rna6239, rna6239 (mRNA) Nannochloropsis gaditana

Overview
Namerna6239
Unique Namerna6239
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2269
Alignment locationCM002468.1:58826..59521 +

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Properties
Property NameValue
Productthif family
Orig transcript idgnl|cribi|Naga_100486g1.7027.mrna
Orig protein idgnl|cribi|Naga_100486g1.7027
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:58826..59521 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100486g1gene6030Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6239rna6239-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24451.1cds6224Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6239 ID=rna6239|Name=rna6239|organism=Nannochloropsis gaditana|type=mRNA|length=2269bp
GGATTGTGCGCTGCATGCTGATTCAGTATCTCTCATAATGGAGCCACAAG
GACAGCATCCACAGCACGAGGGACCTCATCAGATTCCGTCCCCACTGGAC
GGCCTCCGTCGTAGATGGCAAAAGGCACGTCGAGGCCTACGCGAGGCCCC
GGCTCCAGAGGAGGACACAGGAACAAGACGACAACGCCAAGAAGGTCAGC
TTGCTGCCGATGCACAGGCCCAACATCACGTTCATGGCATTTGCTCCCAG
CAAGTGTTGCATCAGAAGGCCAATTCAATCGGAAAAACAGCAGAGGGTGC
AGGCGCGTTGCTACTTCAAGACAGCAGCCGTAAAGAATCTGTCGGTTCAG
ACACAGCAGGCATTACTCAGTACGGAGGGCGGGGGCGGGAAATAAGAACG
CATCGACGGCTTAGCACGGAAGGGGAGGTAGACGTGGCGGAAGACGACTT
ATGCTGCTTTGATTGGGGCCTGCTGATCGAGCCGGTGACCATGCTGTGCG
GCCATACTTTTTGCCGGCATTGCGTGGGGATTATACTCGAGGACTCACAG
ATCAAGACGCAGGGAGGGACCCCTCATACACCTGGGGCGATGAAATGTCC
CTTGTGCTGCCGTTCCCTCCCTGCTGTCTTGCCCCAGCCAAACGTCCGGC
TACGCAACGAACTACGTGCAAAGTACCCGGATCTATACGCATACAGAATG
GAGACAGTAGGCGCTGCTTTCGTGGAGAAGGAGAGCAAGATGCGGAGACA
GGGACAGAAGAGAGGCACCATAATGACGCCAGAGGACCTGGAAGGCTTGC
TAGCGGCGCATCAGCGTCGCGTCACGGCGGCAAGGCGGGAAGGTCTCGCG
GGGGGGCAGCGCGCAGGGCCGAGGGGGGGAGGAATTCTACGATTCCTGCG
CCGGCGCCAGATAGACGCCCTGGCCGTGGGGGAGGAGGGAGAGGAGGAAG
AAGAGGAAGAGGAAGGCGGGAGGATGGCAGGGATAGAGGAAGAGGAGGAG
GAAGGGATGGAGGTGGGGGAGGGAGACCCCGTGTTCGAAGCGGTGGAGTT
GTTCCAATCCGAGCTCGTGCGAATATGGCGGTCCCGACGTTACTTGTGTT
GGATCCTGAGCTTGTTTGTCTTGATGGTGGGTTTGCACCCTTTGCGCCTC
GCACCCCTGCCAGGGAAAGCCGCCCAGGTGGAAGCTATCTTGCGTGTGGA
CACGTGGACGGAGTGGTTGTCTTTGGAACGTTGCTTGGCTGTGGGAGACA
AGGCGGGTGCCGTCGACGAAGACAGCAGGCGCTTGTCTTTCTGCCGGCTG
ATACGGCAAGAGTCTGTTTCCCCAAGACCCTCCTCAGTGCCGGCGAAGGG
CAAAGAAAGTCGGATGGACGACGACGTTTCCCCCCCCCACCCTCGACGCG
GGCACGGCGCTCCACCCTTCCCCTCCTCTTCCTCCCCGGCGTCCCGTCTG
GAGGATACCACTTTCCCTGGGAGCGAGCTTTTGGCCACCATTTACATGTA
CCCCTCGTGGGGTTGGATAGAACGCGTCTCGAGAGGGGTGGAGGGGACGG
TGATTGACCTTCTCCAAGTGCTGCAGACGCCGACGCCCGCCTCCATTCTG
GGAGCGTTCCCAGGTTTCGGCATGGGGGTGTACGCCCTGGCACACCACGG
CTGGTCCGCTCCTTTCCGGGAGCTGGTGGCATTCTTGGCCATCGAAGGGG
AGATACGTCAGTTTATGGCCGTCTGGACCGTCCTGACGATACCGACCCGC
ATTCCGCGCAACCCCTTAGACATTCCCCCCCTGGGAGACATGCCGGCGTA
CGCCTGGACGGTTTTGTCCCTGACCTTGGCACAGGGTGCCTACCTGCTTG
CCTGCGAGATGTTTGCGACGCTCCTGGATGTGGTTGCCCTCTCCCCCATG
CTCCTTGCCTTGACTCAGGGCACCTGTTGGAGAAGCGAAGCCTCTTTGAT
CGCCACCGTCCTGGTCCGCTTCTGGTTGATGTTGCGGGAAGATGTGCGGG
CCCTGGAAGCCTGCTTGGGGCGTTACACGGCCTTGGAGGCGACTATTTTG
CGGCTCTTCATCCTATTGAGTGTCTTTACGGCTCCCTTGTGGGCACCTCG
GCCCATGTTCAACGGATCGGATTTGGTCTCGGCACTGACGAGTGCAGGGG
GAGAGGTGGTGACAGAGATCATGGTTTCAAGTAAAAAGGTAGACACATGC
TGCATTTGCTTACAAATGGCTAGAAAGCCTGGATGCCCAAGACCAATGAC
TGGAGCACTGACACATTAA
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protein sequence of rna6239

>rna6239-protein ID=rna6239-protein|Name=rna6239|organism=Nannochloropsis gaditana|type=polypeptide|length=112bp
MSRSSSVLLFMAGAATASVLFLALHHQRRRQRHQTAPSISQSSHSVSSLP
PSLEHELFARVVSFFGEESFPPIQKAFVVVVGLGGVGSHAAHMLVRSGVQ
RIRVIDFDQSPV
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mRNA from alignment at CM002468.1:58826..59521+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6239 ID=rna6239|Name=rna6239|organism=Nannochloropsis gaditana|type=mRNA|length=696bp|location=Sequence derived from alignment at CM002468.1:58826..59521+ (Nannochloropsis gaditana)
CCTCATACACACTGATGCACAACAATTTTTAAATCAGTCCGTAAGTCACA
AAGATGTCTCGCAGTTCTTCAGTACTTTTATTCATGGCGGGCGCTGCGAc
agcctccgtccttttcctcgccctccaccatcagcGACGGCGGCAACGCC
ATCAAACCGCCCCTTCCATATCTCAATCTTCACATTCCGTatcctccttg
ccgccctcGCTAGAACATGAGCTGTTCGCCCGAGTGGTCTCTTTTTTCGG
GGAGGAAtcgtttcctcccatccAAAAAGCCTTCGTCGTCGTggtgggcc
tgggaggggtgggTTCTCATGCGGCACATATGCTTGTCAGGAGTGGCGTC
CAAAGAATCCGAGTGATAGATTTTGATCAGGTAGGAGACACCTGTGAGAA
GGAAAGCCTCGGTATGGACGTGATTGGCATGCCAGGAAGGGGGATTGAGA
CCCATCATCATAGTCCGCATATATAATGCATATTTATATCCACATGAAGG
tcacgctttcctccctgaaTCGCCACGCAGTCGCCGGTCTGAAAGATGTG
GGTCTATCGAAAGCCGAGGTCCTGAAAACGCGCCTGATGGAACTGGGATT
GCCTCGCCTACAAATCGATGCTTGTCGAGCCCTTTTCAAGATGGACACTG
CCTCCGTATTACTGGGCCCGTGgaaagggacaggagggggagaggg
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Coding sequence (CDS) from alignment at CM002468.1:58826..59521+

>rna6239 ID=rna6239|Name=rna6239|organism=Nannochloropsis gaditana|type=CDS|length=678bp|location=Sequence derived from alignment at CM002468.1:58826..59521+ (Nannochloropsis gaditana)
ATGTCTCGCAGTTCTTCAGTACTTTTATTCATGGCGGGCGCTGCGAcagc
ctccgtccttttcctcgccctccaccatcagcGACGGCGGCAACGCCATC
AAACCGCCCCTTCCATATCTCAATCTTCACATTCCGTatcctccttgccg
ccctcGCTAGAACATGAGCTGTTCGCCCGAGTGGTCTCTTTTTTCGGGGA
GGAAtcgtttcctcccatccAAAAAGCCTTCGTCGTCGTggtgggcctgg
gaggggtgggTTCTCATGCGGCACATATGCTTGTCAGGAGTGGCGTCCAA
AGAATCCGAGTGATAGATTTTGATCAGTCGCCGGTCTGAATGTCTCGCAG
TTCTTCAGTACTTTTATTCATGGCGGGCGCTGCGAcagcctccgtccttt
tcctcgccctccaccatcagcGACGGCGGCAACGCCATCAAACCGCCCCT
TCCATATCTCAATCTTCACATTCCGTatcctccttgccgccctcGCTAGA
ACATGAGCTGTTCGCCCGAGTGGTCTCTTTTTTCGGGGAGGAAtcgtttc
ctcccatccAAAAAGCCTTCGTCGTCGTggtgggcctgggaggggtgggT
TCTCATGCGGCACATATGCTTGTCAGGAGTGGCGTCCAAAGAATCCGAGT
GATAGATTTTGATCAGTCGCCGGTCTGA
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Synonyms
Publications