EWM24526.1, cds6147 (CDS) Nannochloropsis gaditana

Overview
NameEWM24526.1
Unique Namecds6147
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:744923..745150 -
Alignment locationCM002467.1:744560..744736 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24526.1
Productfatty acid desaturase
Partialtrue
Orig transcript idgnl|cribi|Naga_100427g6.10030.mrna
GbkeyCDS
End range.
End range745150
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:744923..745150 -
CM002467.1supercontigCM002467.1:744560..744736 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM24526.1 vs. NCBI_GenBank
Match: gi|585106033|gb|EWM24526.1| (fatty acid desaturase, partial [Nannochloropsis gaditana])

HSP 1 Score: 276.174 bits (705), Expect = 4.594e-94
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0
Query:    1 DLSHNITDGHVAHHLFFTQIPHYHLKDATAAVRQLLTPTGTYKKKQSWNFLGKFTELNYKLKYVAGQGVLSYVDWEAIQKGASPPVSSTDASPATPAAPLPKVAVTCATEPLIALEAKGRSTRKRSPARSSSPP 134
            DLSHNITDGHVAHHLFFTQIPHYHLKDATAAVRQLLTPTGTYKKKQSWNFLGKFTELNYKLKYVAGQGVLSYVDWEAIQKGASPPVSSTDASPATPAAPLPKVAVTCATEPLIALEAKGRSTRKRSPARSSSPP
Sbjct:    1 DLSHNITDGHVAHHLFFTQIPHYHLKDATAAVRQLLTPTGTYKKKQSWNFLGKFTELNYKLKYVAGQGVLSYVDWEAIQKGASPPVSSTDASPATPAAPLPKVAVTCATEPLIALEAKGRSTRKRSPARSSSPP 134          
BLAST of EWM24526.1 vs. NCBI_GenBank
Match: gi|1154501355|gb|AQX92138.1| (Om [Nannochloropsis oceanica])

HSP 1 Score: 163.696 bits (413), Expect = 3.005e-46
Identity = 89/139 (64.03%), Postives = 103/139 (74.10%), Query Frame = 0
Query:    1 DLSHNITDGHVAHHLFFTQIPHYHLKDATAAVRQLLTPTGTYKKKQSWNFLGKFTELNYKLKYVAGQGVLSYVDWEAIQKGASPPVSSTDASPATPAAPLPKVAVTCATEPLIALEA-----KGRSTRKRSPARSSSPP 134
            DLSHNITDGHVAHHLFFTQIPHYHL  ATAAVRQ L PTGTYKK++SWNFL +FTELNY+LKYVAGQGVLSYVDWE  +K  +P  + T +S ++ ++ LP  A   A   +          +GR TRKRSP RSSSPP
Sbjct:  274 DLSHNITDGHVAHHLFFTQIPHYHLTAATAAVRQCLQPTGTYKKRRSWNFLARFTELNYRLKYVAGQGVLSYVDWEVARK--TPASAVTSSSSSSSSSSLPAEAAVKAAAAVPVAAVAAPVREGRPTRKRSPTRSSSPP 410          
BLAST of EWM24526.1 vs. NCBI_GenBank
Match: gi|802706924|gb|KKA71383.1| (fat-2 [Pristionchus pacificus])

HSP 1 Score: 88.5817 bits (218), Expect = 1.808e-18
Identity = 39/67 (58.21%), Postives = 54/67 (80.60%), Query Frame = 0
Query:    2 LSHNITDGHVAHHLFFTQIPHYHLKDATAAVRQLLTPTGTYKKKQSWNFLGKFTELNYKLKYVAGQG 68
            L H+ITDGHVAHHLFFT IPHY+L  ATAA+++ L P G Y+K++S++FL +F  LN +L+Y+ G+G
Sbjct:  230 LMHHITDGHVAHHLFFTGIPHYNLMTATAAIQEKLKPFGVYRKEKSYDFLWQFASLNRRLEYLVGEG 296          
BLAST of EWM24526.1 vs. NCBI_GenBank
Match: gi|402588084|gb|EJW82018.1| (fatty acid desaturase [Wuchereria bancrofti])

HSP 1 Score: 81.6481 bits (200), Expect = 8.223e-17
Identity = 38/73 (52.05%), Postives = 53/73 (72.60%), Query Frame = 0
Query:    2 LSHNITDGHVAHHLFFTQIPHYHLKDATAAVRQLLTPTGTYKKKQSWNFLGKFTELNYKLKYVAGQ--GVLSY 72
            L H+ITDGHVAHH FFT+IPHYHL +AT A++ +L P   Y+ K + +FL  +  LN KL+Y+ G+  G+L+Y
Sbjct:  108 LLHHITDGHVAHHFFFTKIPHYHLMEATTAIKSVLEPYKAYRCKSNADFLLDYLTLNIKLEYLIGRGTGILTY 180          
BLAST of EWM24526.1 vs. NCBI_GenBank
Match: gi|734552682|gb|KHN80128.1| (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1 [Toxocara canis])

HSP 1 Score: 82.8037 bits (203), Expect = 4.541e-16
Identity = 39/74 (52.70%), Postives = 54/74 (72.97%), Query Frame = 0
Query:    2 LSHNITDGHVAHHLFFTQIPHYHLKDATAAVRQLLTPT-GTYKKKQSWNFLGKFTELNYKLKYVAGQ--GVLSY 72
            L H+ITDGHVAHH FFT+IPHYHL +AT A++ +L P  G YK +  ++F+ +F  LN KL+Y+ G+  G+L Y
Sbjct:  271 LLHHITDGHVAHHFFFTRIPHYHLMEATEAIKAVLEPYKGAYKSQSCYDFILEFLILNLKLEYMIGRGTGILKY 344          
BLAST of EWM24526.1 vs. NCBI_GenBank
Match: gi|170588647|ref|XP_001899085.1| (Fatty acid desaturase family protein [Brugia malayi])

HSP 1 Score: 82.4185 bits (202), Expect = 5.566e-16
Identity = 38/73 (52.05%), Postives = 53/73 (72.60%), Query Frame = 0
Query:    2 LSHNITDGHVAHHLFFTQIPHYHLKDATAAVRQLLTPTGTYKKKQSWNFLGKFTELNYKLKYVAGQ--GVLSY 72
            L H+ITDGHVAHH FFT+IPHYHL +AT A++ +L P   Y+ K + +FL  +  LN KL+Y+ G+  G+L+Y
Sbjct:  297 LLHHITDGHVAHHFFFTKIPHYHLMEATTAIKSVLEPYKVYRCKSNADFLLDYLTLNIKLEYLIGRGTGILTY 369          
BLAST of EWM24526.1 vs. NCBI_GenBank
Match: gi|1009342081|emb|CRZ23924.1| (Bm6111 [Brugia malayi])

HSP 1 Score: 82.4185 bits (202), Expect = 5.771e-16
Identity = 38/73 (52.05%), Postives = 53/73 (72.60%), Query Frame = 0
Query:    2 LSHNITDGHVAHHLFFTQIPHYHLKDATAAVRQLLTPTGTYKKKQSWNFLGKFTELNYKLKYVAGQ--GVLSY 72
            L H+ITDGHVAHH FFT+IPHYHL +AT A++ +L P   Y+ K + +FL  +  LN KL+Y+ G+  G+L+Y
Sbjct:  290 LLHHITDGHVAHHFFFTKIPHYHLMEATTAIKSVLEPYKVYRCKSNADFLLDYLTLNIKLEYLIGRGTGILTY 362          
BLAST of EWM24526.1 vs. NCBI_GenBank
Match: gi|312069608|ref|XP_003137761.1| (fatty acid desaturase [Loa loa] >gi|307767069|gb|EFO26303.1| fatty acid desaturase [Loa loa])

HSP 1 Score: 81.2629 bits (199), Expect = 1.586e-15
Identity = 37/71 (52.11%), Postives = 52/71 (73.24%), Query Frame = 0
Query:    4 HNITDGHVAHHLFFTQIPHYHLKDATAAVRQLLTPTGTYKKKQSWNFLGKFTELNYKLKYVAGQ--GVLSY 72
            H+ITDGHVAHH FFT+IPHYHL +AT A++ +L P   Y+ K + +FL  +  LN KL+Y+ G+  G+L+Y
Sbjct:  298 HHITDGHVAHHFFFTKIPHYHLMEATVAIKSVLEPYKAYRCKSNTDFLLDYLTLNIKLEYLIGRGTGILTY 368          
BLAST of EWM24526.1 vs. NCBI_GenBank
Match: gi|298709121|emb|CBJ31067.1| (Fatty acid desaturase [Ectocarpus siliculosus])

HSP 1 Score: 78.5666 bits (192), Expect = 1.547e-14
Identity = 38/63 (60.32%), Postives = 45/63 (71.43%), Query Frame = 0
Query:    1 DLSHNITDGHVAHHLFFTQIPHYHLKDATAAVRQLLTPTGTYKKKQSWNFLGKFTELNYKLKY 63
            D  HNITDGHVAHHLFFT+IPHY+LK ATAA+R  L   G Y+ + + NFL  F   NYKL +
Sbjct:  262 DAHHNITDGHVAHHLFFTKIPHYNLKKATAAIRPSLEKLGLYRYRNNPNFLWVFARENYKLGF 324          
BLAST of EWM24526.1 vs. NCBI_GenBank
Match: gi|802675401|gb|KKA68316.1| (hypothetical protein PRIPAC_12236, partial [Pristionchus pacificus])

HSP 1 Score: 76.6406 bits (187), Expect = 8.147e-14
Identity = 35/67 (52.24%), Postives = 49/67 (73.13%), Query Frame = 0
Query:    2 LSHNITDGHVAHHLFFTQIPHYHLKDATAAVRQLLTPTGTYKKKQSWNFLGKFTELNYKLKYVAGQG 68
            L H+ITDGHVAHHLFFT IPHY+L  ATA +++ L P G Y+ ++S +FL +   L  +L+Y+ G+G
Sbjct:  309 LMHHITDGHVAHHLFFTGIPHYNLMKATAVIKEKLEPYGVYRYQKSPDFLFQLAGLTNRLEYLVGEG 375          
The following BLAST results are available for this feature:
BLAST of EWM24526.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106033|gb|EWM24526.1|4.594e-94100.00fatty acid desaturase, partial [Nannochloropsis ga... [more]
gi|1154501355|gb|AQX92138.1|3.005e-4664.03Om [Nannochloropsis oceanica][more]
gi|802706924|gb|KKA71383.1|1.808e-1858.21fat-2 [Pristionchus pacificus][more]
gi|402588084|gb|EJW82018.1|8.223e-1752.05fatty acid desaturase [Wuchereria bancrofti][more]
gi|734552682|gb|KHN80128.1|4.541e-1652.70Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
gi|170588647|ref|XP_001899085.1|5.566e-1652.05Fatty acid desaturase family protein [Brugia malay... [more]
gi|1009342081|emb|CRZ23924.1|5.771e-1652.05Bm6111 [Brugia malayi][more]
gi|312069608|ref|XP_003137761.1|1.586e-1552.11fatty acid desaturase [Loa loa] >gi|307767069|gb|E... [more]
gi|298709121|emb|CBJ31067.1|1.547e-1460.32Fatty acid desaturase [Ectocarpus siliculosus][more]
gi|802675401|gb|KKA68316.1|8.147e-1452.24hypothetical protein PRIPAC_12236, partial [Pristi... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6162rna6162Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications