EWM24451.1, cds6224 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24451.1 vs. NCBI_GenBank
Match: gi|585105906|gb|EWM24451.1| (thif family [Nannochloropsis gaditana]) HSP 1 Score: 217.624 bits (553), Expect = 1.521e-71 Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0 Query: 1 MSRSSSVLLFMAGAATASVLFLALHHQRRRQRHQTAPSISQSSHSVSSLPPSLEHELFARVVSFFGEESFPPIQKAFVVVVGLGGVGSHAAHMLVRSGVQRIRVIDFDQSPV 112 MSRSSSVLLFMAGAATASVLFLALHHQRRRQRHQTAPSISQSSHSVSSLPPSLEHELFARVVSFFGEESFPPIQKAFVVVVGLGGVGSHAAHMLVRSGVQRIRVIDFDQSPV Sbjct: 1 MSRSSSVLLFMAGAATASVLFLALHHQRRRQRHQTAPSISQSSHSVSSLPPSLEHELFARVVSFFGEESFPPIQKAFVVVVGLGGVGSHAAHMLVRSGVQRIRVIDFDQSPV 112
BLAST of EWM24451.1 vs. NCBI_GenBank
Match: gi|667482529|gb|AIG55840.1| (secreted protein [Achlya hypogyna] >gi|1173945775|gb|OQR94368.1| ubiquitin-activating enzyme (E1) [Achlya hypogyna]) HSP 1 Score: 98.2117 bits (243), Expect = 6.240e-22 Identity = 49/92 (53.26%), Postives = 62/92 (67.39%), Query Frame = 0 Query: 25 HHQRRRQRHQTAPSISQSSHSVSSLPPS-------LEHELFARVVSFFGEESFPPIQKAFVVVVGLGGVGSHAAHMLVRSGVQRIRVIDFDQ 109 H RR APS+++S LPPS L +E F+R+ SFFGE+ F IQ AFV+V+GLGGVGSHAAHML RSGV+++R+IDFD Sbjct: 21 QHFARRNSTAQAPSVARS------LPPSATEGSQDLNNEQFSRICSFFGEDGFAKIQDAFVIVIGLGGVGSHAAHMLARSGVKKLRLIDFDN 106
BLAST of EWM24451.1 vs. NCBI_GenBank
Match: gi|673037464|ref|XP_008872693.1| (hypothetical protein H310_08634 [Aphanomyces invadans] >gi|574471489|gb|ETV98496.1| hypothetical protein H310_08634 [Aphanomyces invadans]) HSP 1 Score: 96.6709 bits (239), Expect = 2.939e-21 Identity = 52/103 (50.49%), Postives = 65/103 (63.11%), Query Frame = 0 Query: 9 LFMAGAATASV--LFLALHHQRRRQRHQTAPSISQSSHSVSSLPPSLEHELFARVVSFFGEESFPPIQKAFVVVVGLGGVGSHAAHMLVRSGVQRIRVIDFDQ 109 +F G TA+V LA RR + PS Q + S+ +L E F+R+ SFFGEE F IQ AFV+V+GLGGVGSHAAHML RSGV+ +R+IDFD Sbjct: 15 VFTLGVVTAAVGQYLLAQQQPRRAAKPLATPSAPQPVAATSA-DAALSTEQFSRICSFFGEEGFEKIQNAFVIVIGLGGVGSHAAHMLARSGVRHLRLIDFDN 116
BLAST of EWM24451.1 vs. NCBI_GenBank
Match: gi|698799010|ref|XP_009832534.1| (hypothetical protein H257_08382 [Aphanomyces astaci] >gi|574112705|gb|ETV78197.1| hypothetical protein H257_08382 [Aphanomyces astaci]) HSP 1 Score: 92.8189 bits (229), Expect = 7.606e-20 Identity = 52/102 (50.98%), Postives = 66/102 (64.71%), Query Frame = 0 Query: 9 LFMAGAATASV-LFLALHHQRRRQRHQTAPSISQSSHSVSSLPPSLEHELFARVVSFFGEESFPPIQKAFVVVVGLGGVGSHAAHMLVRSGVQRIRVIDFDQ 109 +F G ATA+V +L + QR A I+ S S + +L E F+R+ SFFGEE F IQ AFV+V+GLGGVGSHAAHML RSGV+ +R+IDFD Sbjct: 15 VFSLGVATAAVGQYLLTQQPSKPQRQAQALPIAAPSSSPVEVD-ALSAEQFSRICSFFGEEGFDKIQHAFVIVIGLGGVGSHAAHMLARSGVRHLRLIDFDN 115
BLAST of EWM24451.1 vs. NCBI_GenBank
Match: gi|669141712|ref|XP_008606418.1| (hypothetical protein SDRG_02599 [Saprolegnia diclina VS20] >gi|530741702|gb|EQC39944.1| hypothetical protein SDRG_02599 [Saprolegnia diclina VS20]) HSP 1 Score: 90.8929 bits (224), Expect = 3.432e-19 Identity = 47/88 (53.41%), Postives = 59/88 (67.05%), Query Frame = 0 Query: 31 QRHQTAPSISQSSHSVSSLP---PS------LEHELFARVVSFFGEESFPPIQKAFVVVVGLGGVGSHAAHMLVRSGVQRIRVIDFDQ 109 QR +PS + S LP PS L +E F+R+ SFFG+E F IQ AFV+V+GLGGVGSHAAHML RSGV+++R+IDFD Sbjct: 21 QRFLQSPSPPATKPSARDLPATAPSSSSGQVLTNEQFSRINSFFGDEGFAKIQDAFVIVIGLGGVGSHAAHMLARSGVKKLRLIDFDN 108
BLAST of EWM24451.1 vs. NCBI_GenBank
Match: gi|813180575|ref|XP_012206096.1| (hypothetical protein SPRG_09952 [Saprolegnia parasitica CBS 223.65] >gi|641528946|gb|KDO23144.1| hypothetical protein SPRG_09952 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 90.1225 bits (222), Expect = 5.899e-19 Identity = 52/109 (47.71%), Postives = 69/109 (63.30%), Query Frame = 0 Query: 7 VLLFMAGAATASVLFLALHHQRRRQRHQTAPSISQSSHSV------SSLPPSLEHELFARVVSFFGEESFPPIQKAFVVVVGLGGVGSHAAHMLVRSGVQRIRVIDFDQ 109 V LF GA +A + QR Q ++P+I S+ + SS L +E F+R+ SFFG+E F IQ AFV+V+GLGGVGSHAAHML RSGV+++R+IDFD Sbjct: 7 VALFALGAISA------IAAQRFLQ-SSSSPAIKPSARDLPAAATSSSSGQDLTNEQFSRINSFFGDEGFAKIQDAFVIVIGLGGVGSHAAHMLARSGVKKLRLIDFDN 108
BLAST of EWM24451.1 vs. NCBI_GenBank
Match: gi|1198308463|gb|OUM65156.1| (hypothetical protein PIROE2DRAFT_60204 [Piromyces sp. E2]) HSP 1 Score: 75.8702 bits (185), Expect = 8.512e-15 Identity = 47/106 (44.34%), Postives = 72/106 (67.92%), Query Frame = 0 Query: 11 MAGAATASVLFLALHHQRRRQ----RHQTAPSISQSSHSVSSLPPSLEHELFARVVSFFGEESFPPIQKAFVVVVGLGGVGSHAAHMLVRSGVQRIRVIDFDQSPV 112 ++ A TAS +FL + +R++ + + + +I+ +S + S L E+ +R SFFGEE I+K+FV+VVG+GGVGSHAAHML+RSGV ++R+IDFD+ V Sbjct: 14 ISSACTASAIFLIQYLLKRKEIQKLKREFSNAIAFNSTNKSELNEDYIREVLSRNYSFFGEEKMEKIRKSFVIVVGVGGVGSHAAHMLMRSGVGKLRIIDFDEVSV 119
BLAST of EWM24451.1 vs. NCBI_GenBank
Match: gi|302854273|ref|XP_002958646.1| (hypothetical protein VOLCADRAFT_84545 [Volvox carteri f. nagariensis] >gi|300256035|gb|EFJ40312.1| hypothetical protein VOLCADRAFT_84545 [Volvox carteri f. nagariensis]) HSP 1 Score: 77.411 bits (189), Expect = 2.670e-14 Identity = 36/54 (66.67%), Postives = 43/54 (79.63%), Query Frame = 0 Query: 56 ELFARVVSFFGEESFPPIQKAFVVVVGLGGVGSHAAHMLVRSGVQRIRVIDFDQ 109 E R V FFGEE I K+FV++VGLGGVGSHAAH+L+RSGV R+R+IDFDQ Sbjct: 67 EQLTRNVQFFGEEGQLEIAKSFVIIVGLGGVGSHAAHLLLRSGVGRMRLIDFDQ 120
BLAST of EWM24451.1 vs. NCBI_GenBank
Match: gi|219129764|ref|XP_002185051.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403546|gb|EEC43498.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 77.411 bits (189), Expect = 2.792e-14 Identity = 39/109 (35.78%), Postives = 65/109 (59.63%), Query Frame = 0 Query: 3 RSSSVLLFMAGAATASVLFLALHHQRRRQRHQT--APSISQSSHSVSSLPPSLEHELFARVVSFFGEESFPPIQKAFVVVVGLGGVGSHAAHMLVRSGVQRIRVIDFDQ 109 RS + +AG+ + + L + + QT +P+++Q+ + + LP + E +R + +FGE+ +++ + VVGLGGVGSH AHML R+GV +R+IDFDQ Sbjct: 5 RSDLWIGLVAGSLSTVIATWCLQRYQSTKNPQTLYSPTLNQTPTASTLLPDDIRDEQLSRHLLYFGEDGMDRLKRCKICVVGLGGVGSHTAHMLARAGVGYLRLIDFDQ 113
BLAST of EWM24451.1 vs. NCBI_GenBank
Match: gi|1183359800|gb|ORX87200.1| (hypothetical protein BCR32DRAFT_215477 [Anaeromyces robustus]) HSP 1 Score: 75.485 bits (184), Expect = 1.031e-13 Identity = 51/117 (43.59%), Postives = 76/117 (64.96%), Query Frame = 0 Query: 2 SRSSSVLL--FMAGAATASVLFLALHHQRRRQ----RHQTAPSISQSSHSVSSLPPSLEHELFARVVSFFGEESFPPIQKAFVVVVGLGGVGSHAAHMLVRSGVQRIRVIDFDQSPV 112 S +SS++ ++ A TAS +FL + +R++ + + + +I+ + S L E+ +R SFFGEE I+K+FV+VVG+GGVGSHAAHML+RSGV RIR+IDFD+ V Sbjct: 3 SNTSSLITASLISSACTASTIFLIQYILKRKEIQKLKREFSNAIASKPTNKSELNEDYIREVLSRNYSFFGEEKMQKIRKSFVIVVGVGGVGSHAAHMLMRSGVGRIRIIDFDEVTV 119 The following BLAST results are available for this feature:
BLAST of EWM24451.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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