EWM24548.1, cds6124 (CDS) Nannochloropsis gaditana

Overview
NameEWM24548.1
Unique Namecds6124
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:681040..681045 +
Alignment locationCM002467.1:681260..681740 +
Alignment locationCM002467.1:681955..682069 +
Alignment locationCM002467.1:682301..682595 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24548.1
ProductProtein of unknown function DUF1823
Orig transcript idgnl|cribi|Naga_100260g10.1404.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:681040..681045 +
CM002467.1supercontigCM002467.1:681260..681740 +
CM002467.1supercontigCM002467.1:681955..682069 +
CM002467.1supercontigCM002467.1:682301..682595 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR014952DUF1823
Homology
BLAST of EWM24548.1 vs. NCBI_GenBank
Match: gi|585106057|gb|EWM24548.1| (Protein of unknown function DUF1823 [Nannochloropsis gaditana])

HSP 1 Score: 615.535 bits (1586), Expect = 0.000e+0
Identity = 298/298 (100.00%), Postives = 298/298 (100.00%), Query Frame = 0
Query:    1 MYDELPWPEGKAIVHPSSSMSRDRQYRRAPTFFIFFHCLGLVSHGTRAFLLPRQPFLGFSQKLACWGSHPLTPSRRVSSALPLRAASDTGPTEGDSIPDPVPNSDNGIVVEGPIRADDTERFLVDISVPEPLAAELEETNLVKIVKLMCKDEEVNWLAWKCLGYRYVPTEGRWDNTRVFPKWRARYPDPPDLVGVTRIYEKEVDFPVKRANTALVRSVPKMYKQSLKELLAPYGFKGYKFAELTPNRTRRAQVCNWLLYYKRDLWGISLEDLLKAKETVTQVTREGESPEQLAKKMVY 298
            MYDELPWPEGKAIVHPSSSMSRDRQYRRAPTFFIFFHCLGLVSHGTRAFLLPRQPFLGFSQKLACWGSHPLTPSRRVSSALPLRAASDTGPTEGDSIPDPVPNSDNGIVVEGPIRADDTERFLVDISVPEPLAAELEETNLVKIVKLMCKDEEVNWLAWKCLGYRYVPTEGRWDNTRVFPKWRARYPDPPDLVGVTRIYEKEVDFPVKRANTALVRSVPKMYKQSLKELLAPYGFKGYKFAELTPNRTRRAQVCNWLLYYKRDLWGISLEDLLKAKETVTQVTREGESPEQLAKKMVY
Sbjct:    1 MYDELPWPEGKAIVHPSSSMSRDRQYRRAPTFFIFFHCLGLVSHGTRAFLLPRQPFLGFSQKLACWGSHPLTPSRRVSSALPLRAASDTGPTEGDSIPDPVPNSDNGIVVEGPIRADDTERFLVDISVPEPLAAELEETNLVKIVKLMCKDEEVNWLAWKCLGYRYVPTEGRWDNTRVFPKWRARYPDPPDLVGVTRIYEKEVDFPVKRANTALVRSVPKMYKQSLKELLAPYGFKGYKFAELTPNRTRRAQVCNWLLYYKRDLWGISLEDLLKAKETVTQVTREGESPEQLAKKMVY 298          
BLAST of EWM24548.1 vs. NCBI_GenBank
Match: gi|553182361|ref|XP_005853717.1| (hypothetical protein NGA_0501300 [Nannochloropsis gaditana CCMP526] >gi|422295342|gb|EKU22641.1| hypothetical protein NGA_0501300 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 570.466 bits (1469), Expect = 0.000e+0
Identity = 276/279 (98.92%), Postives = 278/279 (99.64%), Query Frame = 0
Query:   20 MSRDRQYRRAPTFFIFFHCLGLVSHGTRAFLLPRQPFLGFSQKLACWGSHPLTPSRRVSSALPLRAASDTGPTEGDSIPDPVPNSDNGIVVEGPIRADDTERFLVDISVPEPLAAELEETNLVKIVKLMCKDEEVNWLAWKCLGYRYVPTEGRWDNTRVFPKWRARYPDPPDLVGVTRIYEKEVDFPVKRANTALVRSVPKMYKQSLKELLAPYGFKGYKFAELTPNRTRRAQVCNWLLYYKRDLWGISLEDLLKAKETVTQVTREGESPEQLAKKMVY 298
            MSRDRQYRRAPTFFIFFHCLGLVSH TRAFLLPRQPFLGFSQKLACWGSHPLTPSRR+SSALPLRAASDTGPTEG+SIPDPVPNSDNGIVVEGPIRADDTERFLVDISVPEPLAAELEETNLVKIVKLMCKDEEVNWLAWKCLGYRYVPTEGRWDNTRVFPKWRARYPDPPDLVGVTRIYEKEVDFPVKRANTALVRSVPKMYKQSLKELLAPYGFKGYKFAELTPNRTRRAQVCNWLLYYKRDLWGISLEDLLKAKETVTQVTREGESPEQLAKKMVY
Sbjct:    1 MSRDRQYRRAPTFFIFFHCLGLVSHRTRAFLLPRQPFLGFSQKLACWGSHPLTPSRRISSALPLRAASDTGPTEGNSIPDPVPNSDNGIVVEGPIRADDTERFLVDISVPEPLAAELEETNLVKIVKLMCKDEEVNWLAWKCLGYRYVPTEGRWDNTRVFPKWRARYPDPPDLVGVTRIYEKEVDFPVKRANTALVRSVPKMYKQSLKELLAPYGFKGYKFAELTPNRTRRAQVCNWLLYYKRDLWGISLEDLLKAKETVTQVTREGESPEQLAKKMVY 279          
BLAST of EWM24548.1 vs. NCBI_GenBank
Match: gi|219127425|ref|XP_002183936.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404659|gb|EEC44605.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 189.119 bits (479), Expect = 1.133e-54
Identity = 92/190 (48.42%), Postives = 127/190 (66.84%), Query Frame = 0
Query:  101 VPNSDNGIVVEGPIRADDTERFLVDISVPEPLAAELEETNLVKIVKLMCKDEEVNWLAWKCLGYRYVPTEGRWDNTRVFPKWRARYPDPPDLVGVTRIYEKEVDFPVKRANTALVRSVPKMYKQSLKELLAPYGFKGYKFAELTPNRTRRAQVCNWLLYYKRDLWGISLEDLLKAKETVTQVTREGESPE 290
            +P +D   + EGP+  +D   F++     EP   EL   NL++I+++ C D EVN L WKCLGYR+ P    W+N + FPKW+ +YP PPDL+G+ RIY  E+D P  RAN A+VRS+P   KQSLK  L PYGF GY+FAELTPN+TRRAQ  NWLLY++ +L+G ++E+L K ++   +   EG+  E
Sbjct:  119 LPAADPNYMNEGPVGEND---FILSRD-GEPKELELSNENLLRILRVECSDLEVNTLVWKCLGYRFDPHANLWNNDKCFPKWKEKYPTPPDLIGMQRIYSPEIDKPSLRANQAIVRSIPVDNKQSLKTHLKPYGFTGYQFAELTPNKTRRAQCANWLLYFREELFGFTVEELRKRRQAKKEAG-EGQGDE 303          
BLAST of EWM24548.1 vs. NCBI_GenBank
Match: gi|1210517210|dbj|GAX23845.1| (hypothetical protein FisN_20Hh049 [Fistulifera solaris])

HSP 1 Score: 177.178 bits (448), Expect = 1.114e-50
Identity = 85/143 (59.44%), Postives = 103/143 (72.03%), Query Frame = 0
Query:  131 PLAAELEETNLVKIVKLMCKDEEVNWLAWKCLGYRYVPTEGRW-DNTRVFPKWRARYPDPPDLVGVTRIYEKEVDFPVKRANTALVRSVPKMYKQSLKELLAPYGFKGYKFAELTPNRTRRAQVCNWLLYYKRDLWGISLEDL 272
            P   EL   N+++IVK  C D EVN L WKCLGYRY   E  W DNT VFP WR +YP PPD +G+ R+YEKEVD P  RAN ALVRSVP   KQSLK  L P G+KGY++ ELTPN+TRRAQ  NWL++Y+ +L+G +LE+L
Sbjct:   88 PTLEELSNANMLQIVKCQCTDLEVNTLVWKCLGYRYDEKEQLWNDNTLVFPNWREKYPTPPDFLGMRRVYEKEVDQPSLRANQALVRSVPVHAKQSLKTALKPEGWKGYQYKELTPNKTRRAQCANWLIFYRNELFGYTLEEL 230          
BLAST of EWM24548.1 vs. NCBI_GenBank
Match: gi|1210522941|dbj|GAX18284.1| (hypothetical protein FisN_20Lh049 [Fistulifera solaris])

HSP 1 Score: 174.481 bits (441), Expect = 1.133e-49
Identity = 94/208 (45.19%), Postives = 125/208 (60.10%), Query Frame = 0
Query:   78 SSALPLRAASDTGPTEGDSIPDPVPNSDNGIVV------------EGPIRADDTERFLVDISVPEPLAAELEETNLVKIVKLMCKDEEVNWLAWKCLGYRYVPTEGRW-DNTRVFPKWRARYPDPPDLVGVTRIYEKEVDFPVKRANTALVRSVPKMYKQSLKELLAPYGFKGYKFAELTPNRTRRAQVCNWLLYYKRDLWGISLEDL 272
            +S LP   A+ +   +G++ P+P P  +  ++              GPI     +   V      P   EL   N+++IVK  C D EVN L WKCLGYRY   E  W DN  VFP WR +YP PPD +G+ R+YEK++D P  RAN ALVRSVP   KQSLK  L P G+KGY++ ELTPN+TRRAQ  NWL++Y+ +L+G +LE+L
Sbjct:   31 ASRLPTFVATQSSSADGEA-PEPQPEGELTVLKPYLPALDPMYMHRGPI----GQGTFVISRTGGPTLEELSNANMLQIVKCQCTDLEVNTLVWKCLGYRYDEKEQLWNDNALVFPNWREKYPTPPDFLGMRRVYEKDIDQPSLRANQALVRSVPVHAKQSLKTALKPEGWKGYQYKELTPNKTRRAQCANWLIFYRNELFGYTLEEL 233          
BLAST of EWM24548.1 vs. NCBI_GenBank
Match: gi|298715256|emb|CBJ27905.1| (Mitochondrial TOM complex subunit, Tom20 homolog [Ectocarpus siliculosus])

HSP 1 Score: 168.703 bits (426), Expect = 2.218e-47
Identity = 79/140 (56.43%), Postives = 97/140 (69.29%), Query Frame = 0
Query:  130 EPLAAELEETNLVKIVKLMCKDEEVNWLAWKCLGYRYVPTEGRWDNTRVFPKWRARYPDPPDLVGVTRIYEKEVDFPVKRANTALVRSVPKMYKQSLKELLAPYGFKGYKFAELTPNRTRRAQVCNWLLYYKRDLWGISL 269
            EP A EL   NL+KIV     DEEVN + WKCLGYRY   E  W   +VFP+W A YP+PPDL+GVTR+YEK VD PV +A  AL+R++P  +K+ + E L P GF G    ELTPNRTRRAQV N+LLY++  LWG+ L
Sbjct:   95 EPTAEELSNENLIKIVAEKSTDEEVNVVVWKCLGYRYDAGENAWKAVKVFPRWEAMYPEPPDLLGVTRVYEKSVDKPVLKAVQALIRAIPSEHKRCIVEQLRPIGFTGLTLDELTPNRTRRAQVTNFLLYFRDQLWGVPL 234          
BLAST of EWM24548.1 vs. NCBI_GenBank
Match: gi|224001406|ref|XP_002290375.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220973797|gb|EED92127.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 167.933 bits (424), Expect = 7.448e-47
Identity = 93/225 (41.33%), Postives = 131/225 (58.22%), Query Frame = 0
Query:   64 ACWGSHPLTPSRRV---SSALPLRAASD--TGPTEGDSIPDPVPNSDNG--------------IVVEGPIRADDTERFLVDISVPEPLAAELEETNLVKIVKLMCKDEEVNWLAWKCLGYRYVPTEGRWDNTRVFPKWRARYPDPPDLVGVTRIYEKEVDFPVKRANTALVRSVPKMYKQSLKELLAPYGFKGYKFAELTPNRTRRAQVCNWLLYYKRDLWGISL 269
             C    P + S RV   S +LP+ +A+D  +  T+ D    P+  + +G                V+GP+     E+F++  S P P   EL    ++KIVK  C D E N L WKCLGYR+      W    VFP W+ R+P PPDL+G+ R+YE+EVD P  R+N ALVRS+P   KQSLK  L P G+KG+++ ELTPN+TRRAQ  NWL++Y+ +L+G ++
Sbjct:   17 GCASFQPPSYSHRVRVRSISLPVLSATDDDSANTKTDDCCPPIDETSDGPDILKPFLPALDPKYSVKGPV---GEEKFVLTRSGP-PTKEELSNEQMLKIVKSECSDLEANTLVWKCLGYRFDEESEEWSPKEVFPNWKERFPTPPDLIGMRRVYEREVDQPSLRSNQALVRSIPPDNKQSLKTHLKPLGWKGFQYKELTPNKTRRAQCANWLIFYREELFGYTV 237          
BLAST of EWM24548.1 vs. NCBI_GenBank
Match: gi|397612744|gb|EJK61870.1| (hypothetical protein THAOC_17560 [Thalassiosira oceanica])

HSP 1 Score: 167.548 bits (423), Expect = 1.127e-46
Identity = 90/201 (44.78%), Postives = 118/201 (58.71%), Query Frame = 0
Query:   83 LRAASDTGPT----EGDSIPDP-----------VPNSDNGIVVEGPIRADDTERFLVDISVPEPLAAELEETNLVKIVKLMCKDEEVNWLAWKCLGYRYVPTEGRWDNTRVFPKWRARYPDPPDLVGVTRIYEKEVDFPVKRANTALVRSVPKMYKQSLKELLAPYGFKGYKFAELTPNRTRRAQVCNWLLYYKRDLWGIS 268
            LRA++  G T    EG+    P           +P  D     +G I A D   F++  S   P A EL    ++KIVK+ C D EVN L WKCLGYR+    G W    VFPKWR R+P PPD +G+ R+Y +EVD P   AN ALVRS+P   KQ++K  L P G+KGYK+  LTPN+TRRAQ  NWL++++ +L+G S
Sbjct:   53 LRASTGAGETTASIEGEDCACPEDDGPGVLQPYLPAMDPEYSSKGAIGAGD---FVISRS-GGPTAEELSNEQMLKIVKIECTDLEVNTLVWKCLGYRFDEGAGEWQPDEVFPKWRERFPTPPDFIGMQRVYSREVDQPSLHANQALVRSIPAENKQNIKAALTPLGWKGYKYKGLTPNKTRRAQCANWLVFFREELFGYS 249          
BLAST of EWM24548.1 vs. NCBI_GenBank
Match: gi|1072222559|gb|OEU07319.1| (DUF1823-domain-containing protein, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 149.828 bits (377), Expect = 1.933e-41
Identity = 76/145 (52.41%), Postives = 96/145 (66.21%), Query Frame = 0
Query:  135 ELEETNLVKIV--KLMCKDEEVNWLAWKCLGYRYVPTEGRWDNTRVFPKWRARYPDPPDLVGVTRIYEKEVDFPVKRANTALVRSVPKMYKQSLKELLAPYGFKGYKFAELTPNRTRRAQVCNWLLYYKRDLWGISLEDLLKAKE 277
            EL   NL +IV  +    D EVN L WKCLGYR+   +  W  T+VFPKW+ RYP PPDL+G+  IY KEVD    + N  L  SVP   KQSLK  L P GF GYK +ELTPN TRRAQ  NWLLYY+ +L+G +L++L++ ++
Sbjct:    2 ELTNENLYQIVVRRSNVTDLEVNTLVWKCLGYRFNKNDEIWTPTKVFPKWKERYPTPPDLIGMQHIYTKEVDRDNLKNNQRLTVSVPMENKQSLKTFLRPIGFTGYKISELTPNLTRRAQCTNWLLYYREELFGYTLDELIEKRK 146          
BLAST of EWM24548.1 vs. NCBI_GenBank
Match: gi|551643814|ref|XP_005824700.1| (hypothetical protein GUITHDRAFT_154910 [Guillardia theta CCMP2712] >gi|428168779|gb|EKX37720.1| hypothetical protein GUITHDRAFT_154910 [Guillardia theta CCMP2712])

HSP 1 Score: 149.828 bits (377), Expect = 8.542e-41
Identity = 80/176 (45.45%), Postives = 106/176 (60.23%), Query Frame = 0
Query:  122 FLVDISVPEPLAAELEETNLVKIVKLMCKDEEVNWLAWKCLGYRYVPTEGRWDNTRVFPKWRARYPDPPDLVGVTRIYEKEVDFPVKRANTALVRSVPKMYKQSLKELLAPYGFKGYKFAELTPNRTRRAQVCNWLLYYKRDLWGISLEDLLKAKETVTQVTREGESPEQLAKKMV 297
            F++D   PE    EL    L+ I++    D+ VN L WKCLGY     +G + N  VFPKWR +YP PPDL+GVTR Y  E+D P ++AN  LV S+P  YKQ +KE L P GF G+K  ELTPN+TRRAQ  NWLL+Y+  L G +++ L        +  R  E+   +A K+V
Sbjct:    5 FVLDTFDPEEEEDELSNERLLTIIRSETTDQFVNELVWKCLGYER-KEDGSYINDNVFPKWREKYPSPPDLIGVTRNYTYEIDRPCQKANQQLVASIPMKYKQGVKEHLRPLGFTGFKLEELTPNKTRRAQCVNWLLFYREALRGKTVDQL--------RAERAAETGNDVAPKVV 171          
The following BLAST results are available for this feature:
BLAST of EWM24548.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106057|gb|EWM24548.1|0.000e+0100.00Protein of unknown function DUF1823 [Nannochlorops... [more]
gi|553182361|ref|XP_005853717.1|0.000e+098.92hypothetical protein NGA_0501300 [Nannochloropsis ... [more]
gi|219127425|ref|XP_002183936.1|1.133e-5448.42predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210517210|dbj|GAX23845.1|1.114e-5059.44hypothetical protein FisN_20Hh049 [Fistulifera sol... [more]
gi|1210522941|dbj|GAX18284.1|1.133e-4945.19hypothetical protein FisN_20Lh049 [Fistulifera sol... [more]
gi|298715256|emb|CBJ27905.1|2.218e-4756.43Mitochondrial TOM complex subunit, Tom20 homolog [... [more]
gi|224001406|ref|XP_002290375.1|7.448e-4741.33predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|397612744|gb|EJK61870.1|1.127e-4644.78hypothetical protein THAOC_17560 [Thalassiosira oc... [more]
gi|1072222559|gb|OEU07319.1|1.933e-4152.41DUF1823-domain-containing protein, partial [Fragil... [more]
gi|551643814|ref|XP_005824700.1|8.542e-4145.45hypothetical protein GUITHDRAFT_154910 [Guillardia... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6139rna6139Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications