EWM24432.1, cds6241 (CDS) Nannochloropsis gaditana

Overview
NameEWM24432.1
Unique Namecds6241
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:108259..108774 +

Link to JBrowse

Properties
Property NameValue
Start range108259
Start range.
Protein idEWM24432.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_102788g1.2647.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:108259..108774 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
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BLAST of EWM24432.1 vs. NCBI_GenBank
Match: gi|585105869|gb|EWM24432.1| (hypothetical protein Naga_102788g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 295.819 bits (756), Expect = 1.117e-100
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0 
Query:    1 SLLLPPSLPPYSTSHTSHCFLNLLSLVHIHVLPPSLYPSRHPSFLFPPSCPLRLVLSSTTPVPPPSSSLDVPPLSPSLPPSLPPSLPPSLPPSLPRSHTSSSTSSPPWVSAWPSASSSSFTSSSGNSPSSSSPPSSSTASSRFGSPSGGRNSGRPPTRRTTRWGGREGGSE 171
            SLLLPPSLPPYSTSHTSHCFLNLLSLVHIHVLPPSLYPSRHPSFLFPPSCPLRLVLSSTTPVPPPSSSLDVPPLSPSLPPSLPPSLPPSLPPSLPRSHTSSSTSSPPWVSAWPSASSSSFTSSSGNSPSSSSPPSSSTASSRFGSPSGGRNSGRPPTRRTTRWGGREGGSE
Sbjct:    1 SLLLPPSLPPYSTSHTSHCFLNLLSLVHIHVLPPSLYPSRHPSFLFPPSCPLRLVLSSTTPVPPPSSSLDVPPLSPSLPPSLPPSLPPSLPPSLPRSHTSSSTSSPPWVSAWPSASSSSFTSSSGNSPSSSSPPSSSTASSRFGSPSGGRNSGRPPTRRTTRWGGREGGSE 171
The following BLAST results are available for this feature:
BLAST of EWM24432.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585105869|gb|EWM24432.1|1.117e-100100.00hypothetical protein Naga_102788g1, partial [Nanno... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6256rna6256Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications