EWM24449.1, cds6220 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24449.1 vs. NCBI_GenBank
Match: gi|585105904|gb|EWM24449.1| (receptor mediated endocytosis protein, partial [Nannochloropsis gaditana]) HSP 1 Score: 235.728 bits (600), Expect = 1.508e-78 Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0
Query: 1 MSTQSDQGRDQATRRVIQGLKNIYKSTILPLEQMYMYDAFYSPALSDSEFDSKPMVMLVGQYSTGKTSFIRYLIGRDFPGQRIGPEPTTDRFVAVMDGPEERVIPGREGGREGDGK 116
MSTQSDQGRDQATRRVIQGLKNIYKSTILPLEQMYMYDAFYSPALSDSEFDSKPMVMLVGQYSTGKTSFIRYLIGRDFPGQRIGPEPTTDRFVAVMDGPEERVIPGREGGREGDGK
Sbjct: 1 MSTQSDQGRDQATRRVIQGLKNIYKSTILPLEQMYMYDAFYSPALSDSEFDSKPMVMLVGQYSTGKTSFIRYLIGRDFPGQRIGPEPTTDRFVAVMDGPEERVIPGREGGREGDGK 116
BLAST of EWM24449.1 vs. NCBI_GenBank
Match: gi|298713481|emb|CBJ27036.1| (RME1, RME-1/EHD family ATPase with a C-terminal EH domain [Ectocarpus siliculosus]) HSP 1 Score: 154.451 bits (389), Expect = 6.928e-42 Identity = 69/98 (70.41%), Postives = 85/98 (86.73%), Query Frame = 0
Query: 9 RDQATRRVIQGLKNIYKSTILPLEQMYMYDAFYSPALSDSEFDSKPMVMLVGQYSTGKTSFIRYLIGRDFPGQRIGPEPTTDRFVAVMDGPEERVIPG 106
+D+AT V++GLK +Y + + PLEQ YM+ F+SP L+DSEF+SKP V++ GQYSTGKTSFIRYL+GRDFPGQRIGPEPTTDRFVAVMDG +ERV+PG
Sbjct: 6 QDEATAAVVEGLKRLYHTKLKPLEQTYMFGWFHSPPLTDSEFESKPQVLMCGQYSTGKTSFIRYLLGRDFPGQRIGPEPTTDRFVAVMDGSDERVVPG 103
BLAST of EWM24449.1 vs. NCBI_GenBank
Match: gi|675379523|gb|KFM72425.1| (EH domain-containing protein 1, partial [Stegodyphus mimosarum]) HSP 1 Score: 139.813 bits (351), Expect = 6.651e-40 Identity = 66/106 (62.26%), Postives = 83/106 (78.30%), Query Frame = 0
Query: 8 GRDQATRR-------VIQGLKNIYKSTILPLEQMYMYDAFYSPALSDSEFDSKPMVMLVGQYSTGKTSFIRYLIGRDFPGQRIGPEPTTDRFVAVMDGPEERVIPG 106
RD++ RR V+ GL+ IYKS ILPLE+ Y++ F+SP L D +FD+KPM++LVGQYSTGKT+FIRYL+ +DFPG RIGPEPTTDRF+AVM G +E VIPG
Sbjct: 6 SRDESRRREPELYNTVVDGLRKIYKSKILPLEEYYLFHEFHSPPLDDPDFDAKPMILLVGQYSTGKTTFIRYLLEKDFPGIRIGPEPTTDRFIAVMYGTQETVIPG 111
BLAST of EWM24449.1 vs. NCBI_GenBank
Match: gi|444724482|gb|ELW65085.1| (EH domain-containing protein 1 [Tupaia chinensis]) HSP 1 Score: 138.272 bits (347), Expect = 1.535e-38 Identity = 60/96 (62.50%), Postives = 78/96 (81.25%), Query Frame = 0
Query: 11 QATRRVIQGLKNIYKSTILPLEQMYMYDAFYSPALSDSEFDSKPMVMLVGQYSTGKTSFIRYLIGRDFPGQRIGPEPTTDRFVAVMDGPEERVIPG 106
+ R+V +GL+ +Y +LPLE+ Y + F+SPAL D++FD+KPMV+LVGQYSTGKT+FIR+LI +DFPG RIGPEPTTD F+AVM GP E V+PG
Sbjct: 23 EGVRQVFEGLRQLYAQKLLPLEEHYRFHEFHSPALEDADFDNKPMVLLVGQYSTGKTTFIRHLIEQDFPGMRIGPEPTTDSFIAVMHGPTEGVVPG 118
BLAST of EWM24449.1 vs. NCBI_GenBank
Match: gi|1080057395|ref|XP_018570489.1| (PREDICTED: EH domain-containing protein 1-like [Anoplophora glabripennis]) HSP 1 Score: 144.436 bits (363), Expect = 2.046e-38 Identity = 64/98 (65.31%), Postives = 82/98 (83.67%), Query Frame = 0
Query: 9 RDQATRRVIQGLKNIYKSTILPLEQMYMYDAFYSPALSDSEFDSKPMVMLVGQYSTGKTSFIRYLIGRDFPGQRIGPEPTTDRFVAVMDGPEERVIPG 106
R Q VI+GLK+IYK+ +LPLEQ Y+++ F+SP L+D++FD+KPM++LVGQYSTGKT+FI+YL+ RDFPG RIGPEPTTDRF+AVM E VIPG
Sbjct: 18 RQQCYENVIEGLKSIYKNKMLPLEQHYLFNEFHSPPLNDADFDAKPMILLVGQYSTGKTTFIKYLLERDFPGMRIGPEPTTDRFIAVMFAENEGVIPG 115
BLAST of EWM24449.1 vs. NCBI_GenBank
Match: gi|934151862|gb|KPM02679.1| (EH domain-containing protein 1-like protein [Sarcoptes scabiei]) HSP 1 Score: 140.198 bits (352), Expect = 2.756e-38 Identity = 61/105 (58.10%), Postives = 81/105 (77.14%), Query Frame = 0
Query: 2 STQSDQGRDQATRRVIQGLKNIYKSTILPLEQMYMYDAFYSPALSDSEFDSKPMVMLVGQYSTGKTSFIRYLIGRDFPGQRIGPEPTTDRFVAVMDGPEERVIPG 106
S + + + V++GLK IY++ ILPLE+ Y++ F+SP D++FD+KPMV+LVGQYSTGKT+FIRYL+ RDFPG RIGPEPTTDRF+AVM +E +IPG
Sbjct: 7 SNNAQKKNSELYESVVEGLKRIYRTKILPLEEQYLFHEFHSPPFDDADFDAKPMVLLVGQYSTGKTTFIRYLLERDFPGIRIGPEPTTDRFIAVMHNEQEGIIPG 111
BLAST of EWM24449.1 vs. NCBI_GenBank
Match: gi|1099097046|ref|XP_018891371.1| (PREDICTED: EH domain-containing protein 1-like [Gorilla gorilla gorilla]) HSP 1 Score: 134.42 bits (337), Expect = 8.788e-38 Identity = 59/91 (64.84%), Postives = 75/91 (82.42%), Query Frame = 0
Query: 16 VIQGLKNIYKSTILPLEQMYMYDAFYSPALSDSEFDSKPMVMLVGQYSTGKTSFIRYLIGRDFPGQRIGPEPTTDRFVAVMDGPEERVIPG 106
V +GL+ +Y +LPLE+ Y + F+SPAL D++FD+KPMV+LVGQYSTGKT+FIR+LI +DFPG RIGPEPTTD F+AVM GP E V+PG
Sbjct: 35 VAEGLRQLYAQKLLPLEEHYRFHEFHSPALEDADFDNKPMVLLVGQYSTGKTTFIRHLIEQDFPGMRIGPEPTTDSFIAVMHGPTEGVVPG 125
BLAST of EWM24449.1 vs. NCBI_GenBank
Match: gi|241690307|ref|XP_002411757.1| (endocytosis/signaling protein EHD1, putative [Ixodes scapularis] >gi|215504592|gb|EEC14086.1| endocytosis/signaling protein EHD1, putative [Ixodes scapularis]) HSP 1 Score: 138.658 bits (348), Expect = 1.019e-37 Identity = 62/91 (68.13%), Postives = 78/91 (85.71%), Query Frame = 0
Query: 16 VIQGLKNIYKSTILPLEQMYMYDAFYSPALSDSEFDSKPMVMLVGQYSTGKTSFIRYLIGRDFPGQRIGPEPTTDRFVAVMDGPEERVIPG 106
V++GLK IYK+ ILPLE+ Y++ F+SP L+D +F+SKPM++LVGQYSTGKT+FIRYL+ RDFPG RIGPEPTTDRF+AVM +E VIPG
Sbjct: 21 VVEGLKQIYKAKILPLEEHYLFHDFHSPPLADPDFESKPMILLVGQYSTGKTTFIRYLLERDFPGIRIGPEPTTDRFIAVMYSDQEGVIPG 111
BLAST of EWM24449.1 vs. NCBI_GenBank
Match: gi|321469395|gb|EFX80375.1| (hypothetical protein DAPPUDRAFT_304007 [Daphnia pulex]) HSP 1 Score: 142.51 bits (358), Expect = 1.107e-37 Identity = 67/106 (63.21%), Postives = 83/106 (78.30%), Query Frame = 0
Query: 8 GRDQATRR-------VIQGLKNIYKSTILPLEQMYMYDAFYSPALSDSEFDSKPMVMLVGQYSTGKTSFIRYLIGRDFPGQRIGPEPTTDRFVAVMDGPEERVIPG 106
G+D+A + V++GLK IYKS ILPLEQ Y + F+SP LSD +FD++PM++LVGQYSTGKT+FIRYL+ +DFPG RIGPEPTTDRF+AVM G E VIPG
Sbjct: 6 GKDEARNKQPEIYDSVVEGLKKIYKSKILPLEQQYFFHDFHSPELSDPDFDARPMILLVGQYSTGKTTFIRYLLEKDFPGIRIGPEPTTDRFIAVMHGDTEGVIPG 111
BLAST of EWM24449.1 vs. NCBI_GenBank
Match: gi|1214018229|ref|XP_021564068.1| (EH domain-containing protein 1-like [Carlito syrichta]) HSP 1 Score: 134.42 bits (337), Expect = 1.494e-37 Identity = 59/91 (64.84%), Postives = 75/91 (82.42%), Query Frame = 0
Query: 16 VIQGLKNIYKSTILPLEQMYMYDAFYSPALSDSEFDSKPMVMLVGQYSTGKTSFIRYLIGRDFPGQRIGPEPTTDRFVAVMDGPEERVIPG 106
V +GL+ +Y +LPLE+ Y + F+SPAL D++FD+KPMV+LVGQYSTGKT+FIR+LI +DFPG RIGPEPTTD F+AVM GP E V+PG
Sbjct: 38 VAEGLRQLYAQKLLPLEEHYRFHEFHSPALEDADFDNKPMVLLVGQYSTGKTTFIRHLIEQDFPGMRIGPEPTTDSFIAVMHGPAEGVVPG 128 The following BLAST results are available for this feature:
BLAST of EWM24449.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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