EWM24438.1, cds6234 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM24438.1 vs. NCBI_GenBank
Match: gi|585105882|gb|EWM24438.1| (hypothetical protein Naga_101643g1 [Nannochloropsis gaditana]) HSP 1 Score: 331.643 bits (849), Expect = 4.033e-115 Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0
Query: 1 MHDFKRLAPPPLIFSAWLLLSRRDSQASAFPFRCPQERKRGEDTMSSLSLLGKRAILLARRPVPSGCRSFTRSAVRAGGGAGHNPGPPMQPFKRTAMPEGPLYEEHELIWDDRVAAEMCIDFDASFVPTREVRIGKKRGGGCLCHGHAGRRGGRERGQVTLET 163
MHDFKRLAPPPLIFSAWLLLSRRDSQASAFPFRCPQERKRGEDTMSSLSLLGKRAILLARRPVPSGCRSFTRSAVRAGGGAGHNPGPPMQPFKRTAMPEGPLYEEHELIWDDRVAAEMCIDFDASFVPTREVRIGKKRGGGCLCHGHAGRRGGRERGQVTLET
Sbjct: 1 MHDFKRLAPPPLIFSAWLLLSRRDSQASAFPFRCPQERKRGEDTMSSLSLLGKRAILLARRPVPSGCRSFTRSAVRAGGGAGHNPGPPMQPFKRTAMPEGPLYEEHELIWDDRVAAEMCIDFDASFVPTREVRIGKKRGGGCLCHGHAGRRGGRERGQVTLET 163
BLAST of EWM24438.1 vs. NCBI_GenBank
Match: gi|553189920|ref|XP_005855099.1| (hypothetical protein NGA_0399000 [Nannochloropsis gaditana CCMP526] >gi|422293955|gb|EKU21255.1| hypothetical protein NGA_0399000 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 178.718 bits (452), Expect = 7.879e-55 Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = 0
Query: 45 MSSLSLLGKRAILLARRPVPSGCRSFTRSAVRAGGGAGHNPGPPMQPFKRTAMPEGPLYEEHELIWDDRVAAEMCIDFDASFVPTREV 132
MSSLSLLGKRAILLARRPVPSGCRSFTRSAVRAGGGAGHNPGPPMQPFKRTAMPEGPLYEEHELIWDDRVAAEMCIDFDASFVPTRE
Sbjct: 1 MSSLSLLGKRAILLARRPVPSGCRSFTRSAVRAGGGAGHNPGPPMQPFKRTAMPEGPLYEEHELIWDDRVAAEMCIDFDASFVPTREA 88
BLAST of EWM24438.1 vs. NCBI_GenBank
Match: gi|675199725|ref|XP_008908747.1| (hypothetical protein PPTG_14011 [Phytophthora parasitica INRA-310] >gi|568091421|gb|ETN06245.1| hypothetical protein PPTG_14011 [Phytophthora parasitica INRA-310] >gi|970662623|gb|KUF99994.1| actin [Phytophthora nicotianae]) HSP 1 Score: 58.151 bits (139), Expect = 7.795e-8 Identity = 29/61 (47.54%), Postives = 35/61 (57.38%), Query Frame = 0
Query: 72 RSAVRAGGGAGHNPGPPMQPFKRTAMPEGPLYEEHELIWDDRVAAEMCIDFDASFVPTREV 132
R A+ GG H P PP PF R P PL+EE EL+W+D VA E IDFDA +P +
Sbjct: 20 RQALATRGGHAHRPPPP--PFARIKTPAQPLHEEAELVWNDGVAPETLIDFDAPHIPKYQA 78
BLAST of EWM24438.1 vs. NCBI_GenBank
Match: gi|566019553|gb|ETI42464.1| (hypothetical protein F443_12417 [Phytophthora parasitica P1569] >gi|567956865|gb|ETK82480.1| hypothetical protein L915_12144 [Phytophthora parasitica] >gi|567985525|gb|ETL35865.1| hypothetical protein L916_12069 [Phytophthora parasitica] >gi|568014932|gb|ETL89109.1| hypothetical protein L917_11904 [Phytophthora parasitica] >gi|568045203|gb|ETM42359.1| hypothetical protein L914_11976 [Phytophthora parasitica] >gi|570323135|gb|ETO71083.1| hypothetical protein F444_12519 [Phytophthora parasitica P1976] >gi|570946920|gb|ETP12177.1| hypothetical protein F441_12404 [Phytophthora parasitica CJ01A1] >gi|570979352|gb|ETP40304.1| hypothetical protein F442_12340 [Phytophthora parasitica P10297]) HSP 1 Score: 58.151 bits (139), Expect = 8.129e-8 Identity = 29/60 (48.33%), Postives = 35/60 (58.33%), Query Frame = 0
Query: 72 RSAVRAGGGAGHNPGPPMQPFKRTAMPEGPLYEEHELIWDDRVAAEMCIDFDASFVPTRE 131
R A+ GG H P PP PF R P PL+EE EL+W+D VA E IDFDA +P +
Sbjct: 20 RQALATRGGHAHRPPPP--PFARIKTPAQPLHEEAELVWNDGVAPETLIDFDAPHIPKYQ 77
BLAST of EWM24438.1 vs. NCBI_GenBank
Match: gi|1214712279|gb|OWZ23230.1| (hypothetical protein PHMEG_0001892 [Phytophthora megakarya]) HSP 1 Score: 56.9954 bits (136), Expect = 2.000e-7 Identity = 28/61 (45.90%), Postives = 35/61 (57.38%), Query Frame = 0
Query: 72 RSAVRAGGGAGHNPGPPMQPFKRTAMPEGPLYEEHELIWDDRVAAEMCIDFDASFVPTREV 132
R A+ GG H P PP PF R P PL+EE EL+W+D V+ E IDFDA +P +
Sbjct: 21 RQALATRGGHAHRPPPP--PFARIQAPAQPLHEEAELVWNDGVSPETLIDFDAPHIPKYQA 79
BLAST of EWM24438.1 vs. NCBI_GenBank
Match: gi|301091657|ref|XP_002896008.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262095669|gb|EEY53721.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 56.6102 bits (135), Expect = 2.828e-7 Identity = 28/60 (46.67%), Postives = 34/60 (56.67%), Query Frame = 0
Query: 72 RSAVRAGGGAGHNPGPPMQPFKRTAMPEGPLYEEHELIWDDRVAAEMCIDFDASFVPTRE 131
R A+ G H P PP PF R P PL+EE EL+W+D VA E IDFDA +P +
Sbjct: 20 RQALATRGNHAHRPPPP--PFARIKTPAQPLHEEAELVWNDGVAPETLIDFDAPHIPKYQ 77
BLAST of EWM24438.1 vs. NCBI_GenBank
Match: gi|970649635|gb|KUF88850.1| (Mitochondrial inner membrane protease subunit 1 [Phytophthora nicotianae]) HSP 1 Score: 57.7658 bits (138), Expect = 5.380e-7 Identity = 32/81 (39.51%), Postives = 43/81 (53.09%), Query Frame = 0
Query: 56 ILLARRPVPSGCR-----SFTRSAVRAGGGAGHNPGPPMQPFKRTAMPEGPLYEEHELIWDDRVAAEMCIDFDASFVPTRE 131
I+++ R + R + R A+ GG H P PP PF R P PL+EE EL+W+D VA E IDFDA +P +
Sbjct: 139 IIMSSRTLSHALRGGLSANVRRQALATRGGHAHRPPPP--PFARIKTPAQPLHEEAELVWNDGVAPETLIDFDAPHIPKYQ 217 The following BLAST results are available for this feature:
BLAST of EWM24438.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 7
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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