rna6249, rna6249 (mRNA) Nannochloropsis gaditana

Overview
Namerna6249
Unique Namerna6249
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length345
Alignment locationCM002468.1:87785..88697 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101643g1.2597.mrna
Orig protein idgnl|cribi|Naga_101643g1.2597
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:87785..88697 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101643g1gene6042Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6249rna6249-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24438.1cds6234Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6249 ID=rna6249|Name=rna6249|organism=Nannochloropsis gaditana|type=mRNA|length=345bp
ATGGAATGGGAGGGAGGTCGTTCGGCCGCGGGGGGCGGAGCGGGAAGGGT
GGTCGGGGGGGAGGAGGGGGATAAAAAGACGCCAAAGAATTGGTTGCAGG
TGAAAAGTTTGTGTTCACGGTGTTCCTCGACACAGCTGTACTTGTTGCGT
TGGTGTGGTTGTTACGAAGCACCGTCGTCGGGATCCATCGTGTCTTGTCA
ACCAACCTTGGAGAGCACTTACTGCTCGAGACGTGCCCAGGTGGAGAACT
CGCCTTTCACTATTTTAATTAAAATATCTCATCGCGTCCTCTCTGATTTT
CTAGGAGAGTTTTTAATGCCGGCGAGCTGCTGTCATTCTTTTTAA
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protein sequence of rna6249

>rna6249-protein ID=rna6249-protein|Name=rna6249|organism=Nannochloropsis gaditana|type=polypeptide|length=163bp
MHDFKRLAPPPLIFSAWLLLSRRDSQASAFPFRCPQERKRGEDTMSSLSL
LGKRAILLARRPVPSGCRSFTRSAVRAGGGAGHNPGPPMQPFKRTAMPEG
PLYEEHELIWDDRVAAEMCIDFDASFVPTREVRIGKKRGGGCLCHGHAGR
RGGRERGQVTLET
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mRNA from alignment at CM002468.1:87785..88697-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6249 ID=rna6249|Name=rna6249|organism=Nannochloropsis gaditana|type=mRNA|length=913bp|location=Sequence derived from alignment at CM002468.1:87785..88697- (Nannochloropsis gaditana)
ACGCCCTAGCACACCGCCTAAACCCTCGTTTCCCCGACTAAACACAAATA
CGGGCCTCGTCCACCGCGGTTCCCCACCCCTCTCCTGTCATTTTCCACGT
ATTTGAGGCCCCATACGACCATGAAGACCTGGTTTGGATGAAACATGCAT
GACTTCAAACGTCTTGCCCCCCCCCCCCTTATCTTCTCAGCGTGGCTCCT
TCTAAGCCGCCGTGATTCACAAGCTTCCGCATTTCCTTTCCGTTGCCCAC
AGGAGAGGAAGAGAGGGGAAGACACCATGTCCTCTCTTTCCCTCCTTGGC
AAGAGGGCGATTCTTCTAGCCCGGCGGCCCGTACCGTCTGGGTGCAGGTC
GTTCACACGCTCGGCTGTTCGTGCAGGTCAGTAATGCCAGGATGAGAAGG
GGTTTGAGAGGGAAGAGCCGCCCGGCGGCCGTGACCCCGACGCATGACAG
GGTGGACAAACCGTGGCGCGGTGTACTATGCTGGCATCGATGGGTAACCG
GCATCACGGGAGAATTTGGGGAGAAGTAGTGACGTGGATAAGGGAGGGGA
GGGGGAGGGATACCCAGTTCAGGACGAGTGCCTCCCAGAAATCCATCGCC
TTCTCCCTCCCACCTTTGCGTCCTTTCCTCTTGCACGCCAGGCGGCGGGG
CTGGCCACAACCCTGGTCCCCCCATGCAGCCATTCAAAAGGACAGCAATG
CCCGAAGGGCCCCTGTACGAGGAGCACGAATTGATTTGGGACGACCGTGT
GGCTGCGGAAATGTGCATTGATTTCGACGCCAGCTTTGTGCCCACGAGGG
AGGTAAGGATTGGGAAAAAGAGAGGGGGCGGTTGTCTTTGCCATGGGCAT
GCGGGACGGAGGGGAGGGAGGGAGAGGGGCCAGGTCACTCTTGAGACTTA
ACGGTCCTCCCTC
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Coding sequence (CDS) from alignment at CM002468.1:87785..88697-

>rna6249 ID=rna6249|Name=rna6249|organism=Nannochloropsis gaditana|type=CDS|length=984bp|location=Sequence derived from alignment at CM002468.1:87785..88697- (Nannochloropsis gaditana)
GCGGCGGGGCTGGCCACAACCCTGGTCCCCCCATGCAGCCATTCAAAAGG
ACAGCAATGCCCGAAGGGCCCCTGTACGAGGAGCACGAATTGATTTGGGA
CGACCGTGTGGCTGCGGAAATGTGCATTGATTTCGACGCCAGCTTTGTGC
CCACGAGGGAGGTAAGGATTGGGAAAAAGAGAGGGGGCGGTTGTCTTTGC
CATGGGCATGCGGGACGGAGGGGAGGGAGGGAGAGGGGCCAGGTCACTCT
TGAGACTTAAATGCATGACTTCAAACGTCTTGCCCCCCCCCCCCTTATCT
TCTCAGCGTGGCTCCTTCTAAGCCGCCGTGATTCACAAGCTTCCGCATTT
CCTTTCCGTTGCCCACAGGAGAGGAAGAGAGGGGAAGACACCATGTCCTC
TCTTTCCCTCCTTGGCAAGAGGGCGATTCTTCTAGCCCGGCGGCCCGTAC
CGTCTGGGTGCAGGTCGTTCACACGCTCGGCTGTTCGTGCAGGCGGCGGG
GCTGGCCACAACCCTGGTCCCCCCATGCAGCCATTCAAAAGGACAGCAAT
GCCCGAAGGGCCCCTGTACGAGGAGCACGAATTGATTTGGGACGACCGTG
TGGCTGCGGAAATGTGCATTGATTTCGACGCCAGCTTTGTGCCCACGAGG
GAGGTAAGGATTGGGAAAAAGAGAGGGGGCGGTTGTCTTTGCCATGGGCA
TGCGGGACGGAGGGGAGGGAGGGAGAGGGGCCAGGTCACTCTTGAGACTT
AAATGCATGACTTCAAACGTCTTGCCCCCCCCCCCCTTATCTTCTCAGCG
TGGCTCCTTCTAAGCCGCCGTGATTCACAAGCTTCCGCATTTCCTTTCCG
TTGCCCACAGGAGAGGAAGAGAGGGGAAGACACCATGTCCTCTCTTTCCC
TCCTTGGCAAGAGGGCGATTCTTCTAGCCCGGCGGCCCGTACCGTCTGGG
TGCAGGTCGTTCACACGCTCGGCTGTTCGTGCAG
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Synonyms
Publications