EWM24488.1, cds6185 (CDS) Nannochloropsis gaditana

Overview
NameEWM24488.1
Unique Namecds6185
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:823371..824478 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24488.1
Productpyoverdine thioesterase component
Partialtrue
Orig transcript idgnl|cribi|Naga_100782g1.2122.mrna
GbkeyCDS
End range.
End range824478
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:823371..824478 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0016788hydrolase activity, acting on ester bonds
Vocabulary: Biological Process
TermDefinition
GO:0009058biosynthetic process
Vocabulary: INTERPRO
TermDefinition
IPR012223TEII
IPR001031Thioesterase
IPR029058AB_hydrolase
Homology
BLAST of EWM24488.1 vs. NCBI_GenBank
Match: gi|585105969|gb|EWM24488.1| (pyoverdine thioesterase component, partial [Nannochloropsis gaditana])

HSP 1 Score: 727.628 bits (1877), Expect = 0.000e+0
Identity = 369/369 (100.00%), Postives = 369/369 (100.00%), Query Frame = 0
Query:    1 MGCCGSRPSTASRCAAKNSTIPPSPVAPLQGEELRACFVTPPASATTNNLPSRFLLYRLPWEGTTSTIFDDWRQLPYVEVVTLVLPARLGKSITKHPKNVRVMANHLAHAISSSLNNKDAQKKGPGKERAPAPAQPFVLFGHSFMGGLLALEVARALIDIYRLPPHSIVISACPSPPASSSPSSYSTRLSSLPTPQLLAFLVSTGALSAHLAQSKETRTTLLPLFKADLAAVDAYMLSPSSSLPSSLPLPCPLLAIACEGDTLATAESMEGWRSFTSSSFSLSSLPLSLPPSTDRHHHVRPASEALFRALSLHLHRQPILTRDVQVLLPSLPPSLPPSFSASLSPHVPSCPFSLLAATVSWRCSVHPCI 369
            MGCCGSRPSTASRCAAKNSTIPPSPVAPLQGEELRACFVTPPASATTNNLPSRFLLYRLPWEGTTSTIFDDWRQLPYVEVVTLVLPARLGKSITKHPKNVRVMANHLAHAISSSLNNKDAQKKGPGKERAPAPAQPFVLFGHSFMGGLLALEVARALIDIYRLPPHSIVISACPSPPASSSPSSYSTRLSSLPTPQLLAFLVSTGALSAHLAQSKETRTTLLPLFKADLAAVDAYMLSPSSSLPSSLPLPCPLLAIACEGDTLATAESMEGWRSFTSSSFSLSSLPLSLPPSTDRHHHVRPASEALFRALSLHLHRQPILTRDVQVLLPSLPPSLPPSFSASLSPHVPSCPFSLLAATVSWRCSVHPCI
Sbjct:    1 MGCCGSRPSTASRCAAKNSTIPPSPVAPLQGEELRACFVTPPASATTNNLPSRFLLYRLPWEGTTSTIFDDWRQLPYVEVVTLVLPARLGKSITKHPKNVRVMANHLAHAISSSLNNKDAQKKGPGKERAPAPAQPFVLFGHSFMGGLLALEVARALIDIYRLPPHSIVISACPSPPASSSPSSYSTRLSSLPTPQLLAFLVSTGALSAHLAQSKETRTTLLPLFKADLAAVDAYMLSPSSSLPSSLPLPCPLLAIACEGDTLATAESMEGWRSFTSSSFSLSSLPLSLPPSTDRHHHVRPASEALFRALSLHLHRQPILTRDVQVLLPSLPPSLPPSFSASLSPHVPSCPFSLLAATVSWRCSVHPCI 369          
BLAST of EWM24488.1 vs. NCBI_GenBank
Match: gi|516192096|ref|WP_017603268.1| (thioesterase [Nocardiopsis alkaliphila])

HSP 1 Score: 91.2781 bits (225), Expect = 1.577e-17
Identity = 78/234 (33.33%), Postives = 108/234 (46.15%), Query Frame = 0
Query:   56 LYRLPWEGTTSTIFDDWRQL--PYVEVVTLVLPARLGKSITKHP-KNVRVMANHLAHAISSSLNNKDAQKKGPGKERAPAPAQPFVLFGHSFMGGLLALEVARALIDIYRLPPHSIVISACPSPPASSSPSSYSTRLSSLPTPQLLAFLVSTGALSAHLAQSKETRTTLLPLFKADLAAVDAYMLSPSSSLPSSLPLPCPLLAIACEGDTLATAESMEGWRSFTSSSFSLSSLP 286
            LY  P+ G T+  +  W       VEVV + LPAR G  +T+ P  ++   A+ +A AI S                + +P    +LFGHS MG +LA EVAR L D  R P   + +SA PSP           R+S LP  + L  L   GA    + ++ E    LLP+ +AD + ++ Y  S      S +PL CP+LA   + D   T E M GW   T + F    LP
Sbjct:   24 LYCFPFAGGTANFYAGWHDDLDSTVEVVPIQLPAR-GPRMTEPPVDDLATAADRIAEAIGSE---------------STSP----LLFGHS-MGAILAFEVARRLDDTDR-PVGFLFVSARPSPRLVRP----RNRVSHLPRAKFLRMLRDYGAAGEEILENDELVDLLLPMIRADFSLIERYRYS------SGVPLSCPILAWCGDKDPEVTPEEMTGWGQETIAGFEQFVLP 225          
BLAST of EWM24488.1 vs. NCBI_GenBank
Match: gi|1158515581|ref|WP_079047443.1| (hypothetical protein [Streptomyces kanasensis])

HSP 1 Score: 91.2781 bits (225), Expect = 2.659e-17
Identity = 70/234 (29.91%), Postives = 111/234 (47.44%), Query Frame = 0
Query:   56 LYRLPWEGTTSTIFDDW---RQLPYVEVVTLVLPARLGKSITKHPKNVRVMANHLAHAISSSLNNKDAQKKGPGKERAPAPAQPFVLFGHSFMGGLLALEVARALIDIYRLPPHSIVISACPSPPASSSPSSYSTRLSSLPTPQLLAFLVSTGALSAHLAQSKETRTTLLPLFKADLAAVDAYMLSPSSSLPSSLPLPCPLLAIACEGDTLATAESMEGWRSFTSSSFSLSSLP 286
            +Y LP  G ++  +  W   RQ+P ++ V + LP R  +   + P ++      +   + S L  +      P +E       PF+LFGHS MG  +A E  R L+   R  P ++V+S C  PP S        R       +LL  +V  G   A + + +E    LLP+ +ADL  +  YM +   ++     LPCP++A+  +GD L+  E ++GWRS T+  F    LP
Sbjct:   46 VYCLPHAGGSAGSYLAWARSRQVPGLDFVPVELPGRGTRMAEQLPASM----EEVVDGVLSVLEAR------PERE-------PFLLFGHS-MGAQIAYETTRRLVAGGRPLPRTLVVSGC-RPPGSPVAMPLHDRDDD----ELLKGIVELGGTPAEILEHRELLAMLLPVMRADLGLLARYMEAVRPTV-----LPCPVVALGGDGDRLSGPEWIDGWRSVTAGGFRRRILP 251          
BLAST of EWM24488.1 vs. NCBI_GenBank
Match: gi|971325144|gb|KUH35992.1| (hypothetical protein ATE80_26045 [Streptomyces kanasensis])

HSP 1 Score: 90.1225 bits (222), Expect = 3.512e-17
Identity = 70/234 (29.91%), Postives = 111/234 (47.44%), Query Frame = 0
Query:   56 LYRLPWEGTTSTIFDDW---RQLPYVEVVTLVLPARLGKSITKHPKNVRVMANHLAHAISSSLNNKDAQKKGPGKERAPAPAQPFVLFGHSFMGGLLALEVARALIDIYRLPPHSIVISACPSPPASSSPSSYSTRLSSLPTPQLLAFLVSTGALSAHLAQSKETRTTLLPLFKADLAAVDAYMLSPSSSLPSSLPLPCPLLAIACEGDTLATAESMEGWRSFTSSSFSLSSLP 286
            +Y LP  G ++  +  W   RQ+P ++ V + LP R  +   + P ++      +   + S L  +      P +E       PF+LFGHS MG  +A E  R L+   R  P ++V+S C  PP S        R       +LL  +V  G   A + + +E    LLP+ +ADL  +  YM +   ++     LPCP++A+  +GD L+  E ++GWRS T+  F    LP
Sbjct:   24 VYCLPHAGGSAGSYLAWARSRQVPGLDFVPVELPGRGTRMAEQLPASM----EEVVDGVLSVLEAR------PERE-------PFLLFGHS-MGAQIAYETTRRLVAGGRPLPRTLVVSGC-RPPGSPVAMPLHDRDDD----ELLKGIVELGGTPAEILEHRELLAMLLPVMRADLGLLARYMEAVRPTV-----LPCPVVALGGDGDRLSGPEWIDGWRSVTAGGFRRRILP 229          
BLAST of EWM24488.1 vs. NCBI_GenBank
Match: gi|655268779|ref|WP_028678713.1| (thioesterase [Salinispora arenicola])

HSP 1 Score: 89.3521 bits (220), Expect = 8.137e-17
Identity = 69/230 (30.00%), Postives = 102/230 (44.35%), Query Frame = 0
Query:   59 LPWEGTTSTIFDDWRQL--PYVEVVTLVLPARLGKSITKHPKNVRVMANHLAHAISSSLNNKDAQKKGPGKERAPAPAQPFVLFGHSFMGGLLALEVARALIDIYRLPPHSIVISACPSPPASSSPSSYSTRLSSLPTPQLLAFLVSTGALSAHLAQSKETRTTLLPLFKADLAAVDAYMLSPSSSLPSSLPLPCPLLAIACEGDTLATAESMEGWRSFTSSSFSLSSLP 286
             P  G  +T + +W  L  P +E+V + LP R  +   +    V  + N L  A+   L+                  +PF  +GHS  G  LA E+A+AL    R  P  + +SA P+P  +        +L  LP  +  A LV  G L   +A  +    +LLP  +AD    + +  +P SS+       CP+ A+A E D  A  E ME WRSFT++ F L   P
Sbjct:   30 FPHAGAGATTYAEWGSLLPPEIELVAVQLPGRQNRIAEEPFTEVAPLVNVLVQALRPVLD------------------RPFAFYGHS-CGAALAYEMAQALQARGRSVPERLFLSAQPAPDVTVQ------QLHGLPDDEFRAELVRLGGLEEEVATDESLMASLLPTLRADFRLWERHRPAPGSSVH------CPITALAGESDLRAPMEDMERWRSFTTAEFDLQRYP 228          
BLAST of EWM24488.1 vs. NCBI_GenBank
Match: gi|1181239025|ref|WP_084556101.1| (hypothetical protein [Couchioplanes caeruleus])

HSP 1 Score: 87.4261 bits (215), Expect = 3.214e-16
Identity = 77/262 (29.39%), Postives = 116/262 (44.27%), Query Frame = 0
Query:   27 APLQGEELRACFVTPPASATTNNLPSRFLLYRLPWEGTTSTIFDDWRQLPYVEVVTLVLPARLGKSITKHPKNVRVMANHLAHAISSSLNNKDAQKKGPGKERAPAPAQPFVLFGHSFMGGLLALEVARALIDIYRLPPHSIVISACPSP--PASSSPSSYSTRLSSLPTPQLLAFLVSTGALSAHLAQSKETRTTLLPLFKADLAAVDAYMLSPSSSLPSSLPLPCPLLAIACEGDTLATAESMEGWRSFTSSSFSLSSLP 286
            AP++   +RA  +  P++  T ++      YR        ++ D  R  P VEV  + LP R  +     P+++  +   LA AI  ++                    PF + GHS MG L+A EVAR L D+   PP  +++SA P+P  P  S+ +   T    LP  +LL +L + G + A     +E    LLP  + DL A ++Y   P+       PLP P+ A A   D L   E +  W   T   F L+ LP
Sbjct:   13 APMRAANVRARLIAVPSAGGTPSM------YR--------SLAD--RLAPDVEVWAVQLPGRERRFGEPVPESLAEIVPALATAIGDTIE------------------PPFAILGHS-MGALIAYEVARRLCDLGEPPPQRLLVSAFPAPHLPLWSAQAPRHT----LPDEELLRWLAAAGGMPAEALADRELMALLLPSIRGDLRACESYAYRPAP------PLPMPVTAFAGSDDALVPVEHVAAWDRHTDGDFDLNVLP 229          
BLAST of EWM24488.1 vs. NCBI_GenBank
Match: gi|1028182172|ref|WP_063928484.1| (thioesterase [Methylobacterium aquaticum])

HSP 1 Score: 87.4261 bits (215), Expect = 4.231e-16
Identity = 71/233 (30.47%), Postives = 106/233 (45.49%), Query Frame = 0
Query:   56 LYRLPWEGTTSTIFDDWRQLPYVEVVTLVLPARLGKSITKHPKNVRVMANHLAHAISSSLNNKDAQKKGPGKERAPAPAQPFVLFGHSFMGGLLALEVARALIDIYRLPPHSIVISACPSPPASSSPSSYSTRLSSLP--TPQLLAFLVSTGALSAHLAQSKETRTTLLPLFKADLAAVDAYMLSPSSSLPSSLPLPCPLLAIACEGDTLATAESMEGWRSFTSSSFSLSSLP 286
            L+ +P+ G ++ I+  W  L  V     + P  L    T+  +   V  +HLA A++  L +           R   PA P+ LFGHS +G L+A E+A ALI     PP  +V S       +S+P+    R    P    +L+A L + G     +  S E    +LP+ +AD     AY   P        PLPCP+  +  E D +   E++EGWR  T++ F LS  P
Sbjct:   10 LFCIPYSGASAAIYARWSFL--VPDAIAIHPVELPGRGTRADEPFAVDPHHLAEALAKELADL---------HRLADPAVPYALFGHS-LGALVAYELAHALIRRGAAPPRLLVASG------TSAPAMRDDRAWRRPRSDTELIADLRAMGGTPEEVIASPELMEMVLPVLRADFLMCGAYAFRPRP------PLPCPIRVLGGEQDDV-PGEALEGWRRETATGFGLSLFP 217          
BLAST of EWM24488.1 vs. NCBI_GenBank
Match: gi|1052288395|emb|SCG16909.1| (Surfactin synthase thioesterase subunit [Micromonospora echinofusca])

HSP 1 Score: 86.6557 bits (213), Expect = 5.570e-16
Identity = 71/232 (30.60%), Postives = 112/232 (48.28%), Query Frame = 0
Query:   56 LYRLPWEGTTSTIFDDWRQ--LPYVEVVTLVLPARLGKSITKHPKNVRVMANHLAHAISSSLNNKDAQKKGPGKERAPAPAQPFVLFGHSFMGGLLALEVARALIDIYRLPPHSIVISACPSPPASSSPSSYSTRLSSLPTPQLLAFLVSTGALSAHLAQSKETRTTLLPLFKADLAAVDAYMLSPSSSLPSSLPLPCPLLAIACEGDTLATAESMEGWRSFTSSSFSLSSL 285
            L+ LP+ G  +++F  W+    P VEV+ + LP R  + I+++P      A  +A+AI+  +                    P+ ++GHS MGG +  EV R L    R  P  + +    +P  S+ PS +   LS +   +LL  L + G L A L +  E    LLPL +AD A VD Y  +P +      PLP P++A A  GD   + E  +GWR  +++ F+L  +
Sbjct:   17 LFCLPYAGGGASVFRRWQDGLAPDVEVLPVQLPGRENR-ISENPV---FRAADVAYAIAERIRG------------------PYAIYGHS-MGGRVGFEVVRELRRAGRPLPLRLYVGGARAPHVSA-PSHFDG-LSRVADDELLRRLEAGGGLPAGLLEYPELVELLLPLLRADFAQVDDYRYTPEA------PLPMPIVAFAGRGDDTVSREHSDGWREHSAAGFTLREI 217          
BLAST of EWM24488.1 vs. NCBI_GenBank
Match: gi|1104182184|gb|OJF15783.1| (Thioesterase [Couchioplanes caeruleus subsp. caeruleus])

HSP 1 Score: 86.2705 bits (212), Expect = 7.423e-16
Identity = 73/238 (30.67%), Postives = 106/238 (44.54%), Query Frame = 0
Query:   53 RFLLYRLPWEGTTSTIFDDW--RQLPYVEVVTLVLPARLGKSITKHPKNVRVMANHLAHAISSSLNNKDAQKKGPGKERAPAPAQPFVLFGHSFMGGLLALEVARALIDIYRLPPHSIVISACPSP--PASSSPSSYSTRLSSLPTPQLLAFLVSTGALSAHLAQSKETRTTLLPLFKADLAAVDAYMLSPSSSLPSSLPLPCPLLAIACEGDTLATAESMEGWRSFTSSSFSLSSLP 286
            R  L  +P  G T +++     R  P VEV  + LP R  +     P+++  +   LA AI  ++                    PF + GHS MG L+A EVAR L D+   PP  +++SA P+P  P  S+ +   T    LP  +LL +L + G + A     +E    LLP  + DL A ++Y   P+       PLP P+ A A   D L   E +  W   T   F L+ LP
Sbjct:    7 RARLIAVPSAGGTPSMYRSLADRLAPDVEVWAVQLPGRERRFGEPVPESLAEIVPALATAIGDTIE------------------PPFAILGHS-MGALIAYEVARRLCDLGEPPPQRLLVSAFPAPHLPLWSAQAPRHT----LPDEELLRWLAAAGGMPAEALADRELMALLLPSIRGDLRACESYAYRPAP------PLPMPVTAFAGSDDALVPVEHVAAWDRHTDGDFDLNVLP 215          
BLAST of EWM24488.1 vs. NCBI_GenBank
Match: gi|926351411|ref|WP_053683050.1| (thioesterase [Streptomyces sp. WM4235] >gi|925406846|gb|KOU41103.1| gramicidin biosynthesis protein GrsT [Streptomyces sp. WM4235])

HSP 1 Score: 85.5001 bits (210), Expect = 1.885e-15
Identity = 67/237 (28.27%), Postives = 102/237 (43.04%), Query Frame = 0
Query:   52 SRFLLYRLPWEGTTSTIFDDWRQL--PYVEVVTLVLPARLGKSITKHPKNVRVMANHLAHAISSSLNNKDAQKKGPGKERAPAPAQPFVLFGHSFMGGLLALEVARALIDIYRLPPHSIVISACPSPPASSSPSSYSTRLSSLPTPQLLAFLVSTGALSAHLAQSKETRTTLLPLFKADLAAVDAYMLSPSSSLPSSLPLPCPLLAIACEGDTLATAESMEGWRSFTSSSFSLSSLP 286
            SR  L   P  G  +T + DW  L  P +E+V + LP R  + + +    V  +   L HA+   L                     F  FGHS  G  LA E+A+AL       P ++ +SA P+P A+     Y      LP  +    +   G +   +A  +    +LLP+ +AD    + +  +P +      PL CP+  IA +GD  A  ES+EGWR  T+ +F +   P
Sbjct:   23 SRHRLICFPHAGAGATAYADWVPLLPPDIELVAVQLPGRQNRIVEEPFTEVAPLVQTLVHALRPVLGGS------------------FSFFGHS-CGAALAFELAKALRARGGPVPRALFLSAQPAPGATGVRPLYD-----LPDEEFHQAMTELGGIDEEIAADEFVMASLLPVLRADFTLWERHRTAPDA------PLDCPITVIAGDGDPRAPRESVEGWRDQTTGAFEVHFRP 229          
The following BLAST results are available for this feature:
BLAST of EWM24488.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105969|gb|EWM24488.1|0.000e+0100.00pyoverdine thioesterase component, partial [Nannoc... [more]
gi|516192096|ref|WP_017603268.1|1.577e-1733.33thioesterase [Nocardiopsis alkaliphila][more]
gi|1158515581|ref|WP_079047443.1|2.659e-1729.91hypothetical protein [Streptomyces kanasensis][more]
gi|971325144|gb|KUH35992.1|3.512e-1729.91hypothetical protein ATE80_26045 [Streptomyces kan... [more]
gi|655268779|ref|WP_028678713.1|8.137e-1730.00thioesterase [Salinispora arenicola][more]
gi|1181239025|ref|WP_084556101.1|3.214e-1629.39hypothetical protein [Couchioplanes caeruleus][more]
gi|1028182172|ref|WP_063928484.1|4.231e-1630.47thioesterase [Methylobacterium aquaticum][more]
gi|1052288395|emb|SCG16909.1|5.570e-1630.60Surfactin synthase thioesterase subunit [Micromono... [more]
gi|1104182184|gb|OJF15783.1|7.423e-1630.67Thioesterase [Couchioplanes caeruleus subsp. caeru... [more]
gi|926351411|ref|WP_053683050.1|1.885e-1528.27thioesterase [Streptomyces sp. WM4235] >gi|9254068... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6200rna6200Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications