EWM24520.1, cds6153 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24520.1 vs. NCBI_GenBank
Match: gi|585106024|gb|EWM24520.1| (PUB domain protein [Nannochloropsis gaditana]) HSP 1 Score: 705.286 bits (1819), Expect = 0.000e+0 Identity = 355/355 (100.00%), Postives = 355/355 (100.00%), Query Frame = 0 Query: 1 MDKADGDDGKIVIKVKTLKGGGENSVSLKVVPNMTIGELKAQIAASALEVPCESQRLVFQGCMLKDDRKTLAEHKLTEGSCVLLSVLSPSVSNRGSSASPSIASPASSLPSNPSPNNPTSLPSPVIPSPSSTASPAVVILRAAITGVRSSNSPEVGTLALQTLSTMLGNIIANPMEEKFRQFKKSNPAFLRRVGSASGTGAILRAAGFQESAQTWVLQPSEQGWGVLCTAKGEIDAAIAALPPSLPPPGPGASGRQPAMAGLGGGLEGGGGGGRGARMDPTMLATLMGMMQSNPALRAQALRLFGASDGPGQARSVEALLNNPALVNQLAQQYEVREVEGGGSRRGRKRWREGCG 355 MDKADGDDGKIVIKVKTLKGGGENSVSLKVVPNMTIGELKAQIAASALEVPCESQRLVFQGCMLKDDRKTLAEHKLTEGSCVLLSVLSPSVSNRGSSASPSIASPASSLPSNPSPNNPTSLPSPVIPSPSSTASPAVVILRAAITGVRSSNSPEVGTLALQTLSTMLGNIIANPMEEKFRQFKKSNPAFLRRVGSASGTGAILRAAGFQESAQTWVLQPSEQGWGVLCTAKGEIDAAIAALPPSLPPPGPGASGRQPAMAGLGGGLEGGGGGGRGARMDPTMLATLMGMMQSNPALRAQALRLFGASDGPGQARSVEALLNNPALVNQLAQQYEVREVEGGGSRRGRKRWREGCG Sbjct: 1 MDKADGDDGKIVIKVKTLKGGGENSVSLKVVPNMTIGELKAQIAASALEVPCESQRLVFQGCMLKDDRKTLAEHKLTEGSCVLLSVLSPSVSNRGSSASPSIASPASSLPSNPSPNNPTSLPSPVIPSPSSTASPAVVILRAAITGVRSSNSPEVGTLALQTLSTMLGNIIANPMEEKFRQFKKSNPAFLRRVGSASGTGAILRAAGFQESAQTWVLQPSEQGWGVLCTAKGEIDAAIAALPPSLPPPGPGASGRQPAMAGLGGGLEGGGGGGRGARMDPTMLATLMGMMQSNPALRAQALRLFGASDGPGQARSVEALLNNPALVNQLAQQYEVREVEGGGSRRGRKRWREGCG 355
BLAST of EWM24520.1 vs. NCBI_GenBank
Match: gi|1210531399|dbj|GAX09755.1| (hypothetical protein FisN_11Lh277 [Fistulifera solaris]) HSP 1 Score: 112.079 bits (279), Expect = 3.788e-24 Identity = 96/340 (28.24%), Postives = 163/340 (47.94%), Query Frame = 0 Query: 11 IVIKVKTLKGGGENSVSLKVVPNMTIGELKAQIAASALEVPCESQRLVFQGCMLKDDRKTLA--EHKLTEGSCV-LLSVLSPSVSNRGSSASPSIASPASSLPSNPSPNNP----TSLPSPVIPSPSSTASPAVVILRAAITGVRSSNSPEVGTLALQTLSTMLGNIIANPMEEKFRQFKKSNPAFLRRVGSASGTGAILRAAG----FQESAQTWVLQPSEQGWGVLCTAKGEIDAAI-------AALPPSLPPPGPGASGRQPA-MAGLGGGLEGGGGGGRGARMDPTMLATLMGMMQSNPALRAQALRLFGASDGPGQARSVEALLNNPALVNQLAQ 331 + I++ G V L + P++T +L+ Q+A A ++P E+ +L+F+G ++ ++ LA E KL +GS + + +P+ S +AS A+ ++ + + + PS + P STA P L+AA+ +R+ SP A+QTL ++ NI+ PMEEK+R KKSN AF R++G G +++AAG F++ + + LQ S + W L G + A + AA PS PP G+S P + + DP + M++++P R + P +E +LNNPAL+ Q++Q Sbjct: 4 LTIQLTITGTDGAPKVPLTIEPSITSTQLRQQVA-EATKIPLETLKLIFRGRIIANNDTQLAVSEFKLEDGSVLHCMGKPAPAASTAEGAASSQTATTSNVASAAAALPASRLSFNAFPSASVSVPDSTADP----LQAALATLRAGLSPADYLTAVQTLEKIVSNIVTQPMEEKYRSLKKSNVAFQRKLGGKRGGDELMKAAGFIVEFRDGMEYYALQASAEAWPKLVATHGTLQAVVRQAQALSAAPTPSPVPPTMGSSPNLPFNFDQIPSDFMSNPAALQAMLQDP----MVQNMIRNDPRFR----------NNP----YMEQMLNNPALLQQVSQ 320
BLAST of EWM24520.1 vs. NCBI_GenBank
Match: gi|1210526553|dbj|GAX14734.1| (hypothetical protein FisN_11Hh277 [Fistulifera solaris]) HSP 1 Score: 105.145 bits (261), Expect = 9.494e-22 Identity = 103/344 (29.94%), Postives = 167/344 (48.55%), Query Frame = 0 Query: 11 IVIKVKTLKGGGENSVSLKVVPNMTIGELKAQIAASALEVPCESQRLVFQGCMLKDDRKTLA--EHKLTEGSCVLLSVLSPSVSNRGSSASPSIASPASSLPSNPSPNNP---------TSLPSPVIPSPSSTASPAVVILRAAITGVRSSNSPEVGTLALQTLSTMLGNIIANPMEEKFRQFKKSNPAFLRRVGSASGTGAILRAAGF----QESAQTWVLQPSEQGWGVLCTAKGEIDAAI-------AALPPSLPPPGPGASGRQPA-MAGLGGGLEGGGGGGRGARMDPTMLATLMGMMQSNPALRAQALRLFGASDGPGQARSVEALLNNPALVNQLAQ 331 + + + G V L + P++T +L+ Q AA A ++P ES +L+F+G ++ ++ LA E KL +GS VL + P+ + SSA ++S A++ +N + + + PS + +P+ TA P L+AA+ +R+ S A+QTL +L NI+ PMEEK+R KKSN AF R++G G +++AAGF +E + + LQ S + W L G + A + AA P PP G+S P + +G DP + M++++P LR D P +E +LNNPAL+ Q++Q Sbjct: 4 LTVHLTITGADGAPKVPLTIEPSVTSTQLRQQ-AAEATKIPIESLKLIFRGRLISNNDTQLAVSEFKLEDGS-VLHCMGKPAPA--ASSAEGGVSSQAATTNNNLASASAAQPASRLSFNAFPSASVSAPAPTADP----LQAALATLRAGLSQADYLTAVQTLEKILSNIVTQPMEEKYRSLKKSNAAFQRKLGGKRGGDELMKAAGFIVEIREGVEYYALQASAEAWPKLVATHGILQAVVRQAQAISAAPAPPPVPPTIGSSSNMPFNFDQIPSDFMSNPVALQGMLQDP----MVQNMIRNDPRLR----------DSP----YMEQMLNNPALLRQVSQ 321
BLAST of EWM24520.1 vs. NCBI_GenBank
Match: gi|223999061|ref|XP_002289203.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220974411|gb|EED92740.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 93.9745 bits (232), Expect = 1.305e-17 Identity = 96/324 (29.63%), Postives = 157/324 (48.46%), Query Frame = 0 Query: 42 QIAASALEVPCESQRLVFQGCML--KDDRKTLAEHKLTEGSCVLLSVLSPSVSNRGSSASPSIASPASSLPSNPSPNNPTSLPSPVIPSPSSTASPAVVILRAAITGVRSSNSPEVGTLALQTLSTMLGNIIANPMEEKFRQFKKSNPAFLRRVGSASGTGAILRAAGF-QES---AQTWVLQPSEQGWGVLCTAKGEID------AAIAALPPSLPPPGPGAS-----------------GRQPAMAGLGGGLEGGGGGGRGARM-----DPTMLATLMGMMQSNPALRAQALRLFGASDGPGQARSVEALLNNPALVNQLAQ 331 ++A++A +P +S +L+F+G ++ K + E+KL + S + + P + + A+ + ++ S N+ T P+ S+T+SP L +A+ +R++N+ E AL T +L NII++PMEEK+R KKSNPAF +R+G SG A+L A+GF ES +++VL+PS W L A EI A +A PS + G P+ A +GG L GG G A M +P ML +M SNP ++ ++ P + +E L +NP ++ Q++Q Sbjct: 40 RLASAATNIPLDSLKLIFRGRVIGEKSEGDVGLEYKLEDESVIHVMGKPPVAAAGSGGGGAAAAAGTNIAGASVSMNSST-------PATSNTSSP----LASAMLTLRTNNNSETYRTALATADKLLSNIISHPMEEKYRSIKKSNPAFHKRLGGVSGGEALLLASGFVVESGGGVESYVLRPSADAWPRLVAAGEEIQRVLTEANATSASSPSATYDSNNNNNAATSGGGAGGMSNLFPGGIPSNA-MGGSL---GGPGMEAAMQSMLSNPQMLQNMM----SNPMVQQMMRNDPRFANNPMLQQQIETLASNPQMIQQMSQ 344
BLAST of EWM24520.1 vs. NCBI_GenBank
Match: gi|1173956489|gb|OQS03259.1| (hypothetical protein THRCLA_04443 [Thraustotheca clavata]) HSP 1 Score: 83.9593 bits (206), Expect = 7.557e-14 Identity = 98/319 (30.72%), Postives = 145/319 (45.45%), Query Frame = 0 Query: 20 GGGENSVSLKVVPNMTIGELKAQIAASALEVPCESQRLVFQGCMLKDDRKTLAEHKLTEGSCVLLSVLSPSVSNRGSSASPSIASPASSLPSNPSPNNPTSLPSPVIPSPSSTASPAVVILRAAITGVRSSNSPEVGTLALQTLSTMLGNIIANPMEEKFRQFKKSNPAFLRRVGSASGTGAILRAAGFQESAQT--WVLQPSEQGWGVLCTAKGEIDAAIAA----LPPSLPP-PGPGASGRQPAMAGLGGGLEGGGGGGRGARMDPTMLATLMGMMQSNPALRAQALRLFGASDGPGQARSVEALLNNPALVNQLAQ 331 G + V + + T+ ELK ++ L P E+QRL+FQG +L DD+ TL + L V L++ + +++ ++ SP+ S + PS PS V P+ SS P + A + ++ + + G AL T+ M NI+ +P EEK+R+ + SN A R+V A ++A GF + VL PS W L AK IDAA A PS P PG Q + L + + DP + M QSNP LR QAL S+ +S+ A+ NNP + QL Q Sbjct: 1065 NGATHRVDIDIA-TATVHELKLKVQ-ELLHCPPEAQRLIFQGRVL-DDKATLTSYGLNSELIVHLAINTKLMASTPAAPSPAAPSIPT--PSTPS----------VQPASSSQQHP----IAAHLPLLKQTTA---GITALTTIKKMAENIVNHPTEEKYRKIRLSNEALKRKVLDVPHGLACVQAMGFASGVEEGFLVLVPSAANWDQLIAAKRLIDAASIAPASPFTPSFTPSSAPGIDPLQNMQSMLQNPM-----FANMLQQDP----NIQQMAQSNPMLR-QAL-----SNPALLQQSLSAIQNNPMMREQLNQ 1346
BLAST of EWM24520.1 vs. NCBI_GenBank
Match: gi|299469629|emb|CBN76483.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 81.2629 bits (199), Expect = 2.816e-13 Identity = 69/201 (34.33%), Postives = 100/201 (49.75%), Query Frame = 0 Query: 160 LQTLSTMLGNIIANPMEEKFRQFKKSNPAFLRRVGSASGTGAILRAAGFQE---SAQTWVLQPSEQGWGVLCTAKGEIDAAIAALPPS-----------------LPPPG--PGA-------SGRQPAMAGLGGGLEGGGGGGRGARM--DPTMLATLM------GMMQSNPALRAQALRLFGASDGPGQARSVEALLNNP 323 L TL+ ++ NI A+P EEK+R+ K++N F R+VG+ G A +RA GF E + ++W+L PSE W VL + +I A+A LP + LPPPG P A G P MA + ARM +P ++ +M MM+SNP + A A++ A G G A++ EA+ NNP Sbjct: 163 LTTLTKVIDNIKAHPTEEKYRKIKRANAGFSRKVGAVPGGEACMRALGFVEHGDAQESWLLAPSEAAWNVLTAGRVDIQRALATLPGAPAAAGASTGGFAGGLGVLPPPGAFPQAGFGGGTGGGGMPDMATM-------------ARMAQNPAVMQGMMNDPSVQAMMRSNPQM-AAAMQSVMARPG-GLAQAFEAIQNNP 348
BLAST of EWM24520.1 vs. NCBI_GenBank
Match: gi|970650813|gb|KUF89757.1| (Ubiquilin-1 [Phytophthora nicotianae]) HSP 1 Score: 80.4925 bits (197), Expect = 3.499e-13 Identity = 89/329 (27.05%), Postives = 145/329 (44.07%), Query Frame = 0 Query: 13 IKVKTLKGGGENSVSLKVVPNMTIGELKAQIAA-SALEVPCESQRLVFQGCMLKDDRKTLAEHKLTEGSCVLLSVLSPSVSNRGSSASPSIASPASSLPSNPSPNNPTSLPSPVIPSPSSTASPAVVILRAAITGVRSSNSPEVGTLALQTLSTMLGNIIANPMEEKFRQFKKSNPAFLRRVGSASGTGAILRAAGFQESAQ--TWVLQPSEQGWGVLCTAKGEIDAAIAALPPSLPPPGPGASGRQPAMAGLGGGLEGGGGGGRGARMDPTMLATLMG------MMQSNPALRAQALRLFGASDGPG-QARSVEALLNNPALVNQLAQ 331 + +K + G E+ + + ++ LK QI +A P +QRL+FQG +L+DD+K LA++ + G C L +SP + A+ + P+P PT L R + +R S E A++TL + NI+ +P EEK+R+ + N A ++ + ++ GFQ+ Q VL P+ + W L K +D+ + L + AS +M G GG + +P ML ++ M Q NP L AQAL+ P A+S++AL NPA+V Q++Q Sbjct: 4 LTIKVVSGTSEDLHVHVDLASASVLTLKQQIEQQNAQRFPVAAQRLIFQGQILQDDKK-LADYHVAAG-CALHLTISPGAVAAANRAATT----------GPAP--PTQL-------------------RTFLQQMRDYESHEQYATAVRTLQKICANIVGHPNEEKYRKLRVDNAALKAKLFDRTRGQDSVKLLGFQDGVQAGHLVLVPTPEKWENLVACKAVVDSIVTTLGGA---APAAASPFGASMGGFGGLGGDFASQAQTLLQNPAMLQSMANNPMVQQMAQQNPML-AQALQ------NPALLAQSMQALQQNPAMVQQMSQ 289
BLAST of EWM24520.1 vs. NCBI_GenBank
Match: gi|675170267|ref|XP_008894018.1| (hypothetical protein PPTG_03091 [Phytophthora parasitica INRA-310] >gi|568105354|gb|ETN19990.1| hypothetical protein PPTG_03091 [Phytophthora parasitica INRA-310]) HSP 1 Score: 80.4925 bits (197), Expect = 3.638e-13 Identity = 89/329 (27.05%), Postives = 145/329 (44.07%), Query Frame = 0 Query: 13 IKVKTLKGGGENSVSLKVVPNMTIGELKAQIAA-SALEVPCESQRLVFQGCMLKDDRKTLAEHKLTEGSCVLLSVLSPSVSNRGSSASPSIASPASSLPSNPSPNNPTSLPSPVIPSPSSTASPAVVILRAAITGVRSSNSPEVGTLALQTLSTMLGNIIANPMEEKFRQFKKSNPAFLRRVGSASGTGAILRAAGFQESAQT--WVLQPSEQGWGVLCTAKGEIDAAIAALPPSLPPPGPGASGRQPAMAGLGGGLEGGGGGGRGARMDPTMLATLMG------MMQSNPALRAQALRLFGASDGPG-QARSVEALLNNPALVNQLAQ 331 + +K + G E+ + + ++ LK QI +A P +QRL+FQG +L+DD+K LA++ + G C L +SP + A+ + P+P PT L R + +R S E A++TL + NI+ +P EEK+R+ + N A ++ + ++ GFQ+ Q VL P+ + W L K +D+ + L + AS +M G GG + +P ML ++ M Q NP L AQAL+ P A+S++AL NPA+V Q++Q Sbjct: 4 LTIKVVSGTSEDLHVHVDLASASVLTLKQQIEQQNAQRFPVAAQRLIFQGQILQDDKK-LADYHVAAG-CALHLTISPGAVAAANRAATT----------GPAP--PTQL-------------------RTFLQQMRDYESHEQYATAVRTLQKICANIVGHPNEEKYRKLRVDNAALKAKLFDRTRGQDSVKLLGFQDGVQAGHLVLVPTPEKWENLVACKAVVDSIVTTLGGA---APAAASPFGASMGGFGGLGGDFASQAQTLLQNPAMLQSMANNPMVQQMAQQNPML-AQALQ------NPALLAQSMQALQQNPAMVQQMSQ 289
BLAST of EWM24520.1 vs. NCBI_GenBank
Match: gi|301104561|ref|XP_002901365.1| (ubiquitin family protein, putative [Phytophthora infestans T30-4] >gi|262100840|gb|EEY58892.1| ubiquitin family protein, putative [Phytophthora infestans T30-4]) HSP 1 Score: 79.337 bits (194), Expect = 8.524e-13 Identity = 81/322 (25.16%), Postives = 138/322 (42.86%), Query Frame = 0 Query: 13 IKVKTLKGGGENSVSLKVVPNMTIGELKAQIAA-SALEVPCESQRLVFQGCMLKDDRKTLAEHKLTEGSCVLLSVLSPSVSNRGSSASPSIASPASSLPSNPSPNNPTSLPSPVIPSPSSTASPAVVILRAAITGVRSSNSPEVGTLALQTLSTMLGNIIANPMEEKFRQFKKSNPAFLRRVGSASGTGAILRAAGFQESAQT--WVLQPSEQGWGVLCTAKGEIDAAIAALPPSLPPPGPGASGRQPAMAGLGGGLEGGGGGGRGARMDPTMLATL------MGMMQSNPALRAQALRLFGASDGPG-QARSVEALLNNPA 324 + +K + G EN + + ++ LK QI +A P +QRL+FQG +L+DD K L ++ ++ G C L ++P + + +A P+ LR + +R + S + A +TL + NI+ +P E+K+R+ + N A ++ + ++ GFQ+ Q VL P+ + W +L K +D+ + + P +S P+M GLGG + +P ML ++ M Q NP L AQAL+ P A+S++AL NPA Sbjct: 5 LTIKVVSGTSENLHVRVDLASASVLTLKQQIEQQNAQRFPISAQRLIFQGQILQDD-KMLTDYHVSAG-CALHLTITPGAVAAANRQAAGLAPPSQ--------------------------------LRTFLQQMRDNESHDQYATAARTLQKICANIVGHPNEDKYRKLRVDNAALKAKLFDRTRGQDSVKLLGFQDGVQAGHLVLTPTPEKWEILVACKAVVDSVVTS--LGGAAPAAASSFGAPSMGGLGGDF---ASQAQTLLQNPAMLQSMATNPMVQQMAQQNPML-AQALQ------NPALLAQSMQALQQNPA 280
BLAST of EWM24520.1 vs. NCBI_GenBank
Match: gi|1072228005|gb|OEU12743.1| (hypothetical protein FRACYDRAFT_243999 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 77.7962 bits (190), Expect = 3.737e-12 Identity = 74/249 (29.72%), Postives = 107/249 (42.97%), Query Frame = 0 Query: 34 MTIGELKAQIAASALEVPCESQRLVFQGCMLKDD----RKTLAEHKLTEGSCVLLSVLSPSV---------------------------------SNRGSSASPSIASPASSLPSNPSPNNPTSLPSPVIPSPSSTASPAVVIL-----RAAITGVRSSNSPEVGTLALQTLSTMLGNIIANPMEEKFRQFKKSNPAFLRRVGSASGTGAILRAAGF------QESAQTWVLQPSEQGWGVLCTAKGEI 234 MT +L+ Q++ + ++P RL+F+G M+KDD L E+KL E VL + P V SNR + P ++ P S S S P SLP I +P+ S V L + A+ +R +N P + + TL +L NII +PMEEK+RQ KK N AF +R+G G + A GF S + + LQ + Q W L +I Sbjct: 27 MTPTQLRTQVS-TVTKIPITELRLIFRGRMIKDDDTLEHSVLTEYKL-ENESVLHCMGKPVVVAVAAAVVDSSDNNTVSGTTTSTSSSSAGATVDSNR--TVVPPLSRPMGSRSSAASI--PRSLP---IMNPNGDVSSNVNNLDNDPLKKALVRLRQNNPPSIYATGVTTLERVLKNIIDHPMEEKYRQVKKQNAAFNKRLGGLIGGHDCMLATGFTVDNDTSSSEEVYKLQATAQKWTYLTEKAQQI 266 The following BLAST results are available for this feature:
BLAST of EWM24520.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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