rna6162, rna6162 (mRNA) Nannochloropsis gaditana

Overview
Namerna6162
Unique Namerna6162
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2497
Alignment locationCM002467.1:743661..745151 -

Link to JBrowse

Properties
Property NameValue
Productfatty acid desaturase
Orig transcript idgnl|cribi|Naga_100427g6.10030.mrna
Orig protein idgnl|cribi|Naga_100427g6.10030
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:743661..745151 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100427g6gene5952Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6162rna6162-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24526.1cds6147Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6162 ID=rna6162|Name=rna6162|organism=Nannochloropsis gaditana|type=mRNA|length=2497bp
ATCCACATACATGATGATAACACAACAGAACGACATTCCGCCTATGTCTA
TTGTTGAACGGGACGCTTCGCTTCGGCCACCGTCATGAAGAGCACCCCTT
GGATACCTCCATCGTCGTCAGTGCCGGGACGGCCTCGTCCTCGAGTTTAC
CTCCTTATTTCCTGTCTCCTCCTCTTATTTATTCTCGAGGTTTACACTTT
CCTTACAACTCAAGTGCTACGTGAAAGCTCTGTCACGATCAGTCACAACA
AATTCCGCCTTCAATCCCGGATTTCTGCGCTTCCACCTAAGCAAATCGTT
GTCATCGGCGCTGGCATCGGTGGACTTGTCACGGCCGGACGCTTGGCTCG
TGCGACCCGTGGTCGTAATGTCTCAATCACGATTGTGGAGAAAAATGATA
GGGAAAGTGCTGGAGGCCGGTTAGGAGAGTATACCTGGGAGGGGCATAGG
TGGGAGACCGGACCGAGCCTACTGCTGCTACCGGATGTATATATGGAGAT
ATTTGAGCACTTGGGTGGATCTTTTCCCAGTGCATCAAACAGCACGACAG
AAAGAACCAGCAAAGATGACATGACGCGGACAAGCGCAGTCAAATGCGGG
GGCGGCCGATGGGAAAGACAGGCAGAGCCGCCCATAGCTTCCGGGGGCTC
CGTGTCAGATGGTATAGGGCCCTCACGCCTGACCAAAGTGGAACCTAGTT
ACCTCGTGATATTTGGAGACAACGATCGACTTGAACTGTACAGCAACCGG
AGTCGCATGGTGGAAGCCATCAATCGCTTGGAGCCCGGTGGCTTCCCTCG
GTATCAAGACTATCTCGAGAGCGCTCAAAACAATTTGGATTTTGGCTTGT
CGGCATTCATCAAAGAATCGCCGCAGTGGGAGTATTTCCCCGCCTTTTGC
AGAAATTTGAACCTGAACGCACGCTTTTGGCCTTTAGCATCGCATCACAG
ACAGCTGGAAGGCTTGTTTGATTCGAAAAAGTTGCAAGCCGCCCTCTCCT
TTCAGGATTTGTACGTGGGCCTCACCCCCTACGAGGCCCCCGCCGTTTTC
TCCTTGCTCCAGGCCATTGAACTCAATCAAGGCGTCTTCTATCCTTTGGG
CGGGTTTGCACAGGTCAGTCGTGAGCTCCTCCGACTCGTGGAGGCAAACG
GCGTTTGCTGTCTATTTGACAGTCCCGTTGCCGAGATACTTGTGGAAAGC
GCTGGCACAGGACTACGCACCCGCGGTGTCCGCCTCCAGAACCATCACGT
CCTCCCCGCGGATCTGGTCGTCAGCAATGTGGACCTACCGTACACGAACA
AATACCTCTTTTCCCGCCTCCATGCCCAGTCCAAAGACCACGACACACGA
GGCTTCTCGTCCTCCGTCATCTCCTTCCTGTGGGCGTTTGACAGGCCCTT
GCCTTCGTTGCGCCATCATACGACATTTTTGGCAGCCCGGGAGGAGGAGG
TGGAGGCGGAGGGAGGGCGTAAGGAGGGAGGGAGGAGCGGTGCGAAGGAA
GGAATCGACCCGGCGAAGGCAGCCTGGGAGGCCGTTTTTAAAGACAAGCG
CTTTGACGGTCGTTTCCTCAATTTTTACGTGCATGCACCGGCGCGCACGG
ACACCTCCGTGTGTCCCCCGGGGCATGACGCGGTTATGGTTTTGGTACCC
TGTCCGGTACTGGGGAAGGAAGGAGGGGGGCAGGAGGAGGAGGAGGAGGA
AGCTCGCATGATTGCCGACGCACGGGAGGCGGTGTTGGCCCGCTTCGAAA
GTGTGATGAGGATGGAAGACGTGCGGGATAGCCTCATTCACGAGCGAGTG
ATTGGGCCTCGGGAATGGCGGGAAAAATACAGCCTCAGTCGAGGAGCCGT
CTTTGGGTTGAAGCACGACCTGGGCCAGCTGTCCGTCCTTCGACCGGGGA
GGAAGCATGTGGGGGGGAGGAAGAGGTTGGGGGAGGGAGGGAAGGAGGAA
GGGAGAGAGGGAGGGGGTGCCATTGAGGGCATGTACTATTGCGGCGCCAG
CAGCCGGCCCGGGAATGGCGTGCCGCTGGTGATGGTCGGAGCCAAGTTGC
TGAGTGAGATGATCCTGCAGGAGTGTTTTCCCGAATGAGCGGACGGACAA
GTAAGGTGTCGGGGAGGGCGAGGTCTATGGAGGAGGGCACTAGGTGGTTT
GTTGGGGAGGAAGGGGAGAGAGCAGTACACATTTCTGCGGCGTGGTGCAG
ACGTGGGAAGGGCAAATGGACGGTGTGGGGGGGGGGGAAGGGAGGGCGAT
GCGGACAGAGCTCGAGGAGATGGTTTCGGAGGTGAAAGAGGCACACCGTC
TGTGGAAGTGACGATGACGAGGTGGGACGACATGCCTGGTGATGAGTTTG
GAAGACAAGGCCCGACTAGACTCATCACCTGGCCGTTGCCGCCAGAGAGA
AGCGCACGCTTACTACACTTGTCGAGCGTCACATTGCGTGCCCAGAAAGG
CTTAAGTTCATTGTGAAAGAAGTCGGGAAGGGTTTCGTTGTCTCCAC
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protein sequence of rna6162

>rna6162-protein ID=rna6162-protein|Name=rna6162|organism=Nannochloropsis gaditana|type=polypeptide|length=134bp
DLSHNITDGHVAHHLFFTQIPHYHLKDATAAVRQLLTPTGTYKKKQSWNF
LGKFTELNYKLKYVAGQGVLSYVDWEAIQKGASPPVSSTDASPATPAAPL
PKVAVTCATEPLIALEAKGRSTRKRSPARSSSPP
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mRNA from alignment at CM002467.1:743661..745151-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6162 ID=rna6162|Name=rna6162|organism=Nannochloropsis gaditana|type=mRNA|length=1491bp|location=Sequence derived from alignment at CM002467.1:743661..745151- (Nannochloropsis gaditana)
AGACCTGTCGCACAACATCACGGACGGCCACGTCGCCCACCACCTCTTCT
TCACCCAGATCCCGCACTACCACCTGAAGGACGCTACGGCCGCCGTACGG
CAGCTCTTGACGCCCACGGGCACCTACAAGAAGAAGCAATCCTGGAATTT
TCTGGGAAAATTCACTGAGTTGAACTACAAGTTGAAGTATGTTGCGGGAC
AAGGGGTGCTCTCCTACGTGGACTGGGAGGTAGGGAAAGAGGAGGGGGAG
AGGGAAGGGGGGAGGGCGGGCAGGAGGGCGGGGAGGAGAAAGGGAGGGAG
GGGGGAAGGACGGATGGGAAGGGGAACGAGGACACGAAGGTCTGTCAGAC
GAGGCGCATGATATCCATTCATCCTTTTTCTTCCCTCCCCCTCCCCTTCC
CTTCTCGAACGTCAGGCTATTCAGAAGGGTGCTTCCCCCCCGGTTTCTTC
CACCGACGCCTCCCCTGCCACTCCCGCAGCGCCCCTACCTAAGGTGGCTG
TCACCTGCGCGACAGAACCGTTAATCGCCCTTGAAGCGAAGGGAAGATCA
ACCCGAAAGCGCTCTCCGGCACGCTCCTCTTCACCTCCGTAGGAGGAGAG
GAAAAAGAGAATGGTAGATAGTTATTTAATGTGTGTGTAGTAGTCCAGCC
GAGCACTGGTGAGGCAGAGGCGCAGAGAAGAGGGAAGGTGTGGGAGGGAG
GGAGGGAGGGAGGGGTGACCGGAGGGGAGGGAGGAGAGGGAGGAATTGAG
AAAGGGAAGGCGGACGGGCTGGCGAGAAAAAGGCGACTGAACGTTTTCAA
GCTGCGTGTGCGCAGACTTTCATGTGGAAGGGCCCGCGCAAAGGAGATAG
ACAGAGAAAGGAAGGACGGCATGGAGACGAAAGAGGCTGACATGAATGTA
GATCCGATGGCAGGGTATAGACGGGGGCCCAAATGATTGAGTCACTCGGC
AGGAGTGGTATCCCCTCCCTCCTTCCCTGCCCCCCCTCCTTCCTCTTCAC
TCCGAGGTGCATCCCACCCTGCCCACCGTCCTGTAGACGCAGGGGCGAGC
AGAAAGGGGGGGTAGCGGGAAAGAGGAGACTGGTAACGCTCGGTAACCTC
GTTCGACCGGGGGCTGGGAGGAAAGACGATGGGCACGATTGATTCATATA
TCCCAAGTAACTTCAAGATGACGCTCAGGTAATGCCGAGATGAATCTCAG
CTGCTGCTGACAGATGCGTGGCGGGCCGGGTGGTGACTATGACTGTCAAG
GCTTGATGGCATTCGCTCCCATCCTCCCCAGGACTCTGGGGAGGCGTCCG
GCGAAGGAGAGTGGGAGTTTGGTATGAAGGCGGGCAGGGTCCGTTGGACG
TCTGGGCAAGAAAAAGTAGATTTGATTGACGAGGGAAGAAAGGGAGAGAT
GAAAGGTGTAAGGGCAGAGGAAATCAAGACTATTTTGTTCACCCAACATT
CTCGTTTGCCAAGTTTGCGTGGAGACAACGAAACCCTTCCC
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Coding sequence (CDS) from alignment at CM002467.1:743661..745151-

>rna6162 ID=rna6162|Name=rna6162|organism=Nannochloropsis gaditana|type=CDS|length=810bp|location=Sequence derived from alignment at CM002467.1:743661..745151- (Nannochloropsis gaditana)
GCTATTCAGAAGGGTGCTTCCCCCCCGGTTTCTTCCACCGACGCCTCCCC
TGCCACTCCCGCAGCGCCCCTACCTAAGGTGGCTGTCACCTGCGCGACAG
AACCGTTAATCGCCCTTGAAGCGAAGGGAAGATCAACCCGAAAGCGCTCT
CCGGCACGCTCCTCTTCACCTCCGTAGGACCTGTCGCACAACATCACGGA
CGGCCACGTCGCCCACCACCTCTTCTTCACCCAGATCCCGCACTACCACC
TGAAGGACGCTACGGCCGCCGTACGGCAGCTCTTGACGCCCACGGGCACC
TACAAGAAGAAGCAATCCTGGAATTTTCTGGGAAAATTCACTGAGTTGAA
CTACAAGTTGAAGTATGTTGCGGGACAAGGGGTGCTCTCCTACGTGGACT
GGGAGGCTATTCAGAAGGGTGCTTCCCCCCCGGTTTCTTCCACCGACGCC
TCCCCTGCCACTCCCGCAGCGCCCCTACCTAAGGTGGCTGTCACCTGCGC
GACAGAACCGTTAATCGCCCTTGAAGCGAAGGGAAGATCAACCCGAAAGC
GCTCTCCGGCACGCTCCTCTTCACCTCCGTAGGACCTGTCGCACAACATC
ACGGACGGCCACGTCGCCCACCACCTCTTCTTCACCCAGATCCCGCACTA
CCACCTGAAGGACGCTACGGCCGCCGTACGGCAGCTCTTGACGCCCACGG
GCACCTACAAGAAGAAGCAATCCTGGAATTTTCTGGGAAAATTCACTGAG
TTGAACTACAAGTTGAAGTATGTTGCGGGACAAGGGGTGCTCTCCTACGT
GGACTGGGAG
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Synonyms
Publications