EWM24449.1, cds6220 (CDS) Nannochloropsis gaditana

Overview
NameEWM24449.1
Unique Namecds6220
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:50309..50407 -
Alignment locationCM002468.1:50018..50122 -
Alignment locationCM002468.1:49719..49863 -

Link to JBrowse

Properties
Property NameValue
Start range49719
Start range.
Protein idEWM24449.1
Productreceptor mediated endocytosis protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100486g6.7025.mrna
GeneRME1
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:50309..50407 -
CM002468.1supercontigCM002468.1:50018..50122 -
CM002468.1supercontigCM002468.1:49719..49863 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0016043cellular component organization
GO:0032456endocytic recycling
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0005525GTP binding
Vocabulary: INTERPRO
TermDefinition
IPR030381G_DYNAMIN_dom
IPR029951EHD3
IPR027417P-loop_NTPase
Homology
BLAST of EWM24449.1 vs. NCBI_GenBank
Match: gi|585105904|gb|EWM24449.1| (receptor mediated endocytosis protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 235.728 bits (600), Expect = 1.508e-78
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0
Query:    1 MSTQSDQGRDQATRRVIQGLKNIYKSTILPLEQMYMYDAFYSPALSDSEFDSKPMVMLVGQYSTGKTSFIRYLIGRDFPGQRIGPEPTTDRFVAVMDGPEERVIPGREGGREGDGK 116
            MSTQSDQGRDQATRRVIQGLKNIYKSTILPLEQMYMYDAFYSPALSDSEFDSKPMVMLVGQYSTGKTSFIRYLIGRDFPGQRIGPEPTTDRFVAVMDGPEERVIPGREGGREGDGK
Sbjct:    1 MSTQSDQGRDQATRRVIQGLKNIYKSTILPLEQMYMYDAFYSPALSDSEFDSKPMVMLVGQYSTGKTSFIRYLIGRDFPGQRIGPEPTTDRFVAVMDGPEERVIPGREGGREGDGK 116          
BLAST of EWM24449.1 vs. NCBI_GenBank
Match: gi|298713481|emb|CBJ27036.1| (RME1, RME-1/EHD family ATPase with a C-terminal EH domain [Ectocarpus siliculosus])

HSP 1 Score: 154.451 bits (389), Expect = 6.928e-42
Identity = 69/98 (70.41%), Postives = 85/98 (86.73%), Query Frame = 0
Query:    9 RDQATRRVIQGLKNIYKSTILPLEQMYMYDAFYSPALSDSEFDSKPMVMLVGQYSTGKTSFIRYLIGRDFPGQRIGPEPTTDRFVAVMDGPEERVIPG 106
            +D+AT  V++GLK +Y + + PLEQ YM+  F+SP L+DSEF+SKP V++ GQYSTGKTSFIRYL+GRDFPGQRIGPEPTTDRFVAVMDG +ERV+PG
Sbjct:    6 QDEATAAVVEGLKRLYHTKLKPLEQTYMFGWFHSPPLTDSEFESKPQVLMCGQYSTGKTSFIRYLLGRDFPGQRIGPEPTTDRFVAVMDGSDERVVPG 103          
BLAST of EWM24449.1 vs. NCBI_GenBank
Match: gi|675379523|gb|KFM72425.1| (EH domain-containing protein 1, partial [Stegodyphus mimosarum])

HSP 1 Score: 139.813 bits (351), Expect = 6.651e-40
Identity = 66/106 (62.26%), Postives = 83/106 (78.30%), Query Frame = 0
Query:    8 GRDQATRR-------VIQGLKNIYKSTILPLEQMYMYDAFYSPALSDSEFDSKPMVMLVGQYSTGKTSFIRYLIGRDFPGQRIGPEPTTDRFVAVMDGPEERVIPG 106
             RD++ RR       V+ GL+ IYKS ILPLE+ Y++  F+SP L D +FD+KPM++LVGQYSTGKT+FIRYL+ +DFPG RIGPEPTTDRF+AVM G +E VIPG
Sbjct:    6 SRDESRRREPELYNTVVDGLRKIYKSKILPLEEYYLFHEFHSPPLDDPDFDAKPMILLVGQYSTGKTTFIRYLLEKDFPGIRIGPEPTTDRFIAVMYGTQETVIPG 111          
BLAST of EWM24449.1 vs. NCBI_GenBank
Match: gi|444724482|gb|ELW65085.1| (EH domain-containing protein 1 [Tupaia chinensis])

HSP 1 Score: 138.272 bits (347), Expect = 1.535e-38
Identity = 60/96 (62.50%), Postives = 78/96 (81.25%), Query Frame = 0
Query:   11 QATRRVIQGLKNIYKSTILPLEQMYMYDAFYSPALSDSEFDSKPMVMLVGQYSTGKTSFIRYLIGRDFPGQRIGPEPTTDRFVAVMDGPEERVIPG 106
            +  R+V +GL+ +Y   +LPLE+ Y +  F+SPAL D++FD+KPMV+LVGQYSTGKT+FIR+LI +DFPG RIGPEPTTD F+AVM GP E V+PG
Sbjct:   23 EGVRQVFEGLRQLYAQKLLPLEEHYRFHEFHSPALEDADFDNKPMVLLVGQYSTGKTTFIRHLIEQDFPGMRIGPEPTTDSFIAVMHGPTEGVVPG 118          
BLAST of EWM24449.1 vs. NCBI_GenBank
Match: gi|1080057395|ref|XP_018570489.1| (PREDICTED: EH domain-containing protein 1-like [Anoplophora glabripennis])

HSP 1 Score: 144.436 bits (363), Expect = 2.046e-38
Identity = 64/98 (65.31%), Postives = 82/98 (83.67%), Query Frame = 0
Query:    9 RDQATRRVIQGLKNIYKSTILPLEQMYMYDAFYSPALSDSEFDSKPMVMLVGQYSTGKTSFIRYLIGRDFPGQRIGPEPTTDRFVAVMDGPEERVIPG 106
            R Q    VI+GLK+IYK+ +LPLEQ Y+++ F+SP L+D++FD+KPM++LVGQYSTGKT+FI+YL+ RDFPG RIGPEPTTDRF+AVM    E VIPG
Sbjct:   18 RQQCYENVIEGLKSIYKNKMLPLEQHYLFNEFHSPPLNDADFDAKPMILLVGQYSTGKTTFIKYLLERDFPGMRIGPEPTTDRFIAVMFAENEGVIPG 115          
BLAST of EWM24449.1 vs. NCBI_GenBank
Match: gi|934151862|gb|KPM02679.1| (EH domain-containing protein 1-like protein [Sarcoptes scabiei])

HSP 1 Score: 140.198 bits (352), Expect = 2.756e-38
Identity = 61/105 (58.10%), Postives = 81/105 (77.14%), Query Frame = 0
Query:    2 STQSDQGRDQATRRVIQGLKNIYKSTILPLEQMYMYDAFYSPALSDSEFDSKPMVMLVGQYSTGKTSFIRYLIGRDFPGQRIGPEPTTDRFVAVMDGPEERVIPG 106
            S  + +   +    V++GLK IY++ ILPLE+ Y++  F+SP   D++FD+KPMV+LVGQYSTGKT+FIRYL+ RDFPG RIGPEPTTDRF+AVM   +E +IPG
Sbjct:    7 SNNAQKKNSELYESVVEGLKRIYRTKILPLEEQYLFHEFHSPPFDDADFDAKPMVLLVGQYSTGKTTFIRYLLERDFPGIRIGPEPTTDRFIAVMHNEQEGIIPG 111          
BLAST of EWM24449.1 vs. NCBI_GenBank
Match: gi|1099097046|ref|XP_018891371.1| (PREDICTED: EH domain-containing protein 1-like [Gorilla gorilla gorilla])

HSP 1 Score: 134.42 bits (337), Expect = 8.788e-38
Identity = 59/91 (64.84%), Postives = 75/91 (82.42%), Query Frame = 0
Query:   16 VIQGLKNIYKSTILPLEQMYMYDAFYSPALSDSEFDSKPMVMLVGQYSTGKTSFIRYLIGRDFPGQRIGPEPTTDRFVAVMDGPEERVIPG 106
            V +GL+ +Y   +LPLE+ Y +  F+SPAL D++FD+KPMV+LVGQYSTGKT+FIR+LI +DFPG RIGPEPTTD F+AVM GP E V+PG
Sbjct:   35 VAEGLRQLYAQKLLPLEEHYRFHEFHSPALEDADFDNKPMVLLVGQYSTGKTTFIRHLIEQDFPGMRIGPEPTTDSFIAVMHGPTEGVVPG 125          
BLAST of EWM24449.1 vs. NCBI_GenBank
Match: gi|241690307|ref|XP_002411757.1| (endocytosis/signaling protein EHD1, putative [Ixodes scapularis] >gi|215504592|gb|EEC14086.1| endocytosis/signaling protein EHD1, putative [Ixodes scapularis])

HSP 1 Score: 138.658 bits (348), Expect = 1.019e-37
Identity = 62/91 (68.13%), Postives = 78/91 (85.71%), Query Frame = 0
Query:   16 VIQGLKNIYKSTILPLEQMYMYDAFYSPALSDSEFDSKPMVMLVGQYSTGKTSFIRYLIGRDFPGQRIGPEPTTDRFVAVMDGPEERVIPG 106
            V++GLK IYK+ ILPLE+ Y++  F+SP L+D +F+SKPM++LVGQYSTGKT+FIRYL+ RDFPG RIGPEPTTDRF+AVM   +E VIPG
Sbjct:   21 VVEGLKQIYKAKILPLEEHYLFHDFHSPPLADPDFESKPMILLVGQYSTGKTTFIRYLLERDFPGIRIGPEPTTDRFIAVMYSDQEGVIPG 111          
BLAST of EWM24449.1 vs. NCBI_GenBank
Match: gi|321469395|gb|EFX80375.1| (hypothetical protein DAPPUDRAFT_304007 [Daphnia pulex])

HSP 1 Score: 142.51 bits (358), Expect = 1.107e-37
Identity = 67/106 (63.21%), Postives = 83/106 (78.30%), Query Frame = 0
Query:    8 GRDQATRR-------VIQGLKNIYKSTILPLEQMYMYDAFYSPALSDSEFDSKPMVMLVGQYSTGKTSFIRYLIGRDFPGQRIGPEPTTDRFVAVMDGPEERVIPG 106
            G+D+A  +       V++GLK IYKS ILPLEQ Y +  F+SP LSD +FD++PM++LVGQYSTGKT+FIRYL+ +DFPG RIGPEPTTDRF+AVM G  E VIPG
Sbjct:    6 GKDEARNKQPEIYDSVVEGLKKIYKSKILPLEQQYFFHDFHSPELSDPDFDARPMILLVGQYSTGKTTFIRYLLEKDFPGIRIGPEPTTDRFIAVMHGDTEGVIPG 111          
BLAST of EWM24449.1 vs. NCBI_GenBank
Match: gi|1214018229|ref|XP_021564068.1| (EH domain-containing protein 1-like [Carlito syrichta])

HSP 1 Score: 134.42 bits (337), Expect = 1.494e-37
Identity = 59/91 (64.84%), Postives = 75/91 (82.42%), Query Frame = 0
Query:   16 VIQGLKNIYKSTILPLEQMYMYDAFYSPALSDSEFDSKPMVMLVGQYSTGKTSFIRYLIGRDFPGQRIGPEPTTDRFVAVMDGPEERVIPG 106
            V +GL+ +Y   +LPLE+ Y +  F+SPAL D++FD+KPMV+LVGQYSTGKT+FIR+LI +DFPG RIGPEPTTD F+AVM GP E V+PG
Sbjct:   38 VAEGLRQLYAQKLLPLEEHYRFHEFHSPALEDADFDNKPMVLLVGQYSTGKTTFIRHLIEQDFPGMRIGPEPTTDSFIAVMHGPAEGVVPG 128          
The following BLAST results are available for this feature:
BLAST of EWM24449.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105904|gb|EWM24449.1|1.508e-78100.00receptor mediated endocytosis protein, partial [Na... [more]
gi|298713481|emb|CBJ27036.1|6.928e-4270.41RME1, RME-1/EHD family ATPase with a C-terminal EH... [more]
gi|675379523|gb|KFM72425.1|6.651e-4062.26EH domain-containing protein 1, partial [Stegodyph... [more]
gi|444724482|gb|ELW65085.1|1.535e-3862.50EH domain-containing protein 1 [Tupaia chinensis][more]
gi|1080057395|ref|XP_018570489.1|2.046e-3865.31PREDICTED: EH domain-containing protein 1-like [An... [more]
gi|934151862|gb|KPM02679.1|2.756e-3858.10EH domain-containing protein 1-like protein [Sarco... [more]
gi|1099097046|ref|XP_018891371.1|8.788e-3864.84PREDICTED: EH domain-containing protein 1-like [Go... [more]
gi|241690307|ref|XP_002411757.1|1.019e-3768.13endocytosis/signaling protein EHD1, putative [Ixod... [more]
gi|321469395|gb|EFX80375.1|1.107e-3763.21hypothetical protein DAPPUDRAFT_304007 [Daphnia pu... [more]
gi|1214018229|ref|XP_021564068.1|1.494e-3764.84EH domain-containing protein 1-like [Carlito syric... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6235rna6235Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications