rna6247, rna6247 (mRNA) Nannochloropsis gaditana

Overview
Namerna6247
Unique Namerna6247
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1311
Alignment locationCM002468.1:84089..84478 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100602g2.8854.mrna
Orig protein idgnl|cribi|Naga_100602g2.8854
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:84089..84478 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100602g2gene6039Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6247rna6247-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24441.1cds6232Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6247 ID=rna6247|Name=rna6247|organism=Nannochloropsis gaditana|type=mRNA|length=1311bp
ATGCGTCCCTGCCTTTCAAAGGGTGCAGCAATCAGAGGTCTGTGTCGACC
AGCGCATGTCACTGGAGGGGTCTTTACGCAGAGAACGGAGGATGGCATGC
ACCTAGCTTTGGCCGACGGCCCCGGTCGAAGCCAGCAATATCGAACCTTC
ATCTTTCCCACACATGCAATAGCGACTGCCTCGGCGAACTTCACGGCCGC
AGCCTCTCACTCGGTCTCCTCCTCCTCCCTCCCACCGTCCTCGTCCACGG
CTTCCGCGTCCCTCTCTCATGTGGACCGGCAGGGACAGCCCACCATGGTC
GACGTGGGCGGAAAGACCATAAGTTCACGCGAGGCCAAAGCCCGCTGCCG
CGTCGTCTTCCCGAGACAAACCATGGGTAGCGTCCTTCAGTACGAGGGGC
GGAAGGAGCTGATGAGCAGTAAGGGCCCTGTTTTTAGCACAGCCATAGTG
GCGGGGGTGATGGGGGCGAAAAAGACGTCGGAGCTGATCCCGTTCTGTCA
CCCCCTCGCCCTCGACGACTGCCACCTGCATGTCCGCTTCGACGAGGACC
TGAACCGGCCGAACGAGGTCTTGATCGACTGCACCGTCCGCGTCCAAGGG
CGGACGGGCGTGGAGATGGAGGCCCTGACTGGCGCCTCCATGGCCGCCCT
CTGCATCTACGACATGTGCAAAGCCACCAGCCACGACATCCTCATCAAGG
ACCTACAACTTCTCTCCAAAAGCGGCGGAAAACGCGACGTGAAACGACGT
GAGGTCGTGACCACCATCCCCTTCCCCCCTTCCTCCCTCCCTGCTTCGAG
GAAGAGGGAGAAGAGGAGAAAGAGAGACGGGAGGACAAGGAGCGGAGAGA
CAGGGAGGCTTGTATCATGGACTACACAATTTGAGGGAAGGATGGAGGGC
GAGGGGGAGGCAGGGGGGGAAGGAGGATCACCGCCGCACCCTACAGGACC
TAGCGGGCTCGGAAGAAATTTGACCCTCGATGGAGGGATAGGAGGGAATG
ACGGTGGGTGTTGCAAAGCAAAAATGGGAAGGGATAGGGGCATCGGAATA
ACTGAGCGTTGGAGACCATGTGTGAGGATTCCATGCATGGCGAGGGTCTG
GGGACTACAGACAGACTTGTTGGGCTACCGTGTAGGAGGCTCGGAAAGTA
AGGAAGCTGGTGCGTGGTGCCTGAAGCAGGTGAATACACGGAGAAAGGAG
GGAAGAGAATGGCTGGCACACTCGTTGAGGAGCAAGATGATGGCGAACAC
CTCCAGGCTGCATGTGCGGAAGATTCCTAGACAAGAAAAGGGTTCACAGG
GGCGATATTGA
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protein sequence of rna6247

>rna6247-protein ID=rna6247-protein|Name=rna6247|organism=Nannochloropsis gaditana|type=polypeptide|length=98bp
MWFATRKDQLRRHNDSKTSGKTKDRLHAFIGVNCNDHPSPVRTNRVKQNS
VSNSGLNSTVFWQRLDVFKAIRPFDTSILKRCKQTGENDILVIEICVI
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mRNA from alignment at CM002468.1:84089..84478+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6247 ID=rna6247|Name=rna6247|organism=Nannochloropsis gaditana|type=mRNA|length=390bp|location=Sequence derived from alignment at CM002468.1:84089..84478+ (Nannochloropsis gaditana)
ATGTGGTTTGCGACACGGAAAGATCAATGTCTCCCCTATGATCGATGCAA
AAGAGACAGATTAGGGGAAAGAAATAGTCCTTTGGCGCCGCATTTTCTTT
AATGATGCGGATTTGGGGAAGTGAGGCGTCATAACGATTCGAAAACGAGC
GGAAAGACAAAAGACCGGTTACATGCTTTCATAGGTGTGAATTGTAATGA
TCACCCCTCGCCTGTACGAACAAATAGGGTCAAACAGAACTCAGTATCAA
ATTCTGGATTGAATTCGACCGTCTTTTGGCAGCGATTGGACGTGTTTAAA
GCTATTCGCCCATTTGATACCTCAATCCTTAAACGCTGTAAACAGACAGG
AGAAAACGATATCCTTGTCATAGAAATCTGCGTGATTTAA
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Coding sequence (CDS) from alignment at CM002468.1:84089..84478+

>rna6247 ID=rna6247|Name=rna6247|organism=Nannochloropsis gaditana|type=CDS|length=594bp|location=Sequence derived from alignment at CM002468.1:84089..84478+ (Nannochloropsis gaditana)
ATGTGGTTTGCGACACGGAAAGATCAATTGAGGCGTCATAACGATTCGAA
AACGAGCGGAAAGACAAAAGACCGGTTACATGCTTTCATAGGTGTGAATT
GTAATGATCACCCCTCGCCTGTACGAACAAATAGGGTCAAACAGAACTCA
GTATCAAATTCTGGATTGAATTCGACCGTCTTTTGGCAGCGATTGGACGT
GTTTAAAGCTATTCGCCCATTTGATACCTCAATCCTTAAACGCTGTAAAC
AGACAGGAGAAAACGATATCCTTGTCATAGAAATCTGCGTGATTTAAATG
TGGTTTGCGACACGGAAAGATCAATTGAGGCGTCATAACGATTCGAAAAC
GAGCGGAAAGACAAAAGACCGGTTACATGCTTTCATAGGTGTGAATTGTA
ATGATCACCCCTCGCCTGTACGAACAAATAGGGTCAAACAGAACTCAGTA
TCAAATTCTGGATTGAATTCGACCGTCTTTTGGCAGCGATTGGACGTGTT
TAAAGCTATTCGCCCATTTGATACCTCAATCCTTAAACGCTGTAAACAGA
CAGGAGAAAACGATATCCTTGTCATAGAAATCTGCGTGATTTAA
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Synonyms
Publications