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Properties
| Property Name | Value |
|---|
| Product | PUB domain protein |
| Orig transcript id | gnl|cribi|Naga_100447g1.3129.mrna |
| Orig protein id | gnl|cribi|Naga_100447g1.3129 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002467.1 | supercontig | CM002467.1:755032..757910 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6168 ID=rna6168|Name=rna6168|organism=Nannochloropsis gaditana|type=mRNA|length=1088bp
GACCATGCACTCTCAAGGCCAACAACCCCATCCCCACGTGGGAATACCGG
GAGGAACTGCTGGACTCTCCCAAGGTCCCAGGCCCGCTCCTCCAACAGCA
CAGGCTTCCTCCACCACTGGGGGTATACCCCCTGGGGCGGGAGGGCTTGA
CTTCTCGGCCTTGCTGAATCAGATGGGGGGAGGGGGAGGGGGAGGGGGAG
GGGGAGGGACCAGTGGAAGGGGGTTTTCTCCTCCGCAAGCGGAGGCCGAG
CTGACGGAGGACGAATTGGTGCAGCAGGCGATTGAAAGGTCGCTGAGAGA
GACGTGAAAAAAAGGCGAAGAGGCGGGGAGGGAAAGGGTCGGCAAGGGTC
TGGCCCCGTCAGCCGTGAAGTGGCATCGTCAGAGTGGTGAAGAAAATGTT
GAACGTCCATCATGAACATAAGTCAAGCGCGTTTCTCGCATCTCCATCCT
GGAGAGAACCGATACCTTTGCATGGCCCGTATAATTTAAGGCACGATTTG
GAGGAAAATGTGATCAAGTCGGTCCCATGCCGTTCCGATTAATTTTCTTT
GCGGCTTCCTGGATTCTGTCGTCTGCCCATCTTATCGAGGGAAAGTGCAG
GAAGGTGTGCTTTCCTCCATGCCCGGCTCTGAAGCCAAAATAGATTTCCC
CAGAAGAGGAATCAGGGGCTTCATTGCCTGACTGACTGGGTAGGCTTAAG
GAGATTTGTACATGTGTGTGTCAGAAGGGTGGGAGAGAAGGAGTCGCGGG
AAAGTCTTCCCTCCCCACATGCCCTGAACATGCACGCGGATCAGCCAGGG
ACACGCAGGCCTCTATGCCCGGACAAATAAGAGGCTTTCATGCGTGAGTA
ACAAAGAAAGATGCATTTAGTTGAGAAGAATAAATATAGATGTAGGAGAA
ACGACGAAAAGACGATCCGAGGTTGGATTCAGGAGGAGGAAGGGGGGGGG
AGGTCATGGGGGCGAGGGCAAAGGTCGGGTACAGGAGGAGCACATGGTTC
TTTCCCTCCTCCAAAATTTTCGATAGCTGGGAGAACATTGAATAAAGAGA
GCGATCACCTAAAAAATGAAGGGAAAAGGAAGCACGCA back to topprotein sequence of rna6168 >rna6168-protein ID=rna6168-protein|Name=rna6168|organism=Nannochloropsis gaditana|type=polypeptide|length=355bp
MDKADGDDGKIVIKVKTLKGGGENSVSLKVVPNMTIGELKAQIAASALEV
PCESQRLVFQGCMLKDDRKTLAEHKLTEGSCVLLSVLSPSVSNRGSSASP
SIASPASSLPSNPSPNNPTSLPSPVIPSPSSTASPAVVILRAAITGVRSS
NSPEVGTLALQTLSTMLGNIIANPMEEKFRQFKKSNPAFLRRVGSASGTG
AILRAAGFQESAQTWVLQPSEQGWGVLCTAKGEIDAAIAALPPSLPPPGP
GASGRQPAMAGLGGGLEGGGGGGRGARMDPTMLATLMGMMQSNPALRAQA
LRLFGASDGPGQARSVEALLNNPALVNQLAQQYEVREVEGGGSRRGRKRW
REGCG back to topmRNA from alignment at CM002467.1:755032..757910- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6168 ID=rna6168|Name=rna6168|organism=Nannochloropsis gaditana|type=mRNA|length=2879bp|location=Sequence derived from alignment at CM002467.1:755032..757910- (Nannochloropsis gaditana)
CGATGCGTGCTCCTGATGGTGGTGCTCTTCCCTCATGAGCTGTTGCATGG
ATCTGTACCGGACCAAGACCTCCTTCATCTTCTCGATCAGCTTGGCATTT
TCCGCCCTCAGTCGTAGCACCTCCTCGTCCTTCCCTCCCTCATTCTCTCC
CTCCTTCCCTCCCTCCTTCCCGTCGATGGCCCGCGCCAAGGCTACTTCTA
ACGCCGCTACCCGCTCTGCCCTTTCCTCGTTCTGTGCCTTCACCTCCCCG
GCCGCCTTTTGCAAGCCTCGGTAGCGACCCAACAGCTCCTTCATCTTCGC
CATCAGCTTCTCCTTCTCCTCTTGGGCAGCCTTGAGCGCCTCGTCGCCGC
CGTGGGAACTAGCACCCTCGGCCCTTTGAGGGCGGTCCCCTCGGGGGGAC
GTGAGTGACACTTCGTTGAACCGGGACTCCAACGTCCTGTATTGTTCTTC
CAGCGCTGCGTATCGCTCGGCCAGGGAGGAGGTCGGTGCGTTCCTTGTCG
GTGGGGATGGTAAATCCGCATCATTGTCGACTTTTGCGCCGTCGAACCCT
CCGCCTCCGTCCTTGCCTTTGCTGCGGCGAAGATAAACCAACTCTTCTTC
CAATACTCGGAGCTTGGTGACTTGACCCTGACAGAGCGCCAGGAGTTCTC
CGCGCGTACACCCTTCGTATTTGCACGCGACTTCCGGTGGGCGAGGCGGG
GAGGATGTCTGCGGCGAGTCATGGGAGCAGGACTGCGAGCGTTGTAATCC
GTCGAGGTCAAAAGCCGTGGAGGAGGCTTTTTTCAGCTTTTCCGCTGCTT
CCTTGGCCTTGGACAGGAAATCCATGGGCACCTGCATGAGAAACGTGCAA
CGAATCGAGCCGTAAGATTAATTTGTGGGAGGAAGGGCAGGACCCCTCCA
ACGACGAGAGGAGCGGCCCGACCGGAACAATGACAAGGAGTCAAAAAATT
CAAGGTGAAGGGCGTGAACGAGGGTGCATCATGCAACCTGCACACGTTGC
ATGACATTTTCATGATGCATAAAGGTCCTAGTTAGGGTCTCGGGGAGGAA
TAGACGCCTAAATGGAACGAATCGCTTGCTTTATCACATTGACTGCATCC
TCGCTCAGCGAGCCCGGGAAAGGTGGGCGATGACCTACCCAATACAAATT
TAAGAGGAAACAAACGTGCCCGAGAAGTACACTGGGCTGAAGCCGTCCAC
GAATGGAGACTTGTTGAATGTAAAATGCCCAGACTGGTGCTTGGTACCAT
TCAATTAGGTCTTTGGCAGGAGTCAGGATTGCGAGTGCAGTCACAGGCAG
CCTCCCCCTCCTCCCTCCCTTCTCCAATCAGCGTGCAGTTAGAAGACCTT
CAGGACAGAGCAAGCCATGGATAAGGCTGACGGAGACGATGGAAAGATAG
TCATCAAGGTGAAGACGCTCAAGGGGGGAGGAGAAAACAGCGTCTCCTTG
AAAGTGGTTCCTAATATGACAATTGGAGAGCTGAAGGTACGTTGCGTGAT
CGAGAGCTCGATGCGAGGTAGGCACAGGGACTCTGTACTCTTGATCGAAT
TGATCGGAGCCTGCTCTACACCCTACACCAAGACTCTTCCTGACGCGTGT
CCTCCCCGGAATTGACATAGGCACAAATCGCGGCGAGTGCCTTGGAAGTT
CCTTGCGAATCCCAACGCCTGGTTTTTCAGGGGTGCATGCTCAAGGACGA
CCGCAAAACGCTTGCCGAGCACAAGCTGACCGAAGGCTCCTGTGTCCTAC
TTTCGGTGCTATCTCCCAGCGTGAGCAACCGCGGCAGCAGCGCCTCCCCC
TCCATTGCAAGCCCTGCCTCTTCATTACCTTCCAACCCAAGCCCGAACAA
CCCCACAAGTTTACCTTCCCCTGTGATCCCTTCGCCCTCCTCCACTGCTT
CCCCGGCCGTCGTCATCCTACGTGCCGCCATTACCGGTGTTCGTAGCTCC
AATTCCCCCGAGGTGGGGACGCTCGCCCTTCAGACCTTGTCCACAATGCT
CGGGAATATCATCGCCAACCCCATGGAGGAGAAATTCCGGCAATTTAAAA
AGTCAAATCCAGCATTCCTTCGAAGGGTGGGCTCGGGTGCGTGCCCCACG
CTTTCTGAATCCCGTCCCCAACCTTTTCCCTCCGTCCCTTCCTCCCTTCC
TACCACGTATCCGCCTTCGCTCCCTTTTACTCCAGGCCGGCCCATCTCAC
CCATGACCTTCCTCCCCTCAATTTCTCCTCAGCCTCAGGCACTGGGGCCA
TCCTGCGGGCGGCTGGATTCCAGGAGTCTGCGCAAACATGGGTCCTGCAA
CCCTCGGAGCAAGGGTGGGGTGTCTTGTGTACTGCCAAAGGGGAAATCGA
CGCGGCGATTGCCGCCCTGCCTCCCTCCCTTCCTCCCCCGGGACCTGGAG
CGTCTGGACGACAGCCGGCGATGGCGGGTTTGGGGGGAGGGCTGGAGGGA
GGGGGTGGGGGAGGGAGGGGCGCAAGAATGGACCCTACGATGCTGGCCAC
ATTGATGGGAATGATGCAGAGCAACCCGGTGAGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGAATATCAGCGCCACGCGTAGTGGGCTTCCTTCCTCC
TTCAAGAATGCCTCCTTCAAAAGACGTTTTCCTGATTCCCTCTCCTCTTG
CTTGTGAACCCGCCCTGCGCTCCTGCTGATTCTGTTCCCTCAGGCCTTAC
GCGCCCAAGCCCTCCGGTTGTTCGGTGCCAGCGACGGTCCCGGGCAGGCA
AGGAGCGTCGAAGCTCTCCTGAATAACCCGGCGCTTGTGAACCAGCTAGC
GCAGCAGTACGAGGTGAGGGAAGTGGAAGGGGGGGGGAGTCGCAGGGGAA
GGAAGCGATGGAGGGAGGGCTGCGGGTGA back to topCoding sequence (CDS) from alignment at CM002467.1:755032..757910- >rna6168 ID=rna6168|Name=rna6168|organism=Nannochloropsis gaditana|type=CDS|length=4272bp|location=Sequence derived from alignment at CM002467.1:755032..757910- (Nannochloropsis gaditana)
GCCTTACGCGCCCAAGCCCTCCGGTTGTTCGGTGCCAGCGACGGTCCCGG
GCAGGCAAGGAGCGTCGAAGCTCTCCTGAATAACCCGGCGCTTGTGAACC
AGCTAGCGCAGCAGTACGAGGTGAGGGAAGTGGAAGGGGGGGGGAGTCGC
AGGGGAAGGAAGCGATGGAGGGAGGGCTGCGGGTGACCTCAGGCACTGGG
GCCATCCTGCGGGCGGCTGGATTCCAGGAGTCTGCGCAAACATGGGTCCT
GCAACCCTCGGAGCAAGGGTGGGGTGTCTTGTGTACTGCCAAAGGGGAAA
TCGACGCGGCGATTGCCGCCCTGCCTCCCTCCCTTCCTCCCCCGGGACCT
GGAGCGTCTGGACGACAGCCGGCGATGGCGGGTTTGGGGGGAGGGCTGGA
GGGAGGGGGTGGGGGAGGGAGGGGCGCAAGAATGGACCCTACGATGCTGG
CCACATTGATGGGAATGATGCAGAGCAACCCGGCACAAATCGCGGCGAGT
GCCTTGGAAGTTCCTTGCGAATCCCAACGCCTGGTTTTTCAGGGGTGCAT
GCTCAAGGACGACCGCAAAACGCTTGCCGAGCACAAGCTGACCGAAGGCT
CCTGTGTCCTACTTTCGGTGCTATCTCCCAGCGTGAGCAACCGCGGCAGC
AGCGCCTCCCCCTCCATTGCAAGCCCTGCCTCTTCATTACCTTCCAACCC
AAGCCCGAACAACCCCACAAGTTTACCTTCCCCTGTGATCCCTTCGCCCT
CCTCCACTGCTTCCCCGGCCGTCGTCATCCTACGTGCCGCCATTACCGGT
GTTCGTAGCTCCAATTCCCCCGAGGTGGGGACGCTCGCCCTTCAGACCTT
GTCCACAATGCTCGGGAATATCATCGCCAACCCCATGGAGGAGAAATTCC
GGCAATTTAAAAAGTCAAATCCAGCATTCCTTCGAAGGGTGGGCTCGGAT
GGATAAGGCTGACGGAGACGATGGAAAGATAGTCATCAAGGTGAAGACGC
TCAAGGGGGGAGGAGAAAACAGCGTCTCCTTGAAAGTGGTTCCTAATATG
ACAATTGGAGAGCTGAAGGCCTTACGCGCCCAAGCCCTCCGGTTGTTCGG
TGCCAGCGACGGTCCCGGGCAGGCAAGGAGCGTCGAAGCTCTCCTGAATA
ACCCGGCGCTTGTGAACCAGCTAGCGCAGCAGTACGAGGTGAGGGAAGTG
GAAGGGGGGGGGAGTCGCAGGGGAAGGAAGCGATGGAGGGAGGGCTGCGG
GTGACCTCAGGCACTGGGGCCATCCTGCGGGCGGCTGGATTCCAGGAGTC
TGCGCAAACATGGGTCCTGCAACCCTCGGAGCAAGGGTGGGGTGTCTTGT
GTACTGCCAAAGGGGAAATCGACGCGGCGATTGCCGCCCTGCCTCCCTCC
CTTCCTCCCCCGGGACCTGGAGCGTCTGGACGACAGCCGGCGATGGCGGG
TTTGGGGGGAGGGCTGGAGGGAGGGGGTGGGGGAGGGAGGGGCGCAAGAA
TGGACCCTACGATGCTGGCCACATTGATGGGAATGATGCAGAGCAACCCG
GCACAAATCGCGGCGAGTGCCTTGGAAGTTCCTTGCGAATCCCAACGCCT
GGTTTTTCAGGGGTGCATGCTCAAGGACGACCGCAAAACGCTTGCCGAGC
ACAAGCTGACCGAAGGCTCCTGTGTCCTACTTTCGGTGCTATCTCCCAGC
GTGAGCAACCGCGGCAGCAGCGCCTCCCCCTCCATTGCAAGCCCTGCCTC
TTCATTACCTTCCAACCCAAGCCCGAACAACCCCACAAGTTTACCTTCCC
CTGTGATCCCTTCGCCCTCCTCCACTGCTTCCCCGGCCGTCGTCATCCTA
CGTGCCGCCATTACCGGTGTTCGTAGCTCCAATTCCCCCGAGGTGGGGAC
GCTCGCCCTTCAGACCTTGTCCACAATGCTCGGGAATATCATCGCCAACC
CCATGGAGGAGAAATTCCGGCAATTTAAAAAGTCAAATCCAGCATTCCTT
CGAAGGGTGGGCTCGGATGGATAAGGCTGACGGAGACGATGGAAAGATAG
TCATCAAGGTGAAGACGCTCAAGGGGGGAGGAGAAAACAGCGTCTCCTTG
AAAGTGGTTCCTAATATGACAATTGGAGAGCTGAAGGCCTTACGCGCCCA
AGCCCTCCGGTTGTTCGGTGCCAGCGACGGTCCCGGGCAGGCAAGGAGCG
TCGAAGCTCTCCTGAATAACCCGGCGCTTGTGAACCAGCTAGCGCAGCAG
TACGAGGTGAGGGAAGTGGAAGGGGGGGGGAGTCGCAGGGGAAGGAAGCG
ATGGAGGGAGGGCTGCGGGTGACCTCAGGCACTGGGGCCATCCTGCGGGC
GGCTGGATTCCAGGAGTCTGCGCAAACATGGGTCCTGCAACCCTCGGAGC
AAGGGTGGGGTGTCTTGTGTACTGCCAAAGGGGAAATCGACGCGGCGATT
GCCGCCCTGCCTCCCTCCCTTCCTCCCCCGGGACCTGGAGCGTCTGGACG
ACAGCCGGCGATGGCGGGTTTGGGGGGAGGGCTGGAGGGAGGGGGTGGGG
GAGGGAGGGGCGCAAGAATGGACCCTACGATGCTGGCCACATTGATGGGA
ATGATGCAGAGCAACCCGGCACAAATCGCGGCGAGTGCCTTGGAAGTTCC
TTGCGAATCCCAACGCCTGGTTTTTCAGGGGTGCATGCTCAAGGACGACC
GCAAAACGCTTGCCGAGCACAAGCTGACCGAAGGCTCCTGTGTCCTACTT
TCGGTGCTATCTCCCAGCGTGAGCAACCGCGGCAGCAGCGCCTCCCCCTC
CATTGCAAGCCCTGCCTCTTCATTACCTTCCAACCCAAGCCCGAACAACC
CCACAAGTTTACCTTCCCCTGTGATCCCTTCGCCCTCCTCCACTGCTTCC
CCGGCCGTCGTCATCCTACGTGCCGCCATTACCGGTGTTCGTAGCTCCAA
TTCCCCCGAGGTGGGGACGCTCGCCCTTCAGACCTTGTCCACAATGCTCG
GGAATATCATCGCCAACCCCATGGAGGAGAAATTCCGGCAATTTAAAAAG
TCAAATCCAGCATTCCTTCGAAGGGTGGGCTCGGATGGATAAGGCTGACG
GAGACGATGGAAAGATAGTCATCAAGGTGAAGACGCTCAAGGGGGGAGGA
GAAAACAGCGTCTCCTTGAAAGTGGTTCCTAATATGACAATTGGAGAGCT
GAAGGCCTTACGCGCCCAAGCCCTCCGGTTGTTCGGTGCCAGCGACGGTC
CCGGGCAGGCAAGGAGCGTCGAAGCTCTCCTGAATAACCCGGCGCTTGTG
AACCAGCTAGCGCAGCAGTACGAGGTGAGGGAAGTGGAAGGGGGGGGGAG
TCGCAGGGGAAGGAAGCGATGGAGGGAGGGCTGCGGGTGACCTCAGGCAC
TGGGGCCATCCTGCGGGCGGCTGGATTCCAGGAGTCTGCGCAAACATGGG
TCCTGCAACCCTCGGAGCAAGGGTGGGGTGTCTTGTGTACTGCCAAAGGG
GAAATCGACGCGGCGATTGCCGCCCTGCCTCCCTCCCTTCCTCCCCCGGG
ACCTGGAGCGTCTGGACGACAGCCGGCGATGGCGGGTTTGGGGGGAGGGC
TGGAGGGAGGGGGTGGGGGAGGGAGGGGCGCAAGAATGGACCCTACGATG
CTGGCCACATTGATGGGAATGATGCAGAGCAACCCGGCACAAATCGCGGC
GAGTGCCTTGGAAGTTCCTTGCGAATCCCAACGCCTGGTTTTTCAGGGGT
GCATGCTCAAGGACGACCGCAAAACGCTTGCCGAGCACAAGCTGACCGAA
GGCTCCTGTGTCCTACTTTCGGTGCTATCTCCCAGCGTGAGCAACCGCGG
CAGCAGCGCCTCCCCCTCCATTGCAAGCCCTGCCTCTTCATTACCTTCCA
ACCCAAGCCCGAACAACCCCACAAGTTTACCTTCCCCTGTGATCCCTTCG
CCCTCCTCCACTGCTTCCCCGGCCGTCGTCATCCTACGTGCCGCCATTAC
CGGTGTTCGTAGCTCCAATTCCCCCGAGGTGGGGACGCTCGCCCTTCAGA
CCTTGTCCACAATGCTCGGGAATATCATCGCCAACCCCATGGAGGAGAAA
TTCCGGCAATTTAAAAAGTCAAATCCAGCATTCCTTCGAAGGGTGGGCTC
GGATGGATAAGGCTGACGGAGACGATGGAAAGATAGTCATCAAGGTGAAG
ACGCTCAAGGGGGGAGGAGAAAACAGCGTCTCCTTGAAAGTGGTTCCTAA
TATGACAATTGGAGAGCTGAAG back to top
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