EWM24526.1, cds6147 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24526.1 vs. NCBI_GenBank
Match: gi|585106033|gb|EWM24526.1| (fatty acid desaturase, partial [Nannochloropsis gaditana]) HSP 1 Score: 276.174 bits (705), Expect = 4.594e-94 Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0
Query: 1 DLSHNITDGHVAHHLFFTQIPHYHLKDATAAVRQLLTPTGTYKKKQSWNFLGKFTELNYKLKYVAGQGVLSYVDWEAIQKGASPPVSSTDASPATPAAPLPKVAVTCATEPLIALEAKGRSTRKRSPARSSSPP 134
DLSHNITDGHVAHHLFFTQIPHYHLKDATAAVRQLLTPTGTYKKKQSWNFLGKFTELNYKLKYVAGQGVLSYVDWEAIQKGASPPVSSTDASPATPAAPLPKVAVTCATEPLIALEAKGRSTRKRSPARSSSPP
Sbjct: 1 DLSHNITDGHVAHHLFFTQIPHYHLKDATAAVRQLLTPTGTYKKKQSWNFLGKFTELNYKLKYVAGQGVLSYVDWEAIQKGASPPVSSTDASPATPAAPLPKVAVTCATEPLIALEAKGRSTRKRSPARSSSPP 134
BLAST of EWM24526.1 vs. NCBI_GenBank
Match: gi|1154501355|gb|AQX92138.1| (Om [Nannochloropsis oceanica]) HSP 1 Score: 163.696 bits (413), Expect = 3.005e-46 Identity = 89/139 (64.03%), Postives = 103/139 (74.10%), Query Frame = 0
Query: 1 DLSHNITDGHVAHHLFFTQIPHYHLKDATAAVRQLLTPTGTYKKKQSWNFLGKFTELNYKLKYVAGQGVLSYVDWEAIQKGASPPVSSTDASPATPAAPLPKVAVTCATEPLIALEA-----KGRSTRKRSPARSSSPP 134
DLSHNITDGHVAHHLFFTQIPHYHL ATAAVRQ L PTGTYKK++SWNFL +FTELNY+LKYVAGQGVLSYVDWE +K +P + T +S ++ ++ LP A A + +GR TRKRSP RSSSPP
Sbjct: 274 DLSHNITDGHVAHHLFFTQIPHYHLTAATAAVRQCLQPTGTYKKRRSWNFLARFTELNYRLKYVAGQGVLSYVDWEVARK--TPASAVTSSSSSSSSSSLPAEAAVKAAAAVPVAAVAAPVREGRPTRKRSPTRSSSPP 410
BLAST of EWM24526.1 vs. NCBI_GenBank
Match: gi|802706924|gb|KKA71383.1| (fat-2 [Pristionchus pacificus]) HSP 1 Score: 88.5817 bits (218), Expect = 1.808e-18 Identity = 39/67 (58.21%), Postives = 54/67 (80.60%), Query Frame = 0
Query: 2 LSHNITDGHVAHHLFFTQIPHYHLKDATAAVRQLLTPTGTYKKKQSWNFLGKFTELNYKLKYVAGQG 68
L H+ITDGHVAHHLFFT IPHY+L ATAA+++ L P G Y+K++S++FL +F LN +L+Y+ G+G
Sbjct: 230 LMHHITDGHVAHHLFFTGIPHYNLMTATAAIQEKLKPFGVYRKEKSYDFLWQFASLNRRLEYLVGEG 296
BLAST of EWM24526.1 vs. NCBI_GenBank
Match: gi|402588084|gb|EJW82018.1| (fatty acid desaturase [Wuchereria bancrofti]) HSP 1 Score: 81.6481 bits (200), Expect = 8.223e-17 Identity = 38/73 (52.05%), Postives = 53/73 (72.60%), Query Frame = 0
Query: 2 LSHNITDGHVAHHLFFTQIPHYHLKDATAAVRQLLTPTGTYKKKQSWNFLGKFTELNYKLKYVAGQ--GVLSY 72
L H+ITDGHVAHH FFT+IPHYHL +AT A++ +L P Y+ K + +FL + LN KL+Y+ G+ G+L+Y
Sbjct: 108 LLHHITDGHVAHHFFFTKIPHYHLMEATTAIKSVLEPYKAYRCKSNADFLLDYLTLNIKLEYLIGRGTGILTY 180
BLAST of EWM24526.1 vs. NCBI_GenBank
Match: gi|734552682|gb|KHN80128.1| (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1 [Toxocara canis]) HSP 1 Score: 82.8037 bits (203), Expect = 4.541e-16 Identity = 39/74 (52.70%), Postives = 54/74 (72.97%), Query Frame = 0
Query: 2 LSHNITDGHVAHHLFFTQIPHYHLKDATAAVRQLLTPT-GTYKKKQSWNFLGKFTELNYKLKYVAGQ--GVLSY 72
L H+ITDGHVAHH FFT+IPHYHL +AT A++ +L P G YK + ++F+ +F LN KL+Y+ G+ G+L Y
Sbjct: 271 LLHHITDGHVAHHFFFTRIPHYHLMEATEAIKAVLEPYKGAYKSQSCYDFILEFLILNLKLEYMIGRGTGILKY 344
BLAST of EWM24526.1 vs. NCBI_GenBank
Match: gi|170588647|ref|XP_001899085.1| (Fatty acid desaturase family protein [Brugia malayi]) HSP 1 Score: 82.4185 bits (202), Expect = 5.566e-16 Identity = 38/73 (52.05%), Postives = 53/73 (72.60%), Query Frame = 0
Query: 2 LSHNITDGHVAHHLFFTQIPHYHLKDATAAVRQLLTPTGTYKKKQSWNFLGKFTELNYKLKYVAGQ--GVLSY 72
L H+ITDGHVAHH FFT+IPHYHL +AT A++ +L P Y+ K + +FL + LN KL+Y+ G+ G+L+Y
Sbjct: 297 LLHHITDGHVAHHFFFTKIPHYHLMEATTAIKSVLEPYKVYRCKSNADFLLDYLTLNIKLEYLIGRGTGILTY 369
BLAST of EWM24526.1 vs. NCBI_GenBank
Match: gi|1009342081|emb|CRZ23924.1| (Bm6111 [Brugia malayi]) HSP 1 Score: 82.4185 bits (202), Expect = 5.771e-16 Identity = 38/73 (52.05%), Postives = 53/73 (72.60%), Query Frame = 0
Query: 2 LSHNITDGHVAHHLFFTQIPHYHLKDATAAVRQLLTPTGTYKKKQSWNFLGKFTELNYKLKYVAGQ--GVLSY 72
L H+ITDGHVAHH FFT+IPHYHL +AT A++ +L P Y+ K + +FL + LN KL+Y+ G+ G+L+Y
Sbjct: 290 LLHHITDGHVAHHFFFTKIPHYHLMEATTAIKSVLEPYKVYRCKSNADFLLDYLTLNIKLEYLIGRGTGILTY 362
BLAST of EWM24526.1 vs. NCBI_GenBank
Match: gi|312069608|ref|XP_003137761.1| (fatty acid desaturase [Loa loa] >gi|307767069|gb|EFO26303.1| fatty acid desaturase [Loa loa]) HSP 1 Score: 81.2629 bits (199), Expect = 1.586e-15 Identity = 37/71 (52.11%), Postives = 52/71 (73.24%), Query Frame = 0
Query: 4 HNITDGHVAHHLFFTQIPHYHLKDATAAVRQLLTPTGTYKKKQSWNFLGKFTELNYKLKYVAGQ--GVLSY 72
H+ITDGHVAHH FFT+IPHYHL +AT A++ +L P Y+ K + +FL + LN KL+Y+ G+ G+L+Y
Sbjct: 298 HHITDGHVAHHFFFTKIPHYHLMEATVAIKSVLEPYKAYRCKSNTDFLLDYLTLNIKLEYLIGRGTGILTY 368
BLAST of EWM24526.1 vs. NCBI_GenBank
Match: gi|298709121|emb|CBJ31067.1| (Fatty acid desaturase [Ectocarpus siliculosus]) HSP 1 Score: 78.5666 bits (192), Expect = 1.547e-14 Identity = 38/63 (60.32%), Postives = 45/63 (71.43%), Query Frame = 0
Query: 1 DLSHNITDGHVAHHLFFTQIPHYHLKDATAAVRQLLTPTGTYKKKQSWNFLGKFTELNYKLKY 63
D HNITDGHVAHHLFFT+IPHY+LK ATAA+R L G Y+ + + NFL F NYKL +
Sbjct: 262 DAHHNITDGHVAHHLFFTKIPHYNLKKATAAIRPSLEKLGLYRYRNNPNFLWVFARENYKLGF 324
BLAST of EWM24526.1 vs. NCBI_GenBank
Match: gi|802675401|gb|KKA68316.1| (hypothetical protein PRIPAC_12236, partial [Pristionchus pacificus]) HSP 1 Score: 76.6406 bits (187), Expect = 8.147e-14 Identity = 35/67 (52.24%), Postives = 49/67 (73.13%), Query Frame = 0
Query: 2 LSHNITDGHVAHHLFFTQIPHYHLKDATAAVRQLLTPTGTYKKKQSWNFLGKFTELNYKLKYVAGQG 68
L H+ITDGHVAHHLFFT IPHY+L ATA +++ L P G Y+ ++S +FL + L +L+Y+ G+G
Sbjct: 309 LMHHITDGHVAHHLFFTGIPHYNLMKATAVIKEKLEPYGVYRYQKSPDFLFQLAGLTNRLEYLVGEG 375 The following BLAST results are available for this feature:
BLAST of EWM24526.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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