EWM24583.1, cds6094 (CDS) Nannochloropsis gaditana

Overview
NameEWM24583.1
Unique Namecds6094
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:590783..590822 +
Alignment locationCM002467.1:590938..591425 +
Alignment locationCM002467.1:591692..591859 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24583.1
Productmethyltransferase type 11
Orig transcript idgnl|cribi|Naga_100062g26.906.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:590783..590822 +
CM002467.1supercontigCM002467.1:590938..591425 +
CM002467.1supercontigCM002467.1:591692..591859 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR029063SAM-dependent_MTases
IPR025714Methyltranfer_dom
Homology
BLAST of EWM24583.1 vs. NCBI_GenBank
Match: gi|585106099|gb|EWM24583.1| (methyltransferase type 11 [Nannochloropsis gaditana])

HSP 1 Score: 474.552 bits (1220), Expect = 2.544e-169
Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 0
Query:    1 MAEPKEGTVTFDRDHYPEGLNANFLVSDAEALEAKYSGAKGLFTDPETRDIARNVPDILEALGDLKGKQIVDLGSGTGLFLNFLDAAVGPKGHVYAVEISPGFVELLRKKKEDEGLSNTSIVLGNTTNSELPADLKVDMVLLIDVYHHIEYVQTYMTKVREGMRTGAELVLIDFHRIPEKIWSHPPEWVLSHVRAGQDVFRAELEQAGFVFQREVTLPKLQENYFMIFTNP 231
            MAEPKEGTVTFDRDHYPEGLNANFLVSDAEALEAKYSGAKGLFTDPETRDIARNVPDILEALGDLKGKQIVDLGSGTGLFLNFLDAAVGPKGHVYAVEISPGFVELLRKKKEDEGLSNTSIVLGNTTNSELPADLKVDMVLLIDVYHHIEYVQTYMTKVREGMRTGAELVLIDFHRIPEKIWSHPPEWVLSHVRAGQDVFRAELEQAGFVFQREVTLPKLQENYFMIFTNP
Sbjct:    1 MAEPKEGTVTFDRDHYPEGLNANFLVSDAEALEAKYSGAKGLFTDPETRDIARNVPDILEALGDLKGKQIVDLGSGTGLFLNFLDAAVGPKGHVYAVEISPGFVELLRKKKEDEGLSNTSIVLGNTTNSELPADLKVDMVLLIDVYHHIEYVQTYMTKVREGMRTGAELVLIDFHRIPEKIWSHPPEWVLSHVRAGQDVFRAELEQAGFVFQREVTLPKLQENYFMIFTNP 231          
BLAST of EWM24583.1 vs. NCBI_GenBank
Match: gi|585106100|gb|EWM24584.1| (methyltransferase type 11 [Nannochloropsis gaditana])

HSP 1 Score: 360.147 bits (923), Expect = 7.199e-125
Identity = 177/181 (97.79%), Postives = 179/181 (98.90%), Query Frame = 0
Query:    1 MAEPKEGTVTFDRDHYPEGLNANFLVSDAEALEAKYSGAKGLFTDPETRDIARNVPDILEALGDLKGKQIVDLGSGTGLFLNFLDAAVGPKGHVYAVEISPGFVELLRKKKEDEGLSNTSIVLGNTTNSELPADLKVDMVLLIDVYHHIEYVQTYMTKVREGMRTGAELVLIDFHRIPEKI 181
            MAEPKEGTVTFDRDHYPEGLNANFLVSDAEALEAKYSGAKGLFTDPETRDIARNVPDILEALGDLKGKQIVDLGSGTGLFLNFLDAAVGPKGHVYAVEISPGFVELLRKKKEDEGLSNTSIVLGNTTNSELPADLKVDMVLLIDVYHHIEYVQTYMTKVREGMRTGAELVLIDFHR+  K+
Sbjct:    1 MAEPKEGTVTFDRDHYPEGLNANFLVSDAEALEAKYSGAKGLFTDPETRDIARNVPDILEALGDLKGKQIVDLGSGTGLFLNFLDAAVGPKGHVYAVEISPGFVELLRKKKEDEGLSNTSIVLGNTTNSELPADLKVDMVLLIDVYHHIEYVQTYMTKVREGMRTGAELVLIDFHRVSIKL 181          
BLAST of EWM24583.1 vs. NCBI_GenBank
Match: gi|873230410|emb|CEM11033.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 211.075 bits (536), Expect = 3.451e-65
Identity = 109/232 (46.98%), Postives = 149/232 (64.22%), Query Frame = 0
Query:    6 EGTVTFDRDHYPEGLNANFLVSDAEALEAKYSGAKGLFTDPETRDIARNVPDILEALGD----LKGKQIVDLGSGTGLFLNFLDAAVGPKGHVYAVEISPGFVELLRKKKEDEGLSNTSIVLGNTTNSELPADLK--VDMVLLIDVYHHIEYVQTYMTKVREGM---RTGAELVLIDFHRIPEKIWSHPPEWVLSHVRAGQDVFRAELEQAGFVFQREVTLPKLQENYFMIF 228
            E    F+  HYP+G+NANF+ S  E L+ KY    GLF DPE RDIA+    IL+AL        G  +VD+G+GTGLFL    A +G +G +YA E+S GF+ LL +  ++EGL+N   V  + T+ +LP   K   D+V + DVYHH EY +T++  + + +    TG  LV+IDFHRIPEKIWS PPEWVL HVRAGQD F+ E+E++GF +  +V +  ++ENY M F
Sbjct:    2 ESPAVFNASHYPDGVNANFVNSTEEQLKEKYGNGSGLFEDPEQRDIAKCKDAILKALRQHCHLSPGCCLVDVGAGTGLFLKDFSAIIGNQGSIYACELSDGFLGLLERLCDEEGLTNVITVKTSDTSLQLPESAKRAADLVFICDVYHHFEYPRTFIRHIADDVIKPDTGL-LVVIDFHRIPEKIWSRPPEWVLDHVRAGQDTFKQEIEESGFEYLSDVEVEGMRENYMMTF 232          
BLAST of EWM24583.1 vs. NCBI_GenBank
Match: gi|1180213669|ref|WP_083732515.1| (hypothetical protein [Fuerstia marisgermanicae])

HSP 1 Score: 153.68 bits (387), Expect = 3.030e-41
Identity = 83/217 (38.25%), Postives = 129/217 (59.45%), Query Frame = 0
Query:   17 PEGLNANFLVSDAEALE--AKYSGAKGLFTDPETRDIARNVPDILEALGDLKGKQIVDLGSGTGLFLNFLDAAVGPKGHVYAVEISPGFVELLRKKKEDEGLSNTSIVLGNTTNSELPADLKVDMVLLIDVYHHIEYVQTYMTKVREGMRTGAELVLIDFHRIPEKIWSHPPEWVLSHVRAGQDVFRAELEQAGFVFQREVTLPKLQENYFMIFTNP 231
            P+G+N +FL  D +  E   ++        + E+R++      IL+A+G   G  I D+GSGTGL++      VG +G VYAV+ISP  V+ +R++ + E L N  +V  +  +++L  D KVD V + D YHH EY ++ +  + + ++ G EL+LIDF+RIP        EWV++HVRA +  F+AE+E AGF F  EV +P+ +ENY + F  P
Sbjct:  179 PDGINDSFLDPDLDPSEWVNRF--------EIESREVFAARGSILKAVGLKPGMSIADIGSGTGLYVGLFSKEVGTEGRVYAVDISPRLVDFVRRRVKAEELHNVEVVQSDEKSAKL-GDRKVDRVFVCDTYHHFEYYESMLASIMDALKPGGELILIDFNRIPGTSR----EWVVNHVRADKQTFQAEVEAAGFEFIDEVRIPEFKENYLLRFRKP 382          
BLAST of EWM24583.1 vs. NCBI_GenBank
Match: gi|1140106012|gb|APZ90569.1| (Ubiquinone/menaquinone biosynthesis methyltransferase ubiE [Fuerstia marisgermanicae])

HSP 1 Score: 153.68 bits (387), Expect = 3.862e-39
Identity = 84/215 (39.07%), Postives = 128/215 (59.53%), Query Frame = 0
Query:   17 PEGLNANFLVSDAEALEAKYSGAKGLFTDPETRDIARNVPDILEALGDLKGKQIVDLGSGTGLFLNFLDAAVGPKGHVYAVEISPGFVELLRKKKEDEGLSNTSIVLGNTTNSELPADLKVDMVLLIDVYHHIEYVQTYMTKVREGMRTGAELVLIDFHRIPEKIWSHPPEWVLSHVRAGQDVFRAELEQAGFVFQREVTLPKLQENYFMIFTNP 231
            P+G+N +FL  D +  E         F + E+R++      IL+A+G   G  I D+GSGTGL++      VG +G VYAV+ISP  V+ +R++ + E L N  +V  +  +++L  D KVD V + D YHH EY ++ +  + + ++ G EL+LIDF+RIP        EWV++HVRA +  F+AE+E AGF F  EV +P+ +ENY + F  P
Sbjct:  778 PDGINDSFLDPDLDPSEWV-----NRF-EIESREVFAARGSILKAVGLKPGMSIADIGSGTGLYVGLFSKEVGTEGRVYAVDISPRLVDFVRRRVKAEELHNVEVVQSDEKSAKL-GDRKVDRVFVCDTYHHFEYYESMLASIMDALKPGGELILIDFNRIPGTSR----EWVVNHVRADKQTFQAEVEAAGFEFIDEVRIPEFKENYLLRFRKP 981          
BLAST of EWM24583.1 vs. NCBI_GenBank
Match: gi|499432771|ref|WP_011120235.1| (methyltransferase [Rhodopirellula baltica] >gi|32473470|ref|NP_866464.1| methyltransferase [Rhodopirellula baltica SH 1] >gi|32398150|emb|CAD78245.1| conserved hypothetical protein-putative methyltransferase [Rhodopirellula baltica SH 1])

HSP 1 Score: 139.043 bits (349), Expect = 4.477e-37
Identity = 73/185 (39.46%), Postives = 107/185 (57.84%), Query Frame = 0
Query:   47 ETRDIARNVPDILEALGDLKGKQIVDLGSGTGLFLNFLDAAVGPKGHVYAVEISPGFVELLRKKKEDEGLSNTSIVLGNTTNSELPADLKVDMVLLIDVYHHIEYVQTYMTKVREGMRTGAELVLIDFHRIPEKIWSHPPEWVLSHVRAGQDVFRAELEQAGFVFQREVTLPKLQENYFMIFTNP 231
            E+R++      I+ A+    G Q+ D+G+GTGLFL     AVG  G ++A++I+P F+E + +  E + L N + VLG   +  LP +  +    + DVYHH EY    +  + + M+ G +LV+IDF RI  K      EW + HVRAG++ FR E+E AGFVF+ EV L    ENYF+ F  P
Sbjct:   57 ESREVYAAKDQIVAAMKLKPGDQVADVGTGTGLFLEPFSDAVGKDGWIFAIDIAPKFIERVSRISELKRLGNVTPVLGLPDDICLPPN-SITAAFVCDVYHHFEYPANSLKSIFDAMKPGGQLVVIDFERIEGK----SREWTMGHVRAGKETFRKEIEAAGFVFREEVKLDGFDENYFLRFGRP 236          
BLAST of EWM24583.1 vs. NCBI_GenBank
Match: gi|149814202|gb|EDM73815.1| (hypothetical protein PPSIR1_34647 [Plesiocystis pacifica SIR-1])

HSP 1 Score: 139.813 bits (351), Expect = 5.029e-37
Identity = 72/182 (39.56%), Postives = 106/182 (58.24%), Query Frame = 0
Query:   49 RDIARNVPDILEALGDLKGKQIVDLGSGTGLFLNFLDAAVGPKGHVYAVEISPGFVELLRKKKEDEGLSNTSIVLGNTTNSELPADLKVDMVLLIDVYHHIEYVQTYMTKVREGMRTGAELVLIDFHRIPEKIWSHPPEWVLSHVRAGQDVFRAELEQAGFVFQREVTLPKLQENYFMIFTN 230
            RD+  +   I+ A+    G  + D+G+GTG FL  L A +GP+G +YAV+I+P F+E LR +  DEGLSN  +V G TT + LP    VD++ + DVYHHIEY   Y+  + E +R G  LV+++F ++P K        ++ HVR  +    AE+   GF    E+T   L ENY ++FT 
Sbjct:   96 RDVFEHREAIVAAMALEPGMTVADIGAGTGAFLTTLSAPLGPEGKLYAVDIAPPFLEHLRGRVADEGLSNVEVVEGTTTETGLPPG-SVDVLFVCDVYHHIEYPSAYLRSLHETLRPGGRLVIVEFDKVPGKTSKR----MMKHVRQDKATLLAEVGAEGFSLVEEITSVPLSENYMLVFTR 272          
BLAST of EWM24583.1 vs. NCBI_GenBank
Match: gi|495942552|ref|WP_008667131.1| (fibrillarin-like rRNA methylase [Rhodopirellula europaea] >gi|460272466|gb|EMI26535.1| Methyltransferase type 11 [Rhodopirellula europaea SH398])

HSP 1 Score: 138.658 bits (348), Expect = 6.593e-37
Identity = 73/185 (39.46%), Postives = 108/185 (58.38%), Query Frame = 0
Query:   47 ETRDIARNVPDILEALGDLKGKQIVDLGSGTGLFLNFLDAAVGPKGHVYAVEISPGFVELLRKKKEDEGLSNTSIVLGNTTNSELPADLKVDMVLLIDVYHHIEYVQTYMTKVREGMRTGAELVLIDFHRIPEKIWSHPPEWVLSHVRAGQDVFRAELEQAGFVFQREVTLPKLQENYFMIFTNP 231
            E+R++     +I+ A+    G Q+ D+G+GTGLF+     AVG  G V+A++I+P FV+ + +  E + L N + VLG   +  LP +  +    + DVYHH EY    +  + + M+ G +LV+IDF RI  K      EW + HVRAG++ FR E+E AGFVF+ EV L    ENYF+ F  P
Sbjct:   57 ESREVYAAKDEIVSAMKLKPGDQVADIGTGTGLFVEPFSDAVGKDGWVFAIDIAPKFVQRVSRISELKRLGNVTPVLGLPDDICLPPN-SITAAFVCDVYHHFEYPANSLKSIFDAMKPGGQLVVIDFERIEGK----SREWTMGHVRAGKETFREEIEAAGFVFREEVKLDGFDENYFLRFGRP 236          
BLAST of EWM24583.1 vs. NCBI_GenBank
Match: gi|327540115|gb|EGF26709.1| (Methyltransferase type 11 [Rhodopirellula baltica WH47])

HSP 1 Score: 137.887 bits (346), Expect = 8.793e-37
Identity = 72/185 (38.92%), Postives = 107/185 (57.84%), Query Frame = 0
Query:   47 ETRDIARNVPDILEALGDLKGKQIVDLGSGTGLFLNFLDAAVGPKGHVYAVEISPGFVELLRKKKEDEGLSNTSIVLGNTTNSELPADLKVDMVLLIDVYHHIEYVQTYMTKVREGMRTGAELVLIDFHRIPEKIWSHPPEWVLSHVRAGQDVFRAELEQAGFVFQREVTLPKLQENYFMIFTNP 231
            E+R++      I+ A+    G Q+ D+G+GTGLF+     AVG  G ++A++I+P F+E + +  E + L N + VLG   +  LP +  +    + DVYHH EY    +  + + M+ G +LV+IDF RI  K      EW + HVRAG++ FR E+E AGFVF+ EV L    ENYF+ F  P
Sbjct:   41 ESREVYAAKDQIVAAMKLKPGDQVADVGTGTGLFVEPFSDAVGKDGWIFAIDIAPKFIERVSRISELKRLGNVTPVLGLPDDICLPPN-SITAAFVCDVYHHFEYPANSLKSIFDAMKPGGQLVVIDFERIEGK----SREWTMGHVRAGKETFRKEIEAAGFVFREEVKLDGFDENYFLRFGRP 220          
BLAST of EWM24583.1 vs. NCBI_GenBank
Match: gi|495930274|ref|WP_008654853.1| (fibrillarin-like rRNA methylase [Rhodopirellula europaea] >gi|448887583|gb|EMB17948.1| Methyltransferase type 11 [Rhodopirellula europaea 6C])

HSP 1 Score: 138.272 bits (347), Expect = 8.812e-37
Identity = 73/185 (39.46%), Postives = 108/185 (58.38%), Query Frame = 0
Query:   47 ETRDIARNVPDILEALGDLKGKQIVDLGSGTGLFLNFLDAAVGPKGHVYAVEISPGFVELLRKKKEDEGLSNTSIVLGNTTNSELPADLKVDMVLLIDVYHHIEYVQTYMTKVREGMRTGAELVLIDFHRIPEKIWSHPPEWVLSHVRAGQDVFRAELEQAGFVFQREVTLPKLQENYFMIFTNP 231
            E+R++     +I+ A+    G Q+ D+G+GTGLF+     AVG  G V+A++I+P FV+ + +  E + L N + VLG   +  LP +  +    + DVYHH EY    +  + + M+ G +LV+IDF RI  K      EW + HVRAG++ FR E+E AGFVF+ EV L    ENYF+ F  P
Sbjct:   57 ESREVYAAKDEIVAAMKLKPGDQVADIGTGTGLFVEPFSDAVGKDGWVFAIDIAPKFVQRVSRISELKRLGNVTPVLGLPDDICLPPN-SITAAFVCDVYHHFEYPANSLKSIFDAMKPGGQLVVIDFERIEGK----SREWTMGHVRAGKETFREEIEAAGFVFREEVKLDGFDENYFLRFGRP 236          
The following BLAST results are available for this feature:
BLAST of EWM24583.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106099|gb|EWM24583.1|2.544e-169100.00methyltransferase type 11 [Nannochloropsis gaditan... [more]
gi|585106100|gb|EWM24584.1|7.199e-12597.79methyltransferase type 11 [Nannochloropsis gaditan... [more]
gi|873230410|emb|CEM11033.1|3.451e-6546.98unnamed protein product [Vitrella brassicaformis C... [more]
gi|1180213669|ref|WP_083732515.1|3.030e-4138.25hypothetical protein [Fuerstia marisgermanicae][more]
gi|1140106012|gb|APZ90569.1|3.862e-3939.07Ubiquinone/menaquinone biosynthesis methyltransfer... [more]
gi|499432771|ref|WP_011120235.1|4.477e-3739.46methyltransferase [Rhodopirellula baltica] >gi|324... [more]
gi|149814202|gb|EDM73815.1|5.029e-3739.56hypothetical protein PPSIR1_34647 [Plesiocystis pa... [more]
gi|495942552|ref|WP_008667131.1|6.593e-3739.46fibrillarin-like rRNA methylase [Rhodopirellula eu... [more]
gi|327540115|gb|EGF26709.1|8.793e-3738.92Methyltransferase type 11 [Rhodopirellula baltica ... [more]
gi|495930274|ref|WP_008654853.1|8.812e-3739.46fibrillarin-like rRNA methylase [Rhodopirellula eu... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6109rna6109Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications