EWM24438.1, cds6234 (CDS) Nannochloropsis gaditana

Overview
NameEWM24438.1
Unique Namecds6234
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:88322..88553 -
Alignment locationCM002468.1:87797..88056 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24438.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101643g1.2597.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:88322..88553 -
CM002468.1supercontigCM002468.1:87797..88056 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM24438.1 vs. NCBI_GenBank
Match: gi|585105882|gb|EWM24438.1| (hypothetical protein Naga_101643g1 [Nannochloropsis gaditana])

HSP 1 Score: 331.643 bits (849), Expect = 4.033e-115
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0
Query:    1 MHDFKRLAPPPLIFSAWLLLSRRDSQASAFPFRCPQERKRGEDTMSSLSLLGKRAILLARRPVPSGCRSFTRSAVRAGGGAGHNPGPPMQPFKRTAMPEGPLYEEHELIWDDRVAAEMCIDFDASFVPTREVRIGKKRGGGCLCHGHAGRRGGRERGQVTLET 163
            MHDFKRLAPPPLIFSAWLLLSRRDSQASAFPFRCPQERKRGEDTMSSLSLLGKRAILLARRPVPSGCRSFTRSAVRAGGGAGHNPGPPMQPFKRTAMPEGPLYEEHELIWDDRVAAEMCIDFDASFVPTREVRIGKKRGGGCLCHGHAGRRGGRERGQVTLET
Sbjct:    1 MHDFKRLAPPPLIFSAWLLLSRRDSQASAFPFRCPQERKRGEDTMSSLSLLGKRAILLARRPVPSGCRSFTRSAVRAGGGAGHNPGPPMQPFKRTAMPEGPLYEEHELIWDDRVAAEMCIDFDASFVPTREVRIGKKRGGGCLCHGHAGRRGGRERGQVTLET 163          
BLAST of EWM24438.1 vs. NCBI_GenBank
Match: gi|553189920|ref|XP_005855099.1| (hypothetical protein NGA_0399000 [Nannochloropsis gaditana CCMP526] >gi|422293955|gb|EKU21255.1| hypothetical protein NGA_0399000 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 178.718 bits (452), Expect = 7.879e-55
Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = 0
Query:   45 MSSLSLLGKRAILLARRPVPSGCRSFTRSAVRAGGGAGHNPGPPMQPFKRTAMPEGPLYEEHELIWDDRVAAEMCIDFDASFVPTREV 132
            MSSLSLLGKRAILLARRPVPSGCRSFTRSAVRAGGGAGHNPGPPMQPFKRTAMPEGPLYEEHELIWDDRVAAEMCIDFDASFVPTRE 
Sbjct:    1 MSSLSLLGKRAILLARRPVPSGCRSFTRSAVRAGGGAGHNPGPPMQPFKRTAMPEGPLYEEHELIWDDRVAAEMCIDFDASFVPTREA 88          
BLAST of EWM24438.1 vs. NCBI_GenBank
Match: gi|675199725|ref|XP_008908747.1| (hypothetical protein PPTG_14011 [Phytophthora parasitica INRA-310] >gi|568091421|gb|ETN06245.1| hypothetical protein PPTG_14011 [Phytophthora parasitica INRA-310] >gi|970662623|gb|KUF99994.1| actin [Phytophthora nicotianae])

HSP 1 Score: 58.151 bits (139), Expect = 7.795e-8
Identity = 29/61 (47.54%), Postives = 35/61 (57.38%), Query Frame = 0
Query:   72 RSAVRAGGGAGHNPGPPMQPFKRTAMPEGPLYEEHELIWDDRVAAEMCIDFDASFVPTREV 132
            R A+   GG  H P PP  PF R   P  PL+EE EL+W+D VA E  IDFDA  +P  + 
Sbjct:   20 RQALATRGGHAHRPPPP--PFARIKTPAQPLHEEAELVWNDGVAPETLIDFDAPHIPKYQA 78          
BLAST of EWM24438.1 vs. NCBI_GenBank
Match: gi|566019553|gb|ETI42464.1| (hypothetical protein F443_12417 [Phytophthora parasitica P1569] >gi|567956865|gb|ETK82480.1| hypothetical protein L915_12144 [Phytophthora parasitica] >gi|567985525|gb|ETL35865.1| hypothetical protein L916_12069 [Phytophthora parasitica] >gi|568014932|gb|ETL89109.1| hypothetical protein L917_11904 [Phytophthora parasitica] >gi|568045203|gb|ETM42359.1| hypothetical protein L914_11976 [Phytophthora parasitica] >gi|570323135|gb|ETO71083.1| hypothetical protein F444_12519 [Phytophthora parasitica P1976] >gi|570946920|gb|ETP12177.1| hypothetical protein F441_12404 [Phytophthora parasitica CJ01A1] >gi|570979352|gb|ETP40304.1| hypothetical protein F442_12340 [Phytophthora parasitica P10297])

HSP 1 Score: 58.151 bits (139), Expect = 8.129e-8
Identity = 29/60 (48.33%), Postives = 35/60 (58.33%), Query Frame = 0
Query:   72 RSAVRAGGGAGHNPGPPMQPFKRTAMPEGPLYEEHELIWDDRVAAEMCIDFDASFVPTRE 131
            R A+   GG  H P PP  PF R   P  PL+EE EL+W+D VA E  IDFDA  +P  +
Sbjct:   20 RQALATRGGHAHRPPPP--PFARIKTPAQPLHEEAELVWNDGVAPETLIDFDAPHIPKYQ 77          
BLAST of EWM24438.1 vs. NCBI_GenBank
Match: gi|1214712279|gb|OWZ23230.1| (hypothetical protein PHMEG_0001892 [Phytophthora megakarya])

HSP 1 Score: 56.9954 bits (136), Expect = 2.000e-7
Identity = 28/61 (45.90%), Postives = 35/61 (57.38%), Query Frame = 0
Query:   72 RSAVRAGGGAGHNPGPPMQPFKRTAMPEGPLYEEHELIWDDRVAAEMCIDFDASFVPTREV 132
            R A+   GG  H P PP  PF R   P  PL+EE EL+W+D V+ E  IDFDA  +P  + 
Sbjct:   21 RQALATRGGHAHRPPPP--PFARIQAPAQPLHEEAELVWNDGVSPETLIDFDAPHIPKYQA 79          
BLAST of EWM24438.1 vs. NCBI_GenBank
Match: gi|301091657|ref|XP_002896008.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262095669|gb|EEY53721.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 56.6102 bits (135), Expect = 2.828e-7
Identity = 28/60 (46.67%), Postives = 34/60 (56.67%), Query Frame = 0
Query:   72 RSAVRAGGGAGHNPGPPMQPFKRTAMPEGPLYEEHELIWDDRVAAEMCIDFDASFVPTRE 131
            R A+   G   H P PP  PF R   P  PL+EE EL+W+D VA E  IDFDA  +P  +
Sbjct:   20 RQALATRGNHAHRPPPP--PFARIKTPAQPLHEEAELVWNDGVAPETLIDFDAPHIPKYQ 77          
BLAST of EWM24438.1 vs. NCBI_GenBank
Match: gi|970649635|gb|KUF88850.1| (Mitochondrial inner membrane protease subunit 1 [Phytophthora nicotianae])

HSP 1 Score: 57.7658 bits (138), Expect = 5.380e-7
Identity = 32/81 (39.51%), Postives = 43/81 (53.09%), Query Frame = 0
Query:   56 ILLARRPVPSGCR-----SFTRSAVRAGGGAGHNPGPPMQPFKRTAMPEGPLYEEHELIWDDRVAAEMCIDFDASFVPTRE 131
            I+++ R +    R     +  R A+   GG  H P PP  PF R   P  PL+EE EL+W+D VA E  IDFDA  +P  +
Sbjct:  139 IIMSSRTLSHALRGGLSANVRRQALATRGGHAHRPPPP--PFARIKTPAQPLHEEAELVWNDGVAPETLIDFDAPHIPKYQ 217          
The following BLAST results are available for this feature:
BLAST of EWM24438.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 7
Match NameE-valueIdentityDescription
gi|585105882|gb|EWM24438.1|4.033e-115100.00hypothetical protein Naga_101643g1 [Nannochloropsi... [more]
gi|553189920|ref|XP_005855099.1|7.879e-5598.86hypothetical protein NGA_0399000 [Nannochloropsis ... [more]
gi|675199725|ref|XP_008908747.1|7.795e-847.54hypothetical protein PPTG_14011 [Phytophthora para... [more]
gi|566019553|gb|ETI42464.1|8.129e-848.33hypothetical protein F443_12417 [Phytophthora para... [more]
gi|1214712279|gb|OWZ23230.1|2.000e-745.90hypothetical protein PHMEG_0001892 [Phytophthora m... [more]
gi|301091657|ref|XP_002896008.1|2.828e-746.67conserved hypothetical protein [Phytophthora infes... [more]
gi|970649635|gb|KUF88850.1|5.380e-739.51Mitochondrial inner membrane protease subunit 1 [P... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6249rna6249Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications