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Properties
| Property Name | Value |
|---|
| Product | pyoverdine thioesterase component |
| Orig transcript id | gnl|cribi|Naga_100782g1.2122.mrna |
| Orig protein id | gnl|cribi|Naga_100782g1.2122 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002467.1 | supercontig | CM002467.1:823051..824478 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6200 ID=rna6200|Name=rna6200|organism=Nannochloropsis gaditana|type=mRNA|length=1554bp
ATATTCCCGCGTATTATCGCGTAACATTTTCTATTTTTACCTTACAGACA
TCTTGACAATCATGGGGTGTCGCCTCACTGACTCCCTGGCCCTTCCAATG
CCTGTGTTCTTGATCCTACTGGCGATTGCCGCCCCGACAGTCGTCTGGTC
ATTCACTTACTTCCTTCCCTTGATCTTCATGAAGCTGCTGGGCCCTCAAG
ACTTGAAAAAGAAGTACAACGCTCAATGGGCTCTCGTCACGGGGGGTTCT
TCCGGCATCGGGCGGGCCATCGTGGATCGATTAGCTATGCAGGGCTTGAA
TGTCTGCGTCGTCTCCATGGATGACGACTTGCTCAAGAACACTGTGAAGG
AGCTTCAAAGCGCTTTCCCCAAGCAGGAGTTCCGCGCCGTTGGCGTTTTA
TTCGCCCCCGGTCAAGCCTACCTCCCCAAGATTATTTCGGCAACCAAGGA
TATCGACGTCCAGATTATTTTCAACAACGCGGGCTATATTCTCACAGGTT
TCTTCGACTCGCAGCCGTTGGAGAAGCAGCTCGCCAACGTGGAATGCAAC
GCCACGGCCGCCGTTGGCATTACGCACCATTTTCTCCAGAAGCTCATACA
GAAAAAGTTGCCGGGCTGCATCGTCTTCACTTCCTCGGTGTCTGGGTACA
TGCCCTCGCCCTTCTCCTCCATGTATGGCGCCACCAAGGCGTTCCTCTCC
CAGTTCGCAGCCTGTCTCGCGGTGGAAGTCAAAAGCCGAGGCATCGACGT
GATGAGCGTGCACCCCTCTCCTGTCGCCTCCCGCTTCTACGAGAAGACCC
ACCAGATGGAAATGCTGGACATGGTGAAAAAAACAGCCGTCGCACCCGAT
GAGCTTCCCTCCCAGATTTTCAGTGGGATCGGACGCTGCCATTGGTATGA
CCAGGTGAGCGATAATCCCTCCCCCCACCCTCCTTCCCGTTTCGATTGCC
CTGTCAGGACCCGTACCTCCCAACTCGCTCGTTCAGTCAACCTTTTTAAA
GCTTGCCATACTTTCTTTTTTCCCCACATTTATCCTCTTTTCACCTTGGC
TTTTTTTTGGGGGGGGCCTTGGCTTTCCACACCGATCTTGTCATGTCCGA
CACACCTCTTTTCGGGGCTTTGAAGGGCACCTTTGCCGTGTTGGTGCGAG
CAGGAACAGCCCCCTTGGCCTACAATGCTATGGTTCAAGGGTTTGCGGCA
ATTGCACATTGCCTCCCGGACTTTATCAAGTACAACAAGGAACGATGAGG
GCTACGCAGTGAAAAAATATGGTGAGGGAGGCCTTACAATAGGTTGGAAA
CGAAAAGGTGAAAGTTATTTGGTCGGCGGATAGCCTCCAAAACGTGATAG
AAAGTTTGCACCAGGAATAGGTCTTCCATGTAATTTTTTTTCCCGGAAAA
AAAAATGACGACCTGAAAATGTTAGTGGGACGATAAGAAGTCGTCGGTGA
ATCGAACAGCCACAATTGGACGGGACTCCAGTCATGTGCAGGCTTACGTC
ATATAATTATTTCTTTGGCGGAATCGGGAGCACGAGCTTGTCCTCCGAGG
CGGG back to topprotein sequence of rna6200 >rna6200-protein ID=rna6200-protein|Name=rna6200|organism=Nannochloropsis gaditana|type=polypeptide|length=369bp
MGCCGSRPSTASRCAAKNSTIPPSPVAPLQGEELRACFVTPPASATTNNL
PSRFLLYRLPWEGTTSTIFDDWRQLPYVEVVTLVLPARLGKSITKHPKNV
RVMANHLAHAISSSLNNKDAQKKGPGKERAPAPAQPFVLFGHSFMGGLLA
LEVARALIDIYRLPPHSIVISACPSPPASSSPSSYSTRLSSLPTPQLLAF
LVSTGALSAHLAQSKETRTTLLPLFKADLAAVDAYMLSPSSSLPSSLPLP
CPLLAIACEGDTLATAESMEGWRSFTSSSFSLSSLPLSLPPSTDRHHHVR
PASEALFRALSLHLHRQPILTRDVQVLLPSLPPSLPPSFSASLSPHVPSC
PFSLLAATVSWRCSVHPCI back to topmRNA from alignment at CM002467.1:823051..824478+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6200 ID=rna6200|Name=rna6200|organism=Nannochloropsis gaditana|type=mRNA|length=1428bp|location=Sequence derived from alignment at CM002467.1:823051..824478+ (Nannochloropsis gaditana)
CGGGCATCGTCTTGCTGACTCCGTGACGGCACGTTTCCTACCCCCCGATA
AGGACCGCGCTTGGCGTATTTTGTTCTTCCTGTACCAAGGGATAGGTCCA
TACATGCTGGCTTAAAATCTTCTATAAGCTGACTTCATGTCTACGAGGGC
GAATACATGCTTGGTGTCTGGTGTCGTGGATTTGGCAATCCAAGGCATTG
AATGTTTTTGTTTTCGGACGGGTTTCGACAGCCTGTTCAATTTCTCCTCG
CTTAAAGGTAACAGCCAGGGAAAACTCAATTTCACACTCATCTACCTCCA
GTCACTCACAAGTGCGAGCCATGGGTTGCTGTGGAAGCAGACCATCGACT
GCTTCCCGTTGCGCGGCTAAAAATTCTACAATTCCACCATCCCCTGTGGC
GCCATTGCAAGGGGAGGAACTACGCGCATGTTTCGTtaccccccccgcct
ctgccaCCACCAATAACCTTCCATCGCGCTTCCTTCTCTACCGTCTCCCT
TGGGAGGGAACTACCAGCACTATCTTTGATGACTGGCGCCAGCTTCCCTA
CGTGGAAGTTGTCACCCTCGTGCTCCCGGCCCGGCTGGGGAAATCAATAA
CGAAGCATCCAAAGAATGTACGCGTCATGGCGAATCACCTCGCCCACGCC
ATCAGCAGCTCCCTGAACAATAAAGATGCACAAAAAAAAGGcccaggaaa
agaaagagcgcCAGCTCCGGCACagcccttcgtcctcttcggccACAGTT
TTATGGGGGGTCTTCTAGCGTTGGAGGTCGCGCGCGCTTTAATCGACATC
TACCGCTTGCCGCCTCACAGCATTGTCATCTCcgcttgcccctcccctcc
cgcctcgtcctccccctcgtcctacTCGACCCGCCTCTCTTCGCTCCCCA
CGCCCCagctccttgccttccttgtTTCCACCGGCGCCCTGTCCGCCCAC
CTCGCGCAGAGCAAAGAGACGAGGacaaccctcctccccctcttcaaGGC
TGACCTCGCTGCAGTCGACGCCTAcatgctctccccctcttcctccctcc
cttcctccctccctctcccctgccctctcctggCCATCGCCTGTGAGGGC
GACACTCTGGCAACCGCTGAGAGCATGGAGGGCTGGCgctctttcacctc
ctcctccttcagcctctcctccctccctctctccctccctccttccacgg
accgccaccaccacgtccgtCCTGCCTCGGAGGCACTTTTTCGTGCCCTT
TCCCTACACCTTCACCGTCAACCCATTCTCACACGCGACGTCCAGgtgct
tcttccctcccttcctccctccctccctccttctttctctgcctccctct
ctccccatgTTCCATCCTGTCCGTTTTCACTTCTGGCAGCAACAGTTTCG
TGGCGTTGCTCTGTTCATCCCTGTATAC back to topCoding sequence (CDS) from alignment at CM002467.1:823051..824478+ >rna6200 ID=rna6200|Name=rna6200|organism=Nannochloropsis gaditana|type=CDS|length=1108bp|location=Sequence derived from alignment at CM002467.1:823051..824478+ (Nannochloropsis gaditana)
ATGGGTTGCTGTGGAAGCAGACCATCGACTGCTTCCCGTTGCGCGGCTAA
AAATTCTACAATTCCACCATCCCCTGTGGCGCCATTGCAAGGGGAGGAAC
TACGCGCATGTTTCGTtaccccccccgcctctgccaCCACCAATAACCTT
CCATCGCGCTTCCTTCTCTACCGTCTCCCTTGGGAGGGAACTACCAGCAC
TATCTTTGATGACTGGCGCCAGCTTCCCTACGTGGAAGTTGTCACCCTCG
TGCTCCCGGCCCGGCTGGGGAAATCAATAACGAAGCATCCAAAGAATGTA
CGCGTCATGGCGAATCACCTCGCCCACGCCATCAGCAGCTCCCTGAACAA
TAAAGATGCACAAAAAAAAGGcccaggaaaagaaagagcgcCAGCTCCGG
CACagcccttcgtcctcttcggccACAGTTTTATGGGGGGTCTTCTAGCG
TTGGAGGTCGCGCGCGCTTTAATCGACATCTACCGCTTGCCGCCTCACAG
CATTGTCATCTCcgcttgcccctcccctcccgcctcgtcctccccctcgt
cctacTCGACCCGCCTCTCTTCGCTCCCCACGCCCCagctccttgccttc
cttgtTTCCACCGGCGCCCTGTCCGCCCACCTCGCGCAGAGCAAAGAGAC
GAGGacaaccctcctccccctcttcaaGGCTGACCTCGCTGCAGTCGACG
CCTAcatgctctccccctcttcctccctcccttcctccctccctctcccc
tgccctctcctggCCATCGCCTGTGAGGGCGACACTCTGGCAACCGCTGA
GAGCATGGAGGGCTGGCgctctttcacctcctcctccttcagcctctcct
ccctccctctctccctccctccttccacggaccgccaccaccacgtccgt
CCTGCCTCGGAGGCACTTTTTCGTGCCCTTTCCCTACACCTTCACCGTCA
ACCCATTCTCACACGCGACGTCCAGgtgcttcttccctcccttcctccct
ccctccctccttctttctctgcctccctctctccccatgTTCCATCCTGT
CCGTTTTCACTTCTGGCAGCAACAGTTTCGTGGCGTTGCTCTGTTCATCC
CTGTATAC back to top
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