EWM24465.1, cds6209 (CDS) Nannochloropsis gaditana

Overview
NameEWM24465.1
Unique Namecds6209
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:8002..8169 -
Alignment locationCM002468.1:7709..7785 -
Alignment locationCM002468.1:7406..7559 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24465.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100301g4.10495.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:8002..8169 -
CM002468.1supercontigCM002468.1:7709..7785 -
CM002468.1supercontigCM002468.1:7406..7559 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of EWM24465.1 vs. NCBI_GenBank
Match: gi|585105932|gb|EWM24465.1| (hypothetical protein Naga_100301g4 [Nannochloropsis gaditana])

HSP 1 Score: 270.396 bits (690), Expect = 6.731e-92
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0 
Query:    1 MDFKCVFPAIYVVHLVKHATSPRKTFRGLISSVNFSTLETAYRHATLNNTALEKYYPHGLKSAASKPSYTSIYDSAIPILPPMIRRKLHWSAIRLCIHRKTGTRFYLLSFILICGVVSPKALHAFIYTLRPQ 132
            MDFKCVFPAIYVVHLVKHATSPRKTFRGLISSVNFSTLETAYRHATLNNTALEKYYPHGLKSAASKPSYTSIYDSAIPILPPMIRRKLHWSAIRLCIHRKTGTRFYLLSFILICGVVSPKALHAFIYTLRPQ
Sbjct:    1 MDFKCVFPAIYVVHLVKHATSPRKTFRGLISSVNFSTLETAYRHATLNNTALEKYYPHGLKSAASKPSYTSIYDSAIPILPPMIRRKLHWSAIRLCIHRKTGTRFYLLSFILICGVVSPKALHAFIYTLRPQ 132
The following BLAST results are available for this feature:
BLAST of EWM24465.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585105932|gb|EWM24465.1|6.731e-92100.00hypothetical protein Naga_100301g4 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6224rna6224Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications