rna6139, rna6139 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6139
Unique Name	rna6139
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	930
Alignment location	CM002467.1:681040..682595 +

Link to JBrowse

Properties


Property Name	Value
Product	Protein of unknown function DUF1823
Orig transcript id	gnl\|cribi\|Naga_100260g10.1404.mrna
Orig protein id	gnl\|cribi\|Naga_100260g10.1404
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002467.1	supercontig	CM002467.1:681040..682595 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100260g10	gene5930	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6139	rna6139-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24548.1	cds6124	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002467.1:681040..682595+
coding sequence from alignment at CM002467.1:681040..682595+

mRNA sequence

>rna6139 ID=rna6139|Name=rna6139|organism=Nannochloropsis gaditana|type=mRNA|length=930bp
ATGAGGAGGGGGAGGGAAGAATGGAGGAGGAGGAGGAGGAGGAGGAGAAG
GAGGGTAGAGAGGGAGAAGAGGAGAAGGGGAGGAAGAAAGGACGAAGAGG
AGGAGGAGGAGGAGGGAAGTGAGGAGGAAAAGGAGGAGGAGGAAAGAAAG
GAAGAAGGGAAGAAGGAGGGGGGGGAAGATGGCGAGAAGGGAGGATGCAG
GGGCAAGCAGGAAGAAAGAGAAAAATGCTGGATGCTCCTTCTTTTGGCCT
TGATTGTGAAGGATACGAATCCAGGGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGACGACGAGGACCGAGTGGGAGAACGGAGGAGGGAGGAGAC
CGAGACACAATGGCTTCGAGTGGCCCTGGGCTGGATGAGGAGGATGCTGA
GGAGGAAAGCGGGGGGGGGGGGGAGGGAGGGAGGGTTCGAAGGGCACGGT
GTCAATAAAGGGGGCTGGCGGGAAGGGAGGGGAGGACGATGACTGTGAGG
AGGAGGCGTTCCTGCAAGAGCTGTATCACTGTACAGAGGCATGCGAGTCG
AGTGGACGATCGACGGCTGCACAGCTGACGGACGTGATAAGCGTGGCTGT
GCGGAGGTGGCTGTTGCGAGGGTTGATGGCAGGGATGGAGGGACGGGAGG
GGGGGGGGGCGTGGGTGGGCGATAAGGAGTGGGGGCGATATCGACAAGCA
GTTCGAAAGTCCTTAGGGCGTGCGCAGCTCTGAGGGAAGCCAAGGCGTGG
TGCGAGAGGGGCATGGAAATAATGTGATGATGAATCAGGAAGCAATGGCA
GGAATAGGTTCAAGATGGTTTCGTGTTTCTTGTGTAGGAATTCGGGTTGA
AAGATAGCAGGCAGCAAGAAGTCTCACCATCCCAGTGCCAGAGCGGCCCG
GGGCTTGGGTTGCTCGGAGTATGATGGAAG

protein sequence of rna6139

>rna6139-protein ID=rna6139-protein|Name=rna6139|organism=Nannochloropsis gaditana|type=polypeptide|length=298bp
MYDELPWPEGKAIVHPSSSMSRDRQYRRAPTFFIFFHCLGLVSHGTRAFL
LPRQPFLGFSQKLACWGSHPLTPSRRVSSALPLRAASDTGPTEGDSIPDP
VPNSDNGIVVEGPIRADDTERFLVDISVPEPLAAELEETNLVKIVKLMCK
DEEVNWLAWKCLGYRYVPTEGRWDNTRVFPKWRARYPDPPDLVGVTRIYE
KEVDFPVKRANTALVRSVPKMYKQSLKELLAPYGFKGYKFAELTPNRTRR
AQVCNWLLYYKRDLWGISLEDLLKAKETVTQVTREGESPEQLAKKMVY

mRNA from alignment at CM002467.1:681040..682595+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6139 ID=rna6139|Name=rna6139|organism=Nannochloropsis gaditana|type=mRNA|length=1556bp|location=Sequence derived from alignment at CM002467.1:681040..682595+ (Nannochloropsis gaditana)
ATGTATGTGTCAAAAAGTGCCTTTCATGttgagggtggagggggagtgcc
ggctgctgctgggggagaaaggatttTTAAGTAGGGTAGTACGTACTCCT
GTCTACGACGGATTACATTTTGTTTCCCTGTATACTCACCAGCCACGGCC
ATCTTTCTCCGTGTCAACACACCGATATGATGTACAGACGACTATCCTGG
CAAAGGACGCGGGTGATTAGGACGAGTTGCCCTGGCCTGAAGGCAAAGCT
ATCGTGCATCCATCTAGTAGCATGTCGAGGGACCGTCAATACAGGAGAGC
ACCAACGTTTTTCATCTTCTTTCACTGCCTGGGGCTGGTGTCACACGGCA
CTCgtgccttccttcttcctcggcagCCATTCCTGGGATTTTCTCAGAAA
CTTGCTTGTTGGGGCTCACATCCCCTCACGCCATCGCGCCGGGTCTCCTC
TGCTCTCCCCCTACGGGCCGCCAGTGACACAGGTCCTACAGAGGGAGATT
CTATACCTGACCCTGTCCCTAACTCAGACAATGGCATAGTTGTGGAAGGC
CCCATTCGGGCAGATGACACGGAGCGGTTTCTGGTGGACATCAGCGTACC
GGAGCCTTTGGCCGCCGAATTGGAGGAGACGAATTTGGTTAAAATTGTGA
AGCTAATGTgtaaagacgaggaggtaaACTGGCTAGCGTGGAAATGCCTC
GGTGAGCAGGGAAGGTCAAGGACAGCGAGAGTGTGCTTGTCTGCGTGTCG
TACGGACAGTAACGACAATATGGGAATGCAAGCAGAGGAAGATTTTGACA
CGTGACAATCCTTAGCCCCCATGTTACATGATGGATCCAGAAGTCCTGCC
TATCCAAAACGCTCAAGTAGCCTTGCAATCATCCTCGCTTGTACCCCCTA
TTTGTCTCCCCCCAGGCTACCGTTATGTGCCTACAGAGGGTCGGTGGGAC
AACACCCGCGTCTTCCCCAAATGGCGGGCACGATACCCGGATCCACCGGA
CCTTGTGGGGGTGACTCGCATCTACGAGAAGTACGTGGCGGGCCATGTGC
CTCATGAGAGGGTTGCAGGGCCTGGGGtgaagggggatgggggaggtaGG
ACGGATATTAAAAGCCGTTGGCGCGGAAATCACGAGCACACGCCACAGGC
ACTTGCCCTCCTAGTTGACCGCGTGACAAGCCAAACATTCTGTAGCCCTA
TCTAGATCATATTGGATGACCGgcatgcccttcctctccccccttgtcct
ccctggCACAGAGAGGTGGATTTCCCGGTCAAGCGCGCGAACACGGCCCT
CGTCCGCTCCGTCCCCAAGATGTACAAGCAGTCTTTGAAAGAGCTGCTGG
CTCCGTACGGTTTCAAAGGCTACAAGTTTGCGGAGCTCACGCCGAACCGG
ACACGGAGAGCGCAGGTCTGCAACTGGCTATTGTATTATAAGCGAGACCT
GTGGGGGATTTCTTTGGAAGACTTGTTGAAAGCCAAGGAGACGGTCACGC
AGGTGacgcgggaaggggaatcACCGGAGCAACTAGCAAAGAAGATGGTT
TATTGA

Coding sequence (CDS) from alignment at CM002467.1:681040..682595+

>rna6139 ID=rna6139|Name=rna6139|organism=Nannochloropsis gaditana|type=CDS|length=3588bp|location=Sequence derived from alignment at CM002467.1:681040..682595+ (Nannochloropsis gaditana)
ATGTATGACGAGTTGCCCTGGCCTGAAGGCAAAGCTATCGTGCATCCATC
TAGTAGCATGTCGAGGGACCGTCAATACAGGAGAGCACCAACGTTTTTCA
TCTTCTTTCACTGCCTGGGGCTGGTGTCACACGGCACTCgtgccttcctt
cttcctcggcagCCATTCCTGGGATTTTCTCAGAAACTTGCTTGTTGGGG
CTCACATCCCCTCACGCCATCGCGCCGGGTCTCCTCTGCTCTCCCCCTAC
GGGCCGCCAGTGACACAGGTCCTACAGAGGGAGATTCTATACCTGACCCT
GTCCCTAACTCAGACAATGGCATAGTTGTGGAAGGCCCCATTCGGGCAGA
TGACACGGAGCGGTTTCTGGTGGACATCAGCGTACCGGAGCCTTTGGCCG
CCGAATTGGAGGAGACGAATTTGGTTAAAATTGTGAAGCTAATGTgtaaa
gacgaggaggtaaACTGGCTAGCGTGGAAATGCCTCGGCTACCGTTATGT
GCCTACAGAGGGTCGGTGGGACAACACCCGCGTCTTCCCCAAATGGCGGG
CACGATACCCGGATCCACCGGACCTTGTGGGGGTGACTCGCATCTACGAG
AAAGAGGTGGATTTCCCGGTCAAGCGCGCGAACACGGCCCTCGTCCGCTC
CGTCCCCAAGATGTACAAGCAGTCTTTGAAAGAGCTGCTGGCTCCGTACG
GTTTCAAAGGCTACAAGTTTGCGGAGCTCACGCCGAACCGGACACGGAGA
GCGCAGGTCTGCAACTGGCTATTGTATTATAAGCGAGACCTGTGGGGGAT
TTCTTTGGAAGACTTGTTGAAAGCCAAGGAGACGGTCACGCAGGTGacgc
gggaaggggaatcACCGGAGCAACTAGCAAAGAAGATGGTTTATTGAATG
TATGACGAGTTGCCCTGGCCTGAAGGCAAAGCTATCGTGCATCCATCTAG
TAGCATGTCGAGGGACCGTCAATACAGGAGAGCACCAACGTTTTTCATCT
TCTTTCACTGCCTGGGGCTGGTGTCACACGGCACTCgtgccttccttctt
cctcggcagCCATTCCTGGGATTTTCTCAGAAACTTGCTTGTTGGGGCTC
ACATCCCCTCACGCCATCGCGCCGGGTCTCCTCTGCTCTCCCCCTACGGG
CCGCCAGTGACACAGGTCCTACAGAGGGAGATTCTATACCTGACCCTGTC
CCTAACTCAGACAATGGCATAGTTGTGGAAGGCCCCATTCGGGCAGATGA
CACGGAGCGGTTTCTGGTGGACATCAGCGTACCGGAGCCTTTGGCCGCCG
AATTGGAGGAGACGAATTTGGTTAAAATTGTGAAGCTAATGTgtaaagac
gaggaggtaaACTGGCTAGCGTGGAAATGCCTCGGCTACCGTTATGTGCC
TACAGAGGGTCGGTGGGACAACACCCGCGTCTTCCCCAAATGGCGGGCAC
GATACCCGGATCCACCGGACCTTGTGGGGGTGACTCGCATCTACGAGAAA
GAGGTGGATTTCCCGGTCAAGCGCGCGAACACGGCCCTCGTCCGCTCCGT
CCCCAAGATGTACAAGCAGTCTTTGAAAGAGCTGCTGGCTCCGTACGGTT
TCAAAGGCTACAAGTTTGCGGAGCTCACGCCGAACCGGACACGGAGAGCG
CAGGTCTGCAACTGGCTATTGTATTATAAGCGAGACCTGTGGGGGATTTC
TTTGGAAGACTTGTTGAAAGCCAAGGAGACGGTCACGCAGGTGacgcggg
aaggggaatcACCGGAGCAACTAGCAAAGAAGATGGTTTATTGAATGTAT
GACGAGTTGCCCTGGCCTGAAGGCAAAGCTATCGTGCATCCATCTAGTAG
CATGTCGAGGGACCGTCAATACAGGAGAGCACCAACGTTTTTCATCTTCT
TTCACTGCCTGGGGCTGGTGTCACACGGCACTCgtgccttccttcttcct
cggcagCCATTCCTGGGATTTTCTCAGAAACTTGCTTGTTGGGGCTCACA
TCCCCTCACGCCATCGCGCCGGGTCTCCTCTGCTCTCCCCCTACGGGCCG
CCAGTGACACAGGTCCTACAGAGGGAGATTCTATACCTGACCCTGTCCCT
AACTCAGACAATGGCATAGTTGTGGAAGGCCCCATTCGGGCAGATGACAC
GGAGCGGTTTCTGGTGGACATCAGCGTACCGGAGCCTTTGGCCGCCGAAT
TGGAGGAGACGAATTTGGTTAAAATTGTGAAGCTAATGTgtaaagacgag
gaggtaaACTGGCTAGCGTGGAAATGCCTCGGCTACCGTTATGTGCCTAC
AGAGGGTCGGTGGGACAACACCCGCGTCTTCCCCAAATGGCGGGCACGAT
ACCCGGATCCACCGGACCTTGTGGGGGTGACTCGCATCTACGAGAAAGAG
GTGGATTTCCCGGTCAAGCGCGCGAACACGGCCCTCGTCCGCTCCGTCCC
CAAGATGTACAAGCAGTCTTTGAAAGAGCTGCTGGCTCCGTACGGTTTCA
AAGGCTACAAGTTTGCGGAGCTCACGCCGAACCGGACACGGAGAGCGCAG
GTCTGCAACTGGCTATTGTATTATAAGCGAGACCTGTGGGGGATTTCTTT
GGAAGACTTGTTGAAAGCCAAGGAGACGGTCACGCAGGTGacgcgggaag
gggaatcACCGGAGCAACTAGCAAAGAAGATGGTTTATTGAATGTATGAC
GAGTTGCCCTGGCCTGAAGGCAAAGCTATCGTGCATCCATCTAGTAGCAT
GTCGAGGGACCGTCAATACAGGAGAGCACCAACGTTTTTCATCTTCTTTC
ACTGCCTGGGGCTGGTGTCACACGGCACTCgtgccttccttcttcctcgg
cagCCATTCCTGGGATTTTCTCAGAAACTTGCTTGTTGGGGCTCACATCC
CCTCACGCCATCGCGCCGGGTCTCCTCTGCTCTCCCCCTACGGGCCGCCA
GTGACACAGGTCCTACAGAGGGAGATTCTATACCTGACCCTGTCCCTAAC
TCAGACAATGGCATAGTTGTGGAAGGCCCCATTCGGGCAGATGACACGGA
GCGGTTTCTGGTGGACATCAGCGTACCGGAGCCTTTGGCCGCCGAATTGG
AGGAGACGAATTTGGTTAAAATTGTGAAGCTAATGTgtaaagacgaggag
gtaaACTGGCTAGCGTGGAAATGCCTCGGCTACCGTTATGTGCCTACAGA
GGGTCGGTGGGACAACACCCGCGTCTTCCCCAAATGGCGGGCACGATACC
CGGATCCACCGGACCTTGTGGGGGTGACTCGCATCTACGAGAAAGAGGTG
GATTTCCCGGTCAAGCGCGCGAACACGGCCCTCGTCCGCTCCGTCCCCAA
GATGTACAAGCAGTCTTTGAAAGAGCTGCTGGCTCCGTACGGTTTCAAAG
GCTACAAGTTTGCGGAGCTCACGCCGAACCGGACACGGAGAGCGCAGGTC
TGCAACTGGCTATTGTATTATAAGCGAGACCTGTGGGGGATTTCTTTGGA
AGACTTGTTGAAAGCCAAGGAGACGGTCACGCAGGTGacgcgggaagggg
aatcACCGGAGCAACTAGCAAAGAAGATGGTTTATTGA

Synonyms

Publications