rna6235, rna6235 (mRNA) Nannochloropsis gaditana

Overview
Namerna6235
Unique Namerna6235
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length612
Alignment locationCM002468.1:49719..50439 -

Link to JBrowse

Properties
Property NameValue
Productreceptor mediated endocytosis protein
Orig transcript idgnl|cribi|Naga_100486g6.7025.mrna
Orig protein idgnl|cribi|Naga_100486g6.7025
GeneRME1
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:49719..50439 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RME1gene6026Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6235rna6235-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24449.1cds6220Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6235 ID=rna6235|Name=rna6235|organism=Nannochloropsis gaditana|type=mRNA|length=612bp
ATGGCGGTGGCGGGAAACTTGCCATTTCGGGGATTGGATCGCTTCGGTGT
CTCTTTCCTGAACCGGTTCGAGGGCTCTGTCTGTCCCTCTGAAGTGCTTC
GCAACATTCACATTGTGGATACTCCCGGGGTGCTGGCCGGGAACAAGCAG
ACGGTGGCTCGCGGGTACGACTTCACCAACGTGTGCGGCTGGTTCGCAGA
GCGGGCCGACCTCATCCTTCTTCTCTTTGATGCGCACAAGCTCGATATAT
CCGATGAATTCAAGGAGGTGATCGAGAAGCTTCGGGGTCACGACGACAAA
ATCCGCTGTGTCCTGAATAAGGCCGACCAGGTGGACCGGCAGAAGCTCAT
GCGGGTATATGGCGCGCTCATGTGGAGTATGGGCAAGGTGATGAAAACGC
CCGAGGGAGAACAAGGAGCTCTTCGAGATGGAGGAGAAAGACTTGATGAA
GGATTTGAAGGACCTGCCCCGAAACTCTGCCATGCGCAAGATCAACGAGC
TCGTCAAGCGGACGCGCCTCTTGCGAGTACATGCTTATATAATCGGGTAC
TTGAAGGAGCAGATGCCGATATTTATGGGCCGGGAGAAGATGCAGGAGCG
CCTCCTTCGTGA
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protein sequence of rna6235

>rna6235-protein ID=rna6235-protein|Name=rna6235|organism=Nannochloropsis gaditana|type=polypeptide|length=116bp
MSTQSDQGRDQATRRVIQGLKNIYKSTILPLEQMYMYDAFYSPALSDSEF
DSKPMVMLVGQYSTGKTSFIRYLIGRDFPGQRIGPEPTTDRFVAVMDGPE
ERVIPGREGGREGDGK
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mRNA from alignment at CM002468.1:49719..50439-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6235 ID=rna6235|Name=rna6235|organism=Nannochloropsis gaditana|type=mRNA|length=721bp|location=Sequence derived from alignment at CM002468.1:49719..50439- (Nannochloropsis gaditana)
CTTAGTTCCTGGCCACGATCGTCACCGGATCCATGAGTACTCAGTCCGAC
CAAGGCCGGGATCAGGCCACCCGGCGCGTCATTCAGGGGCTTAAAAATAT
TTACAAAAGCACGATTTTGCCGCTCGAGCAGGTGAGGAGAGGGGCTGGAG
AGTTAGAGATACAAGGGGACCATGAGCACCAAAGCAGTTAATTACCAATG
GCAGGGATAATCTTTTGCATCAGTTGGTGGCATTTCGGTGCACTGTTGCC
CTGAAAACTTTGGGTTAGATCATGAAATCGCAGCTTATCGAGTCCGCTTC
CTTGCGTTTCATCCTAGATGTACATGTATGACGCCTTCTATTCTCCTGCG
CTTTCGGACTCCGAGTTTGACTCGAAACCCATGGTCATGCTTGTGGGCCA
GTACAGTACCGGGAAGACCTCGGTAAGCCTCCCTCTTTCCCCTTCCCTTC
CTCGCTCTCACCCTTTTCCCCTCCCTTCCCTTTCCACCCCGCCCTCGTGC
TCTGTACTCAGCACATTGCTTGTATGACGGAGGACCATTCGCAGCGTCCA
ACTTCCATCCCTCCCTCCCTCCCCAGTTCATTCGGTACCTGATCGGTCGC
GACTTTCCCGGGCAACGCATTGGTCCTGAGCCCACGACCGACCGGTTCGT
GGCGGTCATGGACGGGCCTGAGGAGAGGGTGATCCCCGGTAGGGAGGGAG
GGAGGGAGGGAGATGGGAAGG
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Coding sequence (CDS) from alignment at CM002468.1:49719..50439-

>rna6235 ID=rna6235|Name=rna6235|organism=Nannochloropsis gaditana|type=CDS|length=1047bp|location=Sequence derived from alignment at CM002468.1:49719..50439- (Nannochloropsis gaditana)
TTCATTCGGTACCTGATCGGTCGCGACTTTCCCGGGCAACGCATTGGTCC
TGAGCCCACGACCGACCGGTTCGTGGCGGTCATGGACGGGCCTGAGGAGA
GGGTGATCCCCGGTAGGGAGGGAGGGAGGGAGGGAGATGGGAAGGATGTA
CATGTATGACGCCTTCTATTCTCCTGCGCTTTCGGACTCCGAGTTTGACT
CGAAACCCATGGTCATGCTTGTGGGCCAGTACAGTACCGGGAAGACCTCG
ATGAGTACTCAGTCCGACCAAGGCCGGGATCAGGCCACCCGGCGCGTCAT
TCAGGGGCTTAAAAATATTTACAAAAGCACGATTTTGCCGCTCGAGCAGT
TCATTCGGTACCTGATCGGTCGCGACTTTCCCGGGCAACGCATTGGTCCT
GAGCCCACGACCGACCGGTTCGTGGCGGTCATGGACGGGCCTGAGGAGAG
GGTGATCCCCGGTAGGGAGGGAGGGAGGGAGGGAGATGGGAAGGATGTAC
ATGTATGACGCCTTCTATTCTCCTGCGCTTTCGGACTCCGAGTTTGACTC
GAAACCCATGGTCATGCTTGTGGGCCAGTACAGTACCGGGAAGACCTCGA
TGAGTACTCAGTCCGACCAAGGCCGGGATCAGGCCACCCGGCGCGTCATT
CAGGGGCTTAAAAATATTTACAAAAGCACGATTTTGCCGCTCGAGCAGTT
CATTCGGTACCTGATCGGTCGCGACTTTCCCGGGCAACGCATTGGTCCTG
AGCCCACGACCGACCGGTTCGTGGCGGTCATGGACGGGCCTGAGGAGAGG
GTGATCCCCGGTAGGGAGGGAGGGAGGGAGGGAGATGGGAAGGATGTACA
TGTATGACGCCTTCTATTCTCCTGCGCTTTCGGACTCCGAGTTTGACTCG
AAACCCATGGTCATGCTTGTGGGCCAGTACAGTACCGGGAAGACCTCGAT
GAGTACTCAGTCCGACCAAGGCCGGGATCAGGCCACCCGGCGCGTCATTC
AGGGGCTTAAAAATATTTACAAAAGCACGATTTTGCCGCTCGAGCAG
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Synonyms
Publications