rna6233, rna6233 (mRNA) Nannochloropsis gaditana

Overview
Namerna6233
Unique Namerna6233
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1219
Alignment locationCM002468.1:43352..44115 +

Link to JBrowse

Properties
Property NameValue
Productbifunctional 6-phosphofructo-2-kinase
Orig transcript idgnl|cribi|Naga_100969g3.1409.mrna
Orig protein idgnl|cribi|Naga_100969g3.1409
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:43352..44115 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100969g3gene6024Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6233rna6233-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24455.1cds6218Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6233 ID=rna6233|Name=rna6233|organism=Nannochloropsis gaditana|type=mRNA|length=1219bp
CCTCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCCACCCCCGTCCCTCCCCCTCCCGCTCCCGCCCC
AGGCTCTGGCTACTTCACGGACGCGCAGCTAGGCTGCTACCGCGCCGCGA
AGAACCTCTGTCCTCGAGCAGGGGCGAACCGGATGGCTTTGCTCATGTGC
GCCGAGCAGCAAGTGCGAGCTTTCAGGTACAGCGCCGACTGTGTGGCCCT
GCTGAAAGAATCGGATTTGGACGGGCTGAGGGAGGCAACTGCCTCCGACT
AGACACAGCCACCAAAGCGGACGCTCGTGTGGTCAATTCTGGTGCATGAA
GAGGGGGAGGGGAGGGAGGGCTAAAGCCTCGAGCTCGGCGTGTGATGGGG
AAATGTGCTGGCGCACACGGGGAGGGGCTCCTGCTGGTCCAAGAATGATG
AGGTTGTGAGGATGGGGAAGAGGAGGGAAGAGGAGGGAAGACGCGGAAGG
TGGCTTTTGTTTTTGTTGAAGAAATAGGGCGGCGGTGAGAGGGAGGGAAA
TGGACGAGGGGGGGAAGCGCGAGGATAGCAGAGGGGGGGGAGGGCGGGAG
GGTGGGCTGATGGCAAGGAGAGGGGTTGGAGGGAAGGGCATTGGAAGCGG
TAGGGTAGGAGGGGGTGGTGATGTAGAATAGGGGGTAGGAGGCTGAGGTC
GATTGAGGGAGTGTGTGTGCCCCCGCAGGGACCGAACGACCATAAATATG
AAGGGACAGCCCTTGTTGCGATGTGCGAGAAGTGCCGACCGCAGCCAGGG
AGCCTTTCCTCTCCGCTTTTTTCATCCGGACGTGAGACTCAGGCCCCGTC
ACTAGTGCAGCCAAAGAGTCGCCCGGGAGGGTTGACGAAAAGATCGGACG
GACCTCCCTCGGGCAGGAAGGAGGGGCGCGGAGGGAGGGGTGTGTGGTGG
AAGTGTCGTTTAAGGAGCCGGGCCAGGATGTGGCGGATCGTGGGGTTGAT
AACACGGTTAGTATAGTGGTTGCGTGTGGATGTGGATGAAGGAGGGCGAT
TTGAATTTAACAAGGTAAACGCTCGTAGACTAGGTGCCTTCTCCTTCCTT
TTTGAAAGAAAATTTGCGAAGATTGTAAACGGTGGGGAAATGTTCCCAAG
TGCCAATATAAATGGCGAT
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protein sequence of rna6233

>rna6233-protein ID=rna6233-protein|Name=rna6233|organism=Nannochloropsis gaditana|type=polypeptide|length=110bp
MLALLSGESYLDVIARLEPIIIEMERHREPLLIVGHQGILRIIYAFYMGL
TRAQAPYVSIPLNCVVQLEPSAFHCHEERHILYTPTKALPTDGQDEPINK
YEMMTDPQSH
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mRNA from alignment at CM002468.1:43352..44115+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6233 ID=rna6233|Name=rna6233|organism=Nannochloropsis gaditana|type=mRNA|length=764bp|location=Sequence derived from alignment at CM002468.1:43352..44115+ (Nannochloropsis gaditana)
ATGCTGGCCTTGCTCTCGTAgggctctctctccccctcgaccgTCGAAGA
AGCCCTCTCTTCacatcgcctccccctccctccctccacccctccctccc
ccccctctcgcgCAGAGGGGAGTCCTACCTGGACGTGATAGCCCGGCTCG
AGCCCATCATCATCGAAATGGAGAGACATCGAGAGCCACTCCTCATCGTC
GGCCACCAGgtttgccctctctccgccctcccgccctctttcctctcctc
ccgcccttcctccccttccctgcccccggGACATTCTTGCTTCTCTTGGC
CTCTACGAAACGTCAGCCTCCATCGTCgacaccctcccttcttacaccct
ccctccctccttccctccttccctccttcccttcctcccttcccctttcc
tctagGGTATACTGCGCATCATCTACGCATTCTACATGGGCCTCACTCGG
GCGCAAGCCCCCTACGTCTCCATCCCTCTTAACTGTGTCGTGCAGCTCGA
GCCGAGTGCCTTCCATTGTCACGAGGAGGTGGGTCTtatctttcctctct
ccctgtctctcgcttcctcttcttccttctcttccttccttttcgcaGAC
GAGTCGTCCAACGACCAGcacgcctctctctcccttcctccttccctccc
tccctccctccgcagcGCCACATCCTCTATACTCCCACGAAAGCTCTCCC
CACGGACGGGCAGGACGAGCCGATCAACAAGTACGAGATGATGACCGACC
CGCAGTCGCACTAG
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Coding sequence (CDS) from alignment at CM002468.1:43352..44115+

>rna6233 ID=rna6233|Name=rna6233|organism=Nannochloropsis gaditana|type=CDS|length=1332bp|location=Sequence derived from alignment at CM002468.1:43352..44115+ (Nannochloropsis gaditana)
ATGCTGGCCTTGCTCTCAGGGGAGTCCTACCTGGACGTGATAGCCCGGCT
CGAGCCCATCATCATCGAAATGGAGAGACATCGAGAGCCACTCCTCATCG
TCGGCCACCAGGGTATACTGCGCATCATCTACGCATTCTACATGGGCCTC
ACTCGGGCGCAAGCCCCCTACGTCTCCATCCCTCTTAACTGTGTCGTGCA
GCTCGAGCCGAGTGCCTTCCATTGTCACGAGGAGcGCCACATCCTCTATA
CTCCCACGAAAGCTCTCCCCACGGACGGGCAGGACGAGCCGATCAACAAG
TACGAGATGATGACCGACCCGCAGTCGCACTAGATGCTGGCCTTGCTCTC
AGGGGAGTCCTACCTGGACGTGATAGCCCGGCTCGAGCCCATCATCATCG
AAATGGAGAGACATCGAGAGCCACTCCTCATCGTCGGCCACCAGGGTATA
CTGCGCATCATCTACGCATTCTACATGGGCCTCACTCGGGCGCAAGCCCC
CTACGTCTCCATCCCTCTTAACTGTGTCGTGCAGCTCGAGCCGAGTGCCT
TCCATTGTCACGAGGAGcGCCACATCCTCTATACTCCCACGAAAGCTCTC
CCCACGGACGGGCAGGACGAGCCGATCAACAAGTACGAGATGATGACCGA
CCCGCAGTCGCACTAGATGCTGGCCTTGCTCTCAGGGGAGTCCTACCTGG
ACGTGATAGCCCGGCTCGAGCCCATCATCATCGAAATGGAGAGACATCGA
GAGCCACTCCTCATCGTCGGCCACCAGGGTATACTGCGCATCATCTACGC
ATTCTACATGGGCCTCACTCGGGCGCAAGCCCCCTACGTCTCCATCCCTC
TTAACTGTGTCGTGCAGCTCGAGCCGAGTGCCTTCCATTGTCACGAGGAG
cGCCACATCCTCTATACTCCCACGAAAGCTCTCCCCACGGACGGGCAGGA
CGAGCCGATCAACAAGTACGAGATGATGACCGACCCGCAGTCGCACTAGA
TGCTGGCCTTGCTCTCAGGGGAGTCCTACCTGGACGTGATAGCCCGGCTC
GAGCCCATCATCATCGAAATGGAGAGACATCGAGAGCCACTCCTCATCGT
CGGCCACCAGGGTATACTGCGCATCATCTACGCATTCTACATGGGCCTCA
CTCGGGCGCAAGCCCCCTACGTCTCCATCCCTCTTAACTGTGTCGTGCAG
CTCGAGCCGAGTGCCTTCCATTGTCACGAGGAGcGCCACATCCTCTATAC
TCCCACGAAAGCTCTCCCCACGGACGGGCAGGACGAGCCGATCAACAAGT
ACGAGATGATGACCGACCCGCAGTCGCACTAG
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Synonyms
Publications