EWM24548.1, cds6124 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24548.1 vs. NCBI_GenBank
Match: gi|585106057|gb|EWM24548.1| (Protein of unknown function DUF1823 [Nannochloropsis gaditana]) HSP 1 Score: 615.535 bits (1586), Expect = 0.000e+0 Identity = 298/298 (100.00%), Postives = 298/298 (100.00%), Query Frame = 0
Query: 1 MYDELPWPEGKAIVHPSSSMSRDRQYRRAPTFFIFFHCLGLVSHGTRAFLLPRQPFLGFSQKLACWGSHPLTPSRRVSSALPLRAASDTGPTEGDSIPDPVPNSDNGIVVEGPIRADDTERFLVDISVPEPLAAELEETNLVKIVKLMCKDEEVNWLAWKCLGYRYVPTEGRWDNTRVFPKWRARYPDPPDLVGVTRIYEKEVDFPVKRANTALVRSVPKMYKQSLKELLAPYGFKGYKFAELTPNRTRRAQVCNWLLYYKRDLWGISLEDLLKAKETVTQVTREGESPEQLAKKMVY 298
MYDELPWPEGKAIVHPSSSMSRDRQYRRAPTFFIFFHCLGLVSHGTRAFLLPRQPFLGFSQKLACWGSHPLTPSRRVSSALPLRAASDTGPTEGDSIPDPVPNSDNGIVVEGPIRADDTERFLVDISVPEPLAAELEETNLVKIVKLMCKDEEVNWLAWKCLGYRYVPTEGRWDNTRVFPKWRARYPDPPDLVGVTRIYEKEVDFPVKRANTALVRSVPKMYKQSLKELLAPYGFKGYKFAELTPNRTRRAQVCNWLLYYKRDLWGISLEDLLKAKETVTQVTREGESPEQLAKKMVY
Sbjct: 1 MYDELPWPEGKAIVHPSSSMSRDRQYRRAPTFFIFFHCLGLVSHGTRAFLLPRQPFLGFSQKLACWGSHPLTPSRRVSSALPLRAASDTGPTEGDSIPDPVPNSDNGIVVEGPIRADDTERFLVDISVPEPLAAELEETNLVKIVKLMCKDEEVNWLAWKCLGYRYVPTEGRWDNTRVFPKWRARYPDPPDLVGVTRIYEKEVDFPVKRANTALVRSVPKMYKQSLKELLAPYGFKGYKFAELTPNRTRRAQVCNWLLYYKRDLWGISLEDLLKAKETVTQVTREGESPEQLAKKMVY 298
BLAST of EWM24548.1 vs. NCBI_GenBank
Match: gi|553182361|ref|XP_005853717.1| (hypothetical protein NGA_0501300 [Nannochloropsis gaditana CCMP526] >gi|422295342|gb|EKU22641.1| hypothetical protein NGA_0501300 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 570.466 bits (1469), Expect = 0.000e+0 Identity = 276/279 (98.92%), Postives = 278/279 (99.64%), Query Frame = 0
Query: 20 MSRDRQYRRAPTFFIFFHCLGLVSHGTRAFLLPRQPFLGFSQKLACWGSHPLTPSRRVSSALPLRAASDTGPTEGDSIPDPVPNSDNGIVVEGPIRADDTERFLVDISVPEPLAAELEETNLVKIVKLMCKDEEVNWLAWKCLGYRYVPTEGRWDNTRVFPKWRARYPDPPDLVGVTRIYEKEVDFPVKRANTALVRSVPKMYKQSLKELLAPYGFKGYKFAELTPNRTRRAQVCNWLLYYKRDLWGISLEDLLKAKETVTQVTREGESPEQLAKKMVY 298
MSRDRQYRRAPTFFIFFHCLGLVSH TRAFLLPRQPFLGFSQKLACWGSHPLTPSRR+SSALPLRAASDTGPTEG+SIPDPVPNSDNGIVVEGPIRADDTERFLVDISVPEPLAAELEETNLVKIVKLMCKDEEVNWLAWKCLGYRYVPTEGRWDNTRVFPKWRARYPDPPDLVGVTRIYEKEVDFPVKRANTALVRSVPKMYKQSLKELLAPYGFKGYKFAELTPNRTRRAQVCNWLLYYKRDLWGISLEDLLKAKETVTQVTREGESPEQLAKKMVY
Sbjct: 1 MSRDRQYRRAPTFFIFFHCLGLVSHRTRAFLLPRQPFLGFSQKLACWGSHPLTPSRRISSALPLRAASDTGPTEGNSIPDPVPNSDNGIVVEGPIRADDTERFLVDISVPEPLAAELEETNLVKIVKLMCKDEEVNWLAWKCLGYRYVPTEGRWDNTRVFPKWRARYPDPPDLVGVTRIYEKEVDFPVKRANTALVRSVPKMYKQSLKELLAPYGFKGYKFAELTPNRTRRAQVCNWLLYYKRDLWGISLEDLLKAKETVTQVTREGESPEQLAKKMVY 279
BLAST of EWM24548.1 vs. NCBI_GenBank
Match: gi|219127425|ref|XP_002183936.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404659|gb|EEC44605.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 189.119 bits (479), Expect = 1.133e-54 Identity = 92/190 (48.42%), Postives = 127/190 (66.84%), Query Frame = 0
Query: 101 VPNSDNGIVVEGPIRADDTERFLVDISVPEPLAAELEETNLVKIVKLMCKDEEVNWLAWKCLGYRYVPTEGRWDNTRVFPKWRARYPDPPDLVGVTRIYEKEVDFPVKRANTALVRSVPKMYKQSLKELLAPYGFKGYKFAELTPNRTRRAQVCNWLLYYKRDLWGISLEDLLKAKETVTQVTREGESPE 290
+P +D + EGP+ +D F++ EP EL NL++I+++ C D EVN L WKCLGYR+ P W+N + FPKW+ +YP PPDL+G+ RIY E+D P RAN A+VRS+P KQSLK L PYGF GY+FAELTPN+TRRAQ NWLLY++ +L+G ++E+L K ++ + EG+ E
Sbjct: 119 LPAADPNYMNEGPVGEND---FILSRD-GEPKELELSNENLLRILRVECSDLEVNTLVWKCLGYRFDPHANLWNNDKCFPKWKEKYPTPPDLIGMQRIYSPEIDKPSLRANQAIVRSIPVDNKQSLKTHLKPYGFTGYQFAELTPNKTRRAQCANWLLYFREELFGFTVEELRKRRQAKKEAG-EGQGDE 303
BLAST of EWM24548.1 vs. NCBI_GenBank
Match: gi|1210517210|dbj|GAX23845.1| (hypothetical protein FisN_20Hh049 [Fistulifera solaris]) HSP 1 Score: 177.178 bits (448), Expect = 1.114e-50 Identity = 85/143 (59.44%), Postives = 103/143 (72.03%), Query Frame = 0
Query: 131 PLAAELEETNLVKIVKLMCKDEEVNWLAWKCLGYRYVPTEGRW-DNTRVFPKWRARYPDPPDLVGVTRIYEKEVDFPVKRANTALVRSVPKMYKQSLKELLAPYGFKGYKFAELTPNRTRRAQVCNWLLYYKRDLWGISLEDL 272
P EL N+++IVK C D EVN L WKCLGYRY E W DNT VFP WR +YP PPD +G+ R+YEKEVD P RAN ALVRSVP KQSLK L P G+KGY++ ELTPN+TRRAQ NWL++Y+ +L+G +LE+L
Sbjct: 88 PTLEELSNANMLQIVKCQCTDLEVNTLVWKCLGYRYDEKEQLWNDNTLVFPNWREKYPTPPDFLGMRRVYEKEVDQPSLRANQALVRSVPVHAKQSLKTALKPEGWKGYQYKELTPNKTRRAQCANWLIFYRNELFGYTLEEL 230
BLAST of EWM24548.1 vs. NCBI_GenBank
Match: gi|1210522941|dbj|GAX18284.1| (hypothetical protein FisN_20Lh049 [Fistulifera solaris]) HSP 1 Score: 174.481 bits (441), Expect = 1.133e-49 Identity = 94/208 (45.19%), Postives = 125/208 (60.10%), Query Frame = 0
Query: 78 SSALPLRAASDTGPTEGDSIPDPVPNSDNGIVV------------EGPIRADDTERFLVDISVPEPLAAELEETNLVKIVKLMCKDEEVNWLAWKCLGYRYVPTEGRW-DNTRVFPKWRARYPDPPDLVGVTRIYEKEVDFPVKRANTALVRSVPKMYKQSLKELLAPYGFKGYKFAELTPNRTRRAQVCNWLLYYKRDLWGISLEDL 272
+S LP A+ + +G++ P+P P + ++ GPI + V P EL N+++IVK C D EVN L WKCLGYRY E W DN VFP WR +YP PPD +G+ R+YEK++D P RAN ALVRSVP KQSLK L P G+KGY++ ELTPN+TRRAQ NWL++Y+ +L+G +LE+L
Sbjct: 31 ASRLPTFVATQSSSADGEA-PEPQPEGELTVLKPYLPALDPMYMHRGPI----GQGTFVISRTGGPTLEELSNANMLQIVKCQCTDLEVNTLVWKCLGYRYDEKEQLWNDNALVFPNWREKYPTPPDFLGMRRVYEKDIDQPSLRANQALVRSVPVHAKQSLKTALKPEGWKGYQYKELTPNKTRRAQCANWLIFYRNELFGYTLEEL 233
BLAST of EWM24548.1 vs. NCBI_GenBank
Match: gi|298715256|emb|CBJ27905.1| (Mitochondrial TOM complex subunit, Tom20 homolog [Ectocarpus siliculosus]) HSP 1 Score: 168.703 bits (426), Expect = 2.218e-47 Identity = 79/140 (56.43%), Postives = 97/140 (69.29%), Query Frame = 0
Query: 130 EPLAAELEETNLVKIVKLMCKDEEVNWLAWKCLGYRYVPTEGRWDNTRVFPKWRARYPDPPDLVGVTRIYEKEVDFPVKRANTALVRSVPKMYKQSLKELLAPYGFKGYKFAELTPNRTRRAQVCNWLLYYKRDLWGISL 269
EP A EL NL+KIV DEEVN + WKCLGYRY E W +VFP+W A YP+PPDL+GVTR+YEK VD PV +A AL+R++P +K+ + E L P GF G ELTPNRTRRAQV N+LLY++ LWG+ L
Sbjct: 95 EPTAEELSNENLIKIVAEKSTDEEVNVVVWKCLGYRYDAGENAWKAVKVFPRWEAMYPEPPDLLGVTRVYEKSVDKPVLKAVQALIRAIPSEHKRCIVEQLRPIGFTGLTLDELTPNRTRRAQVTNFLLYFRDQLWGVPL 234
BLAST of EWM24548.1 vs. NCBI_GenBank
Match: gi|224001406|ref|XP_002290375.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220973797|gb|EED92127.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 167.933 bits (424), Expect = 7.448e-47 Identity = 93/225 (41.33%), Postives = 131/225 (58.22%), Query Frame = 0
Query: 64 ACWGSHPLTPSRRV---SSALPLRAASD--TGPTEGDSIPDPVPNSDNG--------------IVVEGPIRADDTERFLVDISVPEPLAAELEETNLVKIVKLMCKDEEVNWLAWKCLGYRYVPTEGRWDNTRVFPKWRARYPDPPDLVGVTRIYEKEVDFPVKRANTALVRSVPKMYKQSLKELLAPYGFKGYKFAELTPNRTRRAQVCNWLLYYKRDLWGISL 269
C P + S RV S +LP+ +A+D + T+ D P+ + +G V+GP+ E+F++ S P P EL ++KIVK C D E N L WKCLGYR+ W VFP W+ R+P PPDL+G+ R+YE+EVD P R+N ALVRS+P KQSLK L P G+KG+++ ELTPN+TRRAQ NWL++Y+ +L+G ++
Sbjct: 17 GCASFQPPSYSHRVRVRSISLPVLSATDDDSANTKTDDCCPPIDETSDGPDILKPFLPALDPKYSVKGPV---GEEKFVLTRSGP-PTKEELSNEQMLKIVKSECSDLEANTLVWKCLGYRFDEESEEWSPKEVFPNWKERFPTPPDLIGMRRVYEREVDQPSLRSNQALVRSIPPDNKQSLKTHLKPLGWKGFQYKELTPNKTRRAQCANWLIFYREELFGYTV 237
BLAST of EWM24548.1 vs. NCBI_GenBank
Match: gi|397612744|gb|EJK61870.1| (hypothetical protein THAOC_17560 [Thalassiosira oceanica]) HSP 1 Score: 167.548 bits (423), Expect = 1.127e-46 Identity = 90/201 (44.78%), Postives = 118/201 (58.71%), Query Frame = 0
Query: 83 LRAASDTGPT----EGDSIPDP-----------VPNSDNGIVVEGPIRADDTERFLVDISVPEPLAAELEETNLVKIVKLMCKDEEVNWLAWKCLGYRYVPTEGRWDNTRVFPKWRARYPDPPDLVGVTRIYEKEVDFPVKRANTALVRSVPKMYKQSLKELLAPYGFKGYKFAELTPNRTRRAQVCNWLLYYKRDLWGIS 268
LRA++ G T EG+ P +P D +G I A D F++ S P A EL ++KIVK+ C D EVN L WKCLGYR+ G W VFPKWR R+P PPD +G+ R+Y +EVD P AN ALVRS+P KQ++K L P G+KGYK+ LTPN+TRRAQ NWL++++ +L+G S
Sbjct: 53 LRASTGAGETTASIEGEDCACPEDDGPGVLQPYLPAMDPEYSSKGAIGAGD---FVISRS-GGPTAEELSNEQMLKIVKIECTDLEVNTLVWKCLGYRFDEGAGEWQPDEVFPKWRERFPTPPDFIGMQRVYSREVDQPSLHANQALVRSIPAENKQNIKAALTPLGWKGYKYKGLTPNKTRRAQCANWLVFFREELFGYS 249
BLAST of EWM24548.1 vs. NCBI_GenBank
Match: gi|1072222559|gb|OEU07319.1| (DUF1823-domain-containing protein, partial [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 149.828 bits (377), Expect = 1.933e-41 Identity = 76/145 (52.41%), Postives = 96/145 (66.21%), Query Frame = 0
Query: 135 ELEETNLVKIV--KLMCKDEEVNWLAWKCLGYRYVPTEGRWDNTRVFPKWRARYPDPPDLVGVTRIYEKEVDFPVKRANTALVRSVPKMYKQSLKELLAPYGFKGYKFAELTPNRTRRAQVCNWLLYYKRDLWGISLEDLLKAKE 277
EL NL +IV + D EVN L WKCLGYR+ + W T+VFPKW+ RYP PPDL+G+ IY KEVD + N L SVP KQSLK L P GF GYK +ELTPN TRRAQ NWLLYY+ +L+G +L++L++ ++
Sbjct: 2 ELTNENLYQIVVRRSNVTDLEVNTLVWKCLGYRFNKNDEIWTPTKVFPKWKERYPTPPDLIGMQHIYTKEVDRDNLKNNQRLTVSVPMENKQSLKTFLRPIGFTGYKISELTPNLTRRAQCTNWLLYYREELFGYTLDELIEKRK 146
BLAST of EWM24548.1 vs. NCBI_GenBank
Match: gi|551643814|ref|XP_005824700.1| (hypothetical protein GUITHDRAFT_154910 [Guillardia theta CCMP2712] >gi|428168779|gb|EKX37720.1| hypothetical protein GUITHDRAFT_154910 [Guillardia theta CCMP2712]) HSP 1 Score: 149.828 bits (377), Expect = 8.542e-41 Identity = 80/176 (45.45%), Postives = 106/176 (60.23%), Query Frame = 0
Query: 122 FLVDISVPEPLAAELEETNLVKIVKLMCKDEEVNWLAWKCLGYRYVPTEGRWDNTRVFPKWRARYPDPPDLVGVTRIYEKEVDFPVKRANTALVRSVPKMYKQSLKELLAPYGFKGYKFAELTPNRTRRAQVCNWLLYYKRDLWGISLEDLLKAKETVTQVTREGESPEQLAKKMV 297
F++D PE EL L+ I++ D+ VN L WKCLGY +G + N VFPKWR +YP PPDL+GVTR Y E+D P ++AN LV S+P YKQ +KE L P GF G+K ELTPN+TRRAQ NWLL+Y+ L G +++ L + R E+ +A K+V
Sbjct: 5 FVLDTFDPEEEEDELSNERLLTIIRSETTDQFVNELVWKCLGYER-KEDGSYINDNVFPKWREKYPSPPDLIGVTRNYTYEIDRPCQKANQQLVASIPMKYKQGVKEHLRPLGFTGFKLEELTPNKTRRAQCVNWLLFYREALRGKTVDQL--------RAERAAETGNDVAPKVV 171 The following BLAST results are available for this feature:
BLAST of EWM24548.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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