rna6224, rna6224 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6224
Unique Name	rna6224
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2132
Alignment location	CM002468.1:7406..8169 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100301g4.10495.mrna
Orig protein id	gnl\|cribi\|Naga_100301g4.10495
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:7406..8169 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100301g4	gene6013	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6224	rna6224-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24465.1	cds6209	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:7406..8169-
coding sequence from alignment at CM002468.1:7406..8169-

mRNA sequence

>rna6224 ID=rna6224|Name=rna6224|organism=Nannochloropsis gaditana|type=mRNA|length=2132bp
TCTGCTGTTGGCATTCCACACACAATCCTACCCGGAATTGACCCTTCTGG
CTTTAACAAGCCCAGGACAGATGCTCAAACATTTTGAATACCAAGAAATC
TAGTCTACCTTCCCTAGCAAATAGATGAATATCGAACCCCTCGACTCAAG
TTTATACTCAAACTTGATTGGGAGGTTAAATGAGGACTGTAGAAGTGTCA
GCGCCGTCGACGGCGAACAGAAAACCCCTCGTCTCCTTAGTGGCAATTGA
TGAGGAAAAGGATACTTGTTAGCTTGCTTTTTTGTTTAGTATTTATGATC
TCTGCTTTCGTCCTTCGTACAGTCGAAAGCTTCATGCCATCTCAAAATAT
TAGGCTAGAGCTGACTACGTATCTTCAGGGTGGAGCCTACCAACGCTTAC
GTGCACACCCATTGAAGTAAGAGAAAGCTTTTCTCATTGCGTGCTTTGTA
CAACTTCTTTTCCACCCGGCAATGCTGCATTTTTCTTCACGCCTGCACAA
CTTGCACAGGGTGCTGGGGTTCTGCTGCATGCTGGAATCTTCCAGCAAAC
ATTTCCTCGGCAGTCTTGTGCTCGCCTTCCTGTGTTGTCTCATGGTTGAG
ACATCCCCTCATGATTCTAGTATTGACGCCGGTGCTCACATAGCTGAACT
TAAGCATCTTGCACACTGTATGGCAGTTCGCCTTCTTTGTCTCCATCGTC
AGCATGAAAAGCGGGAGAAGGAGCAGCAGCAGCAGGAGGAGGGTACGCAC
CAGGGCTCTTTTCCCCCTCGTTGCGTCTTCAGCGACCTTGATGGTACGCT
ATTACACTTTGGTGGCAATTTATTGAAAGAAAGCTATGAAATTCTTCCGT
TTGATGGCGCCGAAAAAGAAGCACTGTCCATTTTCAAGGACATTGGTCGG
CGAGAGATGGCAGGTCAACCGAGCACCCAGCACGAGGAAGAGCACGCCGC
CGTCTCCCTCGGTCCCCTGTGGGGCTCGGCACCCCCTTCTCAAGCTACGT
GCTTACACTCCTCCTCCGAGCTTTCCGCGGATTCCCAGGTTCCTTCCCCA
CCCGCTTCCTCTTCCCCGCCGGCCCCACCTTGTGTAGGCCGTACGGGTTC
GTCAGCCCCTGCCCCTCGATACGTGACCCTGAGATACCAGCCCGACGGCA
CAACTCGCACCTGCATCGAGCTCCCTTCCCTATCGTCAGGCCCTGGCTAT
ATCTCCGTCCGGACCTTGGAGCTGGTGCAGGCGATCCGGCGGGAGGGCTG
CCTCTTCGTCCTGCTCACCGGGGCGCGCAGCAGCACTTACCTGATGCGTC
GGCGCACAGGCCTGCCAGTGGTAGACTACGAATGTATCGAGGGCGGAGGC
AGACTCATTCACGACCCTAACGCCCGCCTGGACCTGGCGTCGGACGCACA
CAGCGAGGGGCATGAGGGCTGGGACCGCACGTGGAAGGAGGCCGTCGGGC
CCCTCCAGGGGCTCTGGGGACTCTACGAGGAGCTGAAAGGAGAAGGGTGG
GGCGTGGACGGGCGTGACTATTACACGAGTTTTCGGGTAGATACGAGGGG
CAAGATGGGGGAGCAGTGGGAGGGCGTCAAGAGTCGGCTTCCTGCTCTAG
GTCTCTCCTCCTCCTTCAACCTGGGGAAAGCCGACATCTACCCTCGTACG
TCCGGCAAGGCGACTGCCCTTAGCCGACTGCTCCCTCGCCTTTTTCTGCA
CCCTTCCCAGTGTGTAGTCTTGTTTGACGACGACAACGACCTGGGTATGG
CCGATGTCTGTGCGTCCGGGAGGAGGATCGCTGTCTCGATCACGCACCCA
TCCGTGCAAGCCTACGTGAATGCAGACCCTCGCGTTGAAACAGTGACTAG
GCCAGGGATCTTGGGCTCCGAGGAGGCCCTAGAGCGTGTGTTGGCTTCGC
TGGTGTAGCGGGTGGGCTCATTCGAGGCTTCTCCAGTCCGTGTCGACTGA
TGTCGATGAACGCCCCTACGATTACTGCCTGGCCTGCAGAGCTCTACGAG
GCTGGTGTATTATTTTCTGCAGATGGGCAAGGCTGATTATTACGAGGACG
TAGGATTGGAAAACTTTGGGGCAAAGAAAGTAAATATTTTTTTTGGGAAG
CAAAAGAATCTCAGAGCAATGTGCATTACGTG

protein sequence of rna6224

>rna6224-protein ID=rna6224-protein|Name=rna6224|organism=Nannochloropsis gaditana|type=polypeptide|length=132bp
MDFKCVFPAIYVVHLVKHATSPRKTFRGLISSVNFSTLETAYRHATLNNT
ALEKYYPHGLKSAASKPSYTSIYDSAIPILPPMIRRKLHWSAIRLCIHRK
TGTRFYLLSFILICGVVSPKALHAFIYTLRPQ

mRNA from alignment at CM002468.1:7406..8169-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6224 ID=rna6224|Name=rna6224|organism=Nannochloropsis gaditana|type=mRNA|length=764bp|location=Sequence derived from alignment at CM002468.1:7406..8169- (Nannochloropsis gaditana)
ATGGACTTTAAGTGTGTTTTCCCTGCAATTTATGTCGTCCACCTTGTAAA
ACATGCAACCTCCCCCCGTAAGACATTTCGAGGTCTCATCTCCTCTGTCA
ATTTCTCTACCCTCGAAACCGCATACCGTCATGCTACTTTGAATAATACT
GCTCTCGAGAAGTACTATGTAACTTTTGCAGTGGACTGATTACAGGAACC
CAACAACTACTGAGTGCAAAAAGGTTTGGGAAAGAGTGGAATGAGATGTC
GCACTGGCAACGTGTTGATGCCAGACCCCTTTACGGAAAGCTTGAATAGG
GAAGAATAGACTGTACTGATCCCGTTTTTTCCGAGTCATGGACATTCTTT
CAATTCAAACGATCTGACAAGTTTCACTCTTTAGCCGCACGGGTTGAAGT
CAGCAGCCTCAAAACCTTCCTACACGTCTATATATGATTCCGCAATCCCG
ATTTTACCCCCGTCCACCTTACGCACCTTTACTTCTGTCCCTATTCTCAG
CCTTCGTCGTCTGCTACTTTACTGATCTTTCCGCTTCTTTCCAGCACCCA
GTGGAAGGAATAAACCTCCTCCTTGACACAATCATCTGTGGAAAGTCCTA
CGGCATACAGTATGATTAGGAGGAAGCTTCATTGGTCAGCCATACGGCTG
TGCATCCATCGTAAAACGGGAACAAGATTCTATTTATTGTCGTTCATTCT
GATATGTGGAGTGGTGTCACCGAAAGCCTTGCACGCGTTCATATATACGT
TGCGTCCCCAGTAG

Coding sequence (CDS) from alignment at CM002468.1:7406..8169-

>rna6224 ID=rna6224|Name=rna6224|organism=Nannochloropsis gaditana|type=CDS|length=1197bp|location=Sequence derived from alignment at CM002468.1:7406..8169- (Nannochloropsis gaditana)
TATGATTAGGAGGAAGCTTCATTGGTCAGCCATACGGCTGTGCATCCATC
GTAAAACGGGAACAAGATTCTATTTATTGTCGTTCATTCTGATATGTGGA
GTGGTGTCACCGAAAGCCTTGCACGCGTTCATATATACGTTGCGTCCCCA
GTAGCCGCACGGGTTGAAGTCAGCAGCCTCAAAACCTTCCTACACGTCTA
TATATGATTCCGCAATCCCGATTTTACCCCCATGGACTTTAAGTGTGTTT
TCCCTGCAATTTATGTCGTCCACCTTGTAAAACATGCAACCTCCCCCCGT
AAGACATTTCGAGGTCTCATCTCCTCTGTCAATTTCTCTACCCTCGAAAC
CGCATACCGTCATGCTACTTTGAATAATACTGCTCTCGAGAAGTACTATT
ATGATTAGGAGGAAGCTTCATTGGTCAGCCATACGGCTGTGCATCCATCG
TAAAACGGGAACAAGATTCTATTTATTGTCGTTCATTCTGATATGTGGAG
TGGTGTCACCGAAAGCCTTGCACGCGTTCATATATACGTTGCGTCCCCAG
TAGCCGCACGGGTTGAAGTCAGCAGCCTCAAAACCTTCCTACACGTCTAT
ATATGATTCCGCAATCCCGATTTTACCCCCATGGACTTTAAGTGTGTTTT
CCCTGCAATTTATGTCGTCCACCTTGTAAAACATGCAACCTCCCCCCGTA
AGACATTTCGAGGTCTCATCTCCTCTGTCAATTTCTCTACCCTCGAAACC
GCATACCGTCATGCTACTTTGAATAATACTGCTCTCGAGAAGTACTATTA
TGATTAGGAGGAAGCTTCATTGGTCAGCCATACGGCTGTGCATCCATCGT
AAAACGGGAACAAGATTCTATTTATTGTCGTTCATTCTGATATGTGGAGT
GGTGTCACCGAAAGCCTTGCACGCGTTCATATATACGTTGCGTCCCCAGT
AGCCGCACGGGTTGAAGTCAGCAGCCTCAAAACCTTCCTACACGTCTATA
TATGATTCCGCAATCCCGATTTTACCCCCATGGACTTTAAGTGTGTTTTC
CCTGCAATTTATGTCGTCCACCTTGTAAAACATGCAACCTCCCCCCGTAA
GACATTTCGAGGTCTCATCTCCTCTGTCAATTTCTCTACCCTCGAAACCG
CATACCGTCATGCTACTTTGAATAATACTGCTCTCGAGAAGTACTAT

Synonyms

Publications