTGGGAGTCTTTGACCTGCTGTTCCT
GGCGGCCACGGTGCTGGGAGTGTATCAGGGGCATTTGAAAGATTTCTGGG
CAGATCACTACACGAACTACAGCTTCGAGCACGCCCTCCTGGACGCCATG
GGGGTCCCGGCTGCTACGACTGGGCAGACGGGGAGGGCGGGGGGGAAGGC
GGCTTCTATACGACGCGGGGGGCGGAGGTGA
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protein sequence of rna6256

>rna6256-protein ID=rna6256-protein|Name=rna6256|organism=Nannochloropsis gaditana|type=polypeptide|length=171bp
SLLLPPSLPPYSTSHTSHCFLNLLSLVHIHVLPPSLYPSRHPSFLFPPSC
PLRLVLSSTTPVPPPSSSLDVPPLSPSLPPSLPPSLPPSLPPSLPRSHTS
SSTSSPPWVSAWPSASSSSFTSSSGNSPSSSSPPSSSTASSRFGSPSGGR
NSGRPPTRRTTRWGGREGGSE
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mRNA from alignment at CM002468.1:108259..108899+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6256 ID=rna6256|Name=rna6256|organism=Nannochloropsis gaditana|type=mRNA|length=641bp|location=Sequence derived from alignment at CM002468.1:108259..108899+ (Nannochloropsis gaditana)
TCcctactcctccctccctccctccctccctattcCACAAGCCATACCTC
CCACTGCTTCCTCAATCTGCTCTCCCTCGTGCATAttcatgtcctccctc
cctccctctatccctcccgtcacccttctttcctcttccccccttcctgt
cctctacgcctcgtcctttcttccaccacgcccgtcccacctccctcctc
ttcgcttgacgtcccccccctctctccctccctccctccctccctccctc
cctccctccctccctccctccctccctccctccctaggTCAcatacctct
tcctctacctcctccccgccctgggtGAGTGCCTGGCCGTCTGCATCATC
TTCCTCGTTCACTTCCAGCAGTGGgaactctccctcctcctcttctcctc
cctcctcctctacggCTTCGTCACGATTCGGATCACCCTCTGGCGGAAGA
AATTCCGGGAGGCCACCAACCAGAAGGACAacgaggtggggagggaggga
gggagggagtgagtgagtgagtgagtgagtgagtgagtgagtgagtgagt
gagtggGTGAGTGAGTGAatgagtgagggagggcctCATCGGCTTTCGTG
GATGGCCTGCATGACGTGCCGTCGAatcggcgtgggagggg
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Coding sequence (CDS) from alignment at CM002468.1:108259..108899+

>rna6256 ID=rna6256|Name=rna6256|organism=Nannochloropsis gaditana|type=CDS|length=516bp|location=Sequence derived from alignment at CM002468.1:108259..108899+ (Nannochloropsis gaditana)
TCcctactcctccctccctccctccctccctattcCACAAGCCATACCTC
CCACTGCTTCCTCAATCTGCTCTCCCTCGTGCATAttcatgtcctccctc
cctccctctatccctcccgtcacccttctttcctcttccccccttcctgt
cctctacgcctcgtcctttcttccaccacgcccgtcccacctccctcctc
ttcgcttgacgtcccccccctctctccctccctccctccctccctccctc
cctccctccctccctccctccctccctccctccctaggTCAcatacctct
tcctctacctcctccccgccctgggtGAGTGCCTGGCCGTCTGCATCATC
TTCCTCGTTCACTTCCAGCAGTGGgaactctccctcctcctcttctcctc
cctcctcctctacggCTTCGTCACGATTCGGATCACCCTCTGGCGGAAGA
AATTCCGGGAGGCCACCAACCAGAAGGACAacgaggtggggagggaggga
gggagggagtgagtga
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Synonyms
Publications