rna6109, rna6109 (mRNA) Nannochloropsis gaditana

Overview
Namerna6109
Unique Namerna6109
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1264
Alignment locationCM002467.1:590370..591941 +

Link to JBrowse

Properties
Property NameValue
Productmethyltransferase type 11
Orig transcript idgnl|cribi|Naga_100062g26.906.mrna
Orig protein idgnl|cribi|Naga_100062g26.906
GbkeymRNA
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:590370..591941 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100062g26gene5901Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6109rna6109-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24583.1cds6094Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6109 ID=rna6109|Name=rna6109|organism=Nannochloropsis gaditana|type=mRNA|length=1264bp
CCGTTAGGCTGCTAGCCATAAGTGACCCGATTGGAATGCGTCTGTGCGTG
GATCAGTATGGATAGAATGACTCCCTTTTTCCATGTCTATGGCATCACTA
GCAAGAGGAAGGAGACCTGGCGAAGAGCGAGCGACGGGGTCGGGTCCCTG
GCGATGGAACACTTGACGGAGCTTGAAACCAACAAGGAAAGTTTATAGAG
ATTCAACGAACTTTCTGTCGATGGCAGAGCCAAAGGAAGGTACGGTGACT
TTCGACAGAGATCACTATCCTGAAGGCTTAAATGCGAATTTTCTCGTATC
GGATGCCGAAGCTCTGGAAGCCAAGTATTCCGGAGCCAAGGGGTTGTTCA
CAGACCCAGAAACCAGAGACATAGCCCGGAACGTGCCGGACATTTTGGAA
GCACTTGGTGATCTGAAGGGGAAACAAATTGTTGATCTTGGATCTGGAAC
TGGCCTTTTTCTTAATTTTCTTGACGCAGCAGTAGGCCCGAAAGGCCATG
TATACGCTGTAGAAATTTCACCTGGATTCGTGGAACTGTTGCGAAAGAAG
AAGGAAGATGAGGGATTGAGCAACACAAGCATAGTGCTTGGGAATACTAC
AAATAGTGAGTTACCTGCTGATCTTAAAGTGGACATGGTTCTTCTTATTG
ATGTCTACCATCACATCGAGTATGTGCAAACGTACATGACAAAGGTGCGA
GAAGGAATGCGGACGGGGGCCGAGCTGGTGCTCATTGATTTCCACAGGGT
AAGCATAAAGCTCACGGGATAGCATTCATGAATCACCTGAAAATTAGATC
GATGGGTGGAAAATGCGTGTCTTACAAGTCGCAGGCTGATAAGAGGAACC
AGAATGACTGGATCTCTTACTGCGCAGGATGGGTTTTCTTCCTCACAAAT
TTTACGAGTGGAAATCGGCTTAATGTATCTACTGAGCTTGTCGTGTCTTC
TTCTTGTATCCTTGTAAATTTCAAGCCTGCTCTACGATATTTCCGTTAAA
CGAACATTCATCAGATACCAGAAAAGATATGGAGCCATCCTCCGGAGTGG
GTTCTATCCCATGTACGTGCAGGCCAGGATGTTTTTCGAGCAGAACTGGA
ACAGGCAGGTTTCGTGTTCCAGCGAGAAGTGACTTTGCCCAAGCTTCAGG
AAAATTATTTTATGATTTTCACAAACCCTTGAGTCACCGGTGTTATTTTA
CTCTACACCTAGCGGGGGAAAAGAAAGGCGTTGAAAGCAAAGGAACTTGA
CGGTGAAATGTTCA
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protein sequence of rna6109

>rna6109-protein ID=rna6109-protein|Name=rna6109|organism=Nannochloropsis gaditana|type=polypeptide|length=231bp
MAEPKEGTVTFDRDHYPEGLNANFLVSDAEALEAKYSGAKGLFTDPETRD
IARNVPDILEALGDLKGKQIVDLGSGTGLFLNFLDAAVGPKGHVYAVEIS
PGFVELLRKKKEDEGLSNTSIVLGNTTNSELPADLKVDMVLLIDVYHHIE
YVQTYMTKVREGMRTGAELVLIDFHRIPEKIWSHPPEWVLSHVRAGQDVF
RAELEQAGFVFQREVTLPKLQENYFMIFTNP
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mRNA from alignment at CM002467.1:590370..591941+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6109 ID=rna6109|Name=rna6109|organism=Nannochloropsis gaditana|type=mRNA|length=1572bp|location=Sequence derived from alignment at CM002467.1:590370..591941+ (Nannochloropsis gaditana)
AGGCTGCTAGCCATAAGTGACCCGATTGGAATGCGTCTGTGCGTGGATCA
GTATGGATAGAATGactccctttttccatgtcTATGGCATCActagcaag
aggaaggagacctGGCGAAGAGCGAGCGACGGGGTCGGGTCCCTGGCGAT
GGAACACTTGACGGAGCTTGAAACCAACAAGGAAAGTTTATGTAAGGAAA
TGGCTATCTCCGACAGTGGCTGAAACGTGGTAGTGTCCGAGGTCGTGGCG
CGAGCTCTTTCAGCAGAAGGAGCCATATCTTGCATCCAAGATATTATCTC
TCCAAGCAATATgtctgtttttttttttgcatCCTTAAATAACTGTAGGA
GCACCcaaaatattttttttacTTCCATCAATATCTCAGAGAGATTCAAC
GAACTTTCTGTCGATGGCAGAGCCAAAGGAAGGTACGGTGACTTTCGACA
GAGGTacgtcctccactcctccagCCATGTGAGGTGTTtgcctcgccttc
ccactTTATCGAACAGCCAAGTGATCCATACTGTGAGACTGAGCACGAGC
GTTACCGCACACTGTCAGATCACTATCCTGAAGGCTTAAATGCGAATTTT
CTCGTATCGGATGCCGAAGCTCTGGAAGCCAAGTATTCCGGAGCCAAGGG
GTTGTTCACAGACCCAGAAACCAGAGACATAGCCCGGAACGTGCCGGACA
TTTTGGAAGCACTTGGTGATCTGAAGGGGAAACAAATTGTTGATCTTGGA
TCTGGAACTGGCCTTTTTCTTAATTTTCTTGACGCAGCAGTAGGCCCGAA
AGGCCATGTATACGCTGTAGAAATTTCACCTGGATTCGTGGAACTGTTgc
gaaagaagaaggaagatgagggatTGAGCAACACAAGCATAGTGCTTGGG
AATACTACAAATAGTGAGTTACCTGCTGATCTTAAAGTGGACATGGTTCT
TCTTATTGATGTCTACCATCACATCGAGTATGTGCAAACGTACATGACAA
AGGTGCGAGAAGGAATGCGGACGGGGGCCGAGCTGGTGCTCATTGATTTC
CACAGGGTAAGCATAAAGCTCACGGGATAGCATTCATGAATCACCTGAAA
ATTAGATCGATGGGTGGAAAATGCGTGTCTTACAAGTCGCAGGCTGATAA
GAGGAACCAGAATGACTGGATCTCTTACTGCGCAGGATGGGTTTTCTTCC
TCACAAATTTTACGAGTGGAAATCGGCTTAATGTATCTACTGAGCTTGTc
gtgtcttcttcttgtaTCCTTGTAAATTTCAAGCCTGCTCTACGATATTT
CCGTTAAACGAACATTCATCAGATACCAGAAAAGATATGGAGCCATCCTC
CGGAGTGGGTTCTATCCCATGTACGTGCAGGCCAGGATGTTTTTCGAGCA
GAACTGGAACAGGCAGGTTTCGTGTTCCAGCGAGAAGTGACTTTGCCCAA
GCTTCAGGAAAATTATTTTATGATTTTCACAAACCCTTGAGTCACCGGTG
TTATTTTACTCTACACCtagcgggggaaaagaaaggcgttGAAAGCAAAG
GAACTTGACGGTGAAATGTTCA
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Coding sequence (CDS) from alignment at CM002467.1:590370..591941+

>rna6109 ID=rna6109|Name=rna6109|organism=Nannochloropsis gaditana|type=CDS|length=2088bp|location=Sequence derived from alignment at CM002467.1:590370..591941+ (Nannochloropsis gaditana)
ATGGCAGAGCCAAAGGAAGGTACGGTGACTTTCGACAGAGATCACTATCC
TGAAGGCTTAAATGCGAATTTTCTCGTATCGGATGCCGAAGCTCTGGAAG
CCAAGTATTCCGGAGCCAAGGGGTTGTTCACAGACCCAGAAACCAGAGAC
ATAGCCCGGAACGTGCCGGACATTTTGGAAGCACTTGGTGATCTGAAGGG
GAAACAAATTGTTGATCTTGGATCTGGAACTGGCCTTTTTCTTAATTTTC
TTGACGCAGCAGTAGGCCCGAAAGGCCATGTATACGCTGTAGAAATTTCA
CCTGGATTCGTGGAACTGTTgcgaaagaagaaggaagatgagggatTGAG
CAACACAAGCATAGTGCTTGGGAATACTACAAATAGTGAGTTACCTGCTG
ATCTTAAAGTGGACATGGTTCTTCTTATTGATGTCTACCATCACATCGAG
TATGTGCAAACGTACATGACAAAGGTGCGAGAAGGAATGCGGACGGGGGC
CGAGCTGGTGCTCATTGATTTCCACAGGATACCAGAAAAGATATGGAGCC
ATCCTCCGGAGTGGGTTCTATCCCATGTACGTGCAGGCCAGGATGTTTTT
CGAGCAGAACTGGAACAGGCAGGTTTCGTGTTCCAGCGAGAAGTGACTTT
GCCCAAGCTTCAGGAAAATTATTTTATGATTTTCACAAACCCTTGAATGG
CAGAGCCAAAGGAAGGTACGGTGACTTTCGACAGAGATCACTATCCTGAA
GGCTTAAATGCGAATTTTCTCGTATCGGATGCCGAAGCTCTGGAAGCCAA
GTATTCCGGAGCCAAGGGGTTGTTCACAGACCCAGAAACCAGAGACATAG
CCCGGAACGTGCCGGACATTTTGGAAGCACTTGGTGATCTGAAGGGGAAA
CAAATTGTTGATCTTGGATCTGGAACTGGCCTTTTTCTTAATTTTCTTGA
CGCAGCAGTAGGCCCGAAAGGCCATGTATACGCTGTAGAAATTTCACCTG
GATTCGTGGAACTGTTgcgaaagaagaaggaagatgagggatTGAGCAAC
ACAAGCATAGTGCTTGGGAATACTACAAATAGTGAGTTACCTGCTGATCT
TAAAGTGGACATGGTTCTTCTTATTGATGTCTACCATCACATCGAGTATG
TGCAAACGTACATGACAAAGGTGCGAGAAGGAATGCGGACGGGGGCCGAG
CTGGTGCTCATTGATTTCCACAGGATACCAGAAAAGATATGGAGCCATCC
TCCGGAGTGGGTTCTATCCCATGTACGTGCAGGCCAGGATGTTTTTCGAG
CAGAACTGGAACAGGCAGGTTTCGTGTTCCAGCGAGAAGTGACTTTGCCC
AAGCTTCAGGAAAATTATTTTATGATTTTCACAAACCCTTGAATGGCAGA
GCCAAAGGAAGGTACGGTGACTTTCGACAGAGATCACTATCCTGAAGGCT
TAAATGCGAATTTTCTCGTATCGGATGCCGAAGCTCTGGAAGCCAAGTAT
TCCGGAGCCAAGGGGTTGTTCACAGACCCAGAAACCAGAGACATAGCCCG
GAACGTGCCGGACATTTTGGAAGCACTTGGTGATCTGAAGGGGAAACAAA
TTGTTGATCTTGGATCTGGAACTGGCCTTTTTCTTAATTTTCTTGACGCA
GCAGTAGGCCCGAAAGGCCATGTATACGCTGTAGAAATTTCACCTGGATT
CGTGGAACTGTTgcgaaagaagaaggaagatgagggatTGAGCAACACAA
GCATAGTGCTTGGGAATACTACAAATAGTGAGTTACCTGCTGATCTTAAA
GTGGACATGGTTCTTCTTATTGATGTCTACCATCACATCGAGTATGTGCA
AACGTACATGACAAAGGTGCGAGAAGGAATGCGGACGGGGGCCGAGCTGG
TGCTCATTGATTTCCACAGGATACCAGAAAAGATATGGAGCCATCCTCCG
GAGTGGGTTCTATCCCATGTACGTGCAGGCCAGGATGTTTTTCGAGCAGA
ACTGGAACAGGCAGGTTTCGTGTTCCAGCGAGAAGTGACTTTGCCCAAGC
TTCAGGAAAATTATTTTATGATTTTCACAAACCCTTGA
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Synonyms
Publications