EWM24451.1, cds6224 (CDS) Nannochloropsis gaditana

Overview
NameEWM24451.1
Unique Namecds6224
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:58879..59205 +
Alignment locationCM002468.1:59356..59367 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24451.1
Productthif family
Orig transcript idgnl|cribi|Naga_100486g1.7027.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:58879..59205 +
CM002468.1supercontigCM002468.1:59356..59367 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0008641ubiquitin-like modifier activating enzyme activity
Vocabulary: INTERPRO
TermDefinition
IPR009036Molybdenum_cofac_synth_MoeB
IPR016040NAD(P)-bd_dom
IPR000594ThiF_NAD_FAD-bd
Homology
BLAST of EWM24451.1 vs. NCBI_GenBank
Match: gi|585105906|gb|EWM24451.1| (thif family [Nannochloropsis gaditana])

HSP 1 Score: 217.624 bits (553), Expect = 1.521e-71
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0
Query:    1 MSRSSSVLLFMAGAATASVLFLALHHQRRRQRHQTAPSISQSSHSVSSLPPSLEHELFARVVSFFGEESFPPIQKAFVVVVGLGGVGSHAAHMLVRSGVQRIRVIDFDQSPV 112
            MSRSSSVLLFMAGAATASVLFLALHHQRRRQRHQTAPSISQSSHSVSSLPPSLEHELFARVVSFFGEESFPPIQKAFVVVVGLGGVGSHAAHMLVRSGVQRIRVIDFDQSPV
Sbjct:    1 MSRSSSVLLFMAGAATASVLFLALHHQRRRQRHQTAPSISQSSHSVSSLPPSLEHELFARVVSFFGEESFPPIQKAFVVVVGLGGVGSHAAHMLVRSGVQRIRVIDFDQSPV 112          
BLAST of EWM24451.1 vs. NCBI_GenBank
Match: gi|667482529|gb|AIG55840.1| (secreted protein [Achlya hypogyna] >gi|1173945775|gb|OQR94368.1| ubiquitin-activating enzyme (E1) [Achlya hypogyna])

HSP 1 Score: 98.2117 bits (243), Expect = 6.240e-22
Identity = 49/92 (53.26%), Postives = 62/92 (67.39%), Query Frame = 0
Query:   25 HHQRRRQRHQTAPSISQSSHSVSSLPPS-------LEHELFARVVSFFGEESFPPIQKAFVVVVGLGGVGSHAAHMLVRSGVQRIRVIDFDQ 109
             H  RR     APS+++S      LPPS       L +E F+R+ SFFGE+ F  IQ AFV+V+GLGGVGSHAAHML RSGV+++R+IDFD 
Sbjct:   21 QHFARRNSTAQAPSVARS------LPPSATEGSQDLNNEQFSRICSFFGEDGFAKIQDAFVIVIGLGGVGSHAAHMLARSGVKKLRLIDFDN 106          
BLAST of EWM24451.1 vs. NCBI_GenBank
Match: gi|673037464|ref|XP_008872693.1| (hypothetical protein H310_08634 [Aphanomyces invadans] >gi|574471489|gb|ETV98496.1| hypothetical protein H310_08634 [Aphanomyces invadans])

HSP 1 Score: 96.6709 bits (239), Expect = 2.939e-21
Identity = 52/103 (50.49%), Postives = 65/103 (63.11%), Query Frame = 0
Query:    9 LFMAGAATASV--LFLALHHQRRRQRHQTAPSISQSSHSVSSLPPSLEHELFARVVSFFGEESFPPIQKAFVVVVGLGGVGSHAAHMLVRSGVQRIRVIDFDQ 109
            +F  G  TA+V    LA    RR  +    PS  Q   + S+   +L  E F+R+ SFFGEE F  IQ AFV+V+GLGGVGSHAAHML RSGV+ +R+IDFD 
Sbjct:   15 VFTLGVVTAAVGQYLLAQQQPRRAAKPLATPSAPQPVAATSA-DAALSTEQFSRICSFFGEEGFEKIQNAFVIVIGLGGVGSHAAHMLARSGVRHLRLIDFDN 116          
BLAST of EWM24451.1 vs. NCBI_GenBank
Match: gi|698799010|ref|XP_009832534.1| (hypothetical protein H257_08382 [Aphanomyces astaci] >gi|574112705|gb|ETV78197.1| hypothetical protein H257_08382 [Aphanomyces astaci])

HSP 1 Score: 92.8189 bits (229), Expect = 7.606e-20
Identity = 52/102 (50.98%), Postives = 66/102 (64.71%), Query Frame = 0
Query:    9 LFMAGAATASV-LFLALHHQRRRQRHQTAPSISQSSHSVSSLPPSLEHELFARVVSFFGEESFPPIQKAFVVVVGLGGVGSHAAHMLVRSGVQRIRVIDFDQ 109
            +F  G ATA+V  +L      + QR   A  I+  S S   +  +L  E F+R+ SFFGEE F  IQ AFV+V+GLGGVGSHAAHML RSGV+ +R+IDFD 
Sbjct:   15 VFSLGVATAAVGQYLLTQQPSKPQRQAQALPIAAPSSSPVEVD-ALSAEQFSRICSFFGEEGFDKIQHAFVIVIGLGGVGSHAAHMLARSGVRHLRLIDFDN 115          
BLAST of EWM24451.1 vs. NCBI_GenBank
Match: gi|669141712|ref|XP_008606418.1| (hypothetical protein SDRG_02599 [Saprolegnia diclina VS20] >gi|530741702|gb|EQC39944.1| hypothetical protein SDRG_02599 [Saprolegnia diclina VS20])

HSP 1 Score: 90.8929 bits (224), Expect = 3.432e-19
Identity = 47/88 (53.41%), Postives = 59/88 (67.05%), Query Frame = 0
Query:   31 QRHQTAPSISQSSHSVSSLP---PS------LEHELFARVVSFFGEESFPPIQKAFVVVVGLGGVGSHAAHMLVRSGVQRIRVIDFDQ 109
            QR   +PS   +  S   LP   PS      L +E F+R+ SFFG+E F  IQ AFV+V+GLGGVGSHAAHML RSGV+++R+IDFD 
Sbjct:   21 QRFLQSPSPPATKPSARDLPATAPSSSSGQVLTNEQFSRINSFFGDEGFAKIQDAFVIVIGLGGVGSHAAHMLARSGVKKLRLIDFDN 108          
BLAST of EWM24451.1 vs. NCBI_GenBank
Match: gi|813180575|ref|XP_012206096.1| (hypothetical protein SPRG_09952 [Saprolegnia parasitica CBS 223.65] >gi|641528946|gb|KDO23144.1| hypothetical protein SPRG_09952 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 90.1225 bits (222), Expect = 5.899e-19
Identity = 52/109 (47.71%), Postives = 69/109 (63.30%), Query Frame = 0
Query:    7 VLLFMAGAATASVLFLALHHQRRRQRHQTAPSISQSSHSV------SSLPPSLEHELFARVVSFFGEESFPPIQKAFVVVVGLGGVGSHAAHMLVRSGVQRIRVIDFDQ 109
            V LF  GA +A      +  QR  Q   ++P+I  S+  +      SS    L +E F+R+ SFFG+E F  IQ AFV+V+GLGGVGSHAAHML RSGV+++R+IDFD 
Sbjct:    7 VALFALGAISA------IAAQRFLQ-SSSSPAIKPSARDLPAAATSSSSGQDLTNEQFSRINSFFGDEGFAKIQDAFVIVIGLGGVGSHAAHMLARSGVKKLRLIDFDN 108          
BLAST of EWM24451.1 vs. NCBI_GenBank
Match: gi|1198308463|gb|OUM65156.1| (hypothetical protein PIROE2DRAFT_60204 [Piromyces sp. E2])

HSP 1 Score: 75.8702 bits (185), Expect = 8.512e-15
Identity = 47/106 (44.34%), Postives = 72/106 (67.92%), Query Frame = 0
Query:   11 MAGAATASVLFLALHHQRRRQ----RHQTAPSISQSSHSVSSLPPSLEHELFARVVSFFGEESFPPIQKAFVVVVGLGGVGSHAAHMLVRSGVQRIRVIDFDQSPV 112
            ++ A TAS +FL  +  +R++    + + + +I+ +S + S L      E+ +R  SFFGEE    I+K+FV+VVG+GGVGSHAAHML+RSGV ++R+IDFD+  V
Sbjct:   14 ISSACTASAIFLIQYLLKRKEIQKLKREFSNAIAFNSTNKSELNEDYIREVLSRNYSFFGEEKMEKIRKSFVIVVGVGGVGSHAAHMLMRSGVGKLRIIDFDEVSV 119          
BLAST of EWM24451.1 vs. NCBI_GenBank
Match: gi|302854273|ref|XP_002958646.1| (hypothetical protein VOLCADRAFT_84545 [Volvox carteri f. nagariensis] >gi|300256035|gb|EFJ40312.1| hypothetical protein VOLCADRAFT_84545 [Volvox carteri f. nagariensis])

HSP 1 Score: 77.411 bits (189), Expect = 2.670e-14
Identity = 36/54 (66.67%), Postives = 43/54 (79.63%), Query Frame = 0
Query:   56 ELFARVVSFFGEESFPPIQKAFVVVVGLGGVGSHAAHMLVRSGVQRIRVIDFDQ 109
            E   R V FFGEE    I K+FV++VGLGGVGSHAAH+L+RSGV R+R+IDFDQ
Sbjct:   67 EQLTRNVQFFGEEGQLEIAKSFVIIVGLGGVGSHAAHLLLRSGVGRMRLIDFDQ 120          
BLAST of EWM24451.1 vs. NCBI_GenBank
Match: gi|219129764|ref|XP_002185051.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403546|gb|EEC43498.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 77.411 bits (189), Expect = 2.792e-14
Identity = 39/109 (35.78%), Postives = 65/109 (59.63%), Query Frame = 0
Query:    3 RSSSVLLFMAGAATASVLFLALHHQRRRQRHQT--APSISQSSHSVSSLPPSLEHELFARVVSFFGEESFPPIQKAFVVVVGLGGVGSHAAHMLVRSGVQRIRVIDFDQ 109
            RS   +  +AG+ +  +    L   +  +  QT  +P+++Q+  + + LP  +  E  +R + +FGE+    +++  + VVGLGGVGSH AHML R+GV  +R+IDFDQ
Sbjct:    5 RSDLWIGLVAGSLSTVIATWCLQRYQSTKNPQTLYSPTLNQTPTASTLLPDDIRDEQLSRHLLYFGEDGMDRLKRCKICVVGLGGVGSHTAHMLARAGVGYLRLIDFDQ 113          
BLAST of EWM24451.1 vs. NCBI_GenBank
Match: gi|1183359800|gb|ORX87200.1| (hypothetical protein BCR32DRAFT_215477 [Anaeromyces robustus])

HSP 1 Score: 75.485 bits (184), Expect = 1.031e-13
Identity = 51/117 (43.59%), Postives = 76/117 (64.96%), Query Frame = 0
Query:    2 SRSSSVLL--FMAGAATASVLFLALHHQRRRQ----RHQTAPSISQSSHSVSSLPPSLEHELFARVVSFFGEESFPPIQKAFVVVVGLGGVGSHAAHMLVRSGVQRIRVIDFDQSPV 112
            S +SS++    ++ A TAS +FL  +  +R++    + + + +I+    + S L      E+ +R  SFFGEE    I+K+FV+VVG+GGVGSHAAHML+RSGV RIR+IDFD+  V
Sbjct:    3 SNTSSLITASLISSACTASTIFLIQYILKRKEIQKLKREFSNAIASKPTNKSELNEDYIREVLSRNYSFFGEEKMQKIRKSFVIVVGVGGVGSHAAHMLMRSGVGRIRIIDFDEVTV 119          
The following BLAST results are available for this feature:
BLAST of EWM24451.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105906|gb|EWM24451.1|1.521e-71100.00thif family [Nannochloropsis gaditana][more]
gi|667482529|gb|AIG55840.1|6.240e-2253.26secreted protein [Achlya hypogyna] >gi|1173945775|... [more]
gi|673037464|ref|XP_008872693.1|2.939e-2150.49hypothetical protein H310_08634 [Aphanomyces invad... [more]
gi|698799010|ref|XP_009832534.1|7.606e-2050.98hypothetical protein H257_08382 [Aphanomyces astac... [more]
gi|669141712|ref|XP_008606418.1|3.432e-1953.41hypothetical protein SDRG_02599 [Saprolegnia dicli... [more]
gi|813180575|ref|XP_012206096.1|5.899e-1947.71hypothetical protein SPRG_09952 [Saprolegnia paras... [more]
gi|1198308463|gb|OUM65156.1|8.512e-1544.34hypothetical protein PIROE2DRAFT_60204 [Piromyces ... [more]
gi|302854273|ref|XP_002958646.1|2.670e-1466.67hypothetical protein VOLCADRAFT_84545 [Volvox cart... [more]
gi|219129764|ref|XP_002185051.1|2.792e-1435.78predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1183359800|gb|ORX87200.1|1.031e-1343.59hypothetical protein BCR32DRAFT_215477 [Anaeromyce... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6239rna6239Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications