EWM24597.1, cds6071 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24597.1 vs. NCBI_GenBank
Match: gi|585106113|gb|EWM24597.1| (sorting receptor for ubiquitinated membrane escrt 0 complex subunit sst4 [Nannochloropsis gaditana]) HSP 1 Score: 729.939 bits (1883), Expect = 0.000e+0 Identity = 367/367 (100.00%), Postives = 367/367 (100.00%), Query Frame = 0
Query: 1 MGARGQRGRGRKRRRGWGTARGRCRRGRARERKGRSCRAGGSDRGMPPPASSDGMGAEEEGGAGLEQSLALWNLFGSEGSEAAAAAPGREPDSRAVLEVEGVPVDTKQVSVSTTAPTAAADSTCSFSSSTSSLSSSSPSPPAPVTASTGQLSRQSLASSWRGALTIPAGKEGGREGGSKSEEKEEGNEEEEEEEEEEEEEEEEEDCGILVEDVSLPELYPPGRLVHIYSYRGVYKACMPPRSFPGLRRIPLQGNLLKDHAPTAYFSALCEVIDVRRAPQPPPAWEGFKEKEACVCCAVDLTWQRATASEAHRDREKHNCRCCGGLVCQDCSRHRRALPSIGLSAPARVCDRCFFGGKQSAVEATERG 367
MGARGQRGRGRKRRRGWGTARGRCRRGRARERKGRSCRAGGSDRGMPPPASSDGMGAEEEGGAGLEQSLALWNLFGSEGSEAAAAAPGREPDSRAVLEVEGVPVDTKQVSVSTTAPTAAADSTCSFSSSTSSLSSSSPSPPAPVTASTGQLSRQSLASSWRGALTIPAGKEGGREGGSKSEEKEEGNEEEEEEEEEEEEEEEEEDCGILVEDVSLPELYPPGRLVHIYSYRGVYKACMPPRSFPGLRRIPLQGNLLKDHAPTAYFSALCEVIDVRRAPQPPPAWEGFKEKEACVCCAVDLTWQRATASEAHRDREKHNCRCCGGLVCQDCSRHRRALPSIGLSAPARVCDRCFFGGKQSAVEATERG
Sbjct: 1 MGARGQRGRGRKRRRGWGTARGRCRRGRARERKGRSCRAGGSDRGMPPPASSDGMGAEEEGGAGLEQSLALWNLFGSEGSEAAAAAPGREPDSRAVLEVEGVPVDTKQVSVSTTAPTAAADSTCSFSSSTSSLSSSSPSPPAPVTASTGQLSRQSLASSWRGALTIPAGKEGGREGGSKSEEKEEGNEEEEEEEEEEEEEEEEEDCGILVEDVSLPELYPPGRLVHIYSYRGVYKACMPPRSFPGLRRIPLQGNLLKDHAPTAYFSALCEVIDVRRAPQPPPAWEGFKEKEACVCCAVDLTWQRATASEAHRDREKHNCRCCGGLVCQDCSRHRRALPSIGLSAPARVCDRCFFGGKQSAVEATERG 367
BLAST of EWM24597.1 vs. NCBI_GenBank
Match: gi|1072233904|gb|OEU18634.1| (hypothetical protein FRACYDRAFT_217262 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 165.622 bits (418), Expect = 4.887e-46 Identity = 73/146 (50.00%), Postives = 94/146 (64.38%), Query Frame = 0
Query: 218 LYPPGRLVHIYSYRGVYKACMPPRSFPGLRRIPLQGNLLKDHAPTAYFSALCEVIDVRRAPQPPPAWEGFKEKEACVCCAVDLTWQRATASEAHRDREKHNCRCCGGLVCQDCSRHRRALPSIGLSAPARVCDRCF---FGGKQSA 360
++ PG+++H+YS+RGVYKA PR+F LRRI L GN+L +H +YF L EV VR A + PP W + E + C CCA TW + SEA R+KHNCR CGGL C CSR+R + SIGL+ P RVCDRC+ GG +A
Sbjct: 1 MFVPGKVIHVYSHRGVYKAAYVPRTFKELRRISLAGNMLSNHTAKSYFEGLLEVQTVRDAQESPPTWTAYDEDDTCCCCANRFTWASTSDSEAQEARDKHNCRSCGGLTCDPCSRNRVPISSIGLTVPVRVCDRCYNDILGGVSAA 146
BLAST of EWM24597.1 vs. NCBI_GenBank
Match: gi|298713988|emb|CBJ27220.1| (Zinc finger FYVE domain-containing protein [Ectocarpus siliculosus]) HSP 1 Score: 162.925 bits (411), Expect = 1.642e-40 Identity = 79/150 (52.67%), Postives = 91/150 (60.67%), Query Frame = 0
Query: 215 LPELYPPGRLVHIYSYRGVYKACMPPRSFPGLRRIPLQGNLLKDHAPTAYFSALCEVIDVRRAP---QPPPAWEGFKEKEACVCCAVDLTWQRATASEAHRDREKHNCRCCGGLVCQDCSRHRRALPSIGLSAPARVCDRCFFGGKQSAV 361
LPELY PGR+VHIYS RGVY+A PR LR IP+ GN+L DHA AYF AL E+ VR A + P W F E E C D W + SEA R R+KHNCR CG LVC CS HR+ LP +G+ RVCDRCF+G S V
Sbjct: 1138 LPELYVPGRIVHIYSQRGVYRATEVPRDHDTLRTIPMYGNMLADHASIAYFDALEEIAAVRTAEAKGEFMPDWVPFSEFEVSQLCKADFWWASTSKSEAQRARDKHNCRMCGLLVCDPCSDHRKPLPRVGVLEACRVCDRCFYGADPSTV 1287
BLAST of EWM24597.1 vs. NCBI_GenBank
Match: gi|397565939|gb|EJK44834.1| (hypothetical protein THAOC_36595 [Thalassiosira oceanica]) HSP 1 Score: 161.384 bits (407), Expect = 6.041e-40 Identity = 72/145 (49.66%), Postives = 90/145 (62.07%), Query Frame = 0
Query: 209 LVEDVSLPELYPPGRLVHIYSYRGVYKACMPPRSFPGLRRIPLQGNLLKDHAPTAYFSALCEVIDVRRAPQPPPAWEGFKEKEACVCCAVDLTWQRATASEAHRDREKHNCRCCGGLVCQDCSRHRRALPSIGLSAPARVCDRCF 353
++ + LP ++ PG +VHIY+YRG YKA PR+F LRRI L GN+L DH +Y+ L EV VR A P W GF E C CCA TW + +EA R+KHNCR CGGLVC CS+ R +P IG++A RVCD CF
Sbjct: 1099 MLNEFPLPRMFIPGSIVHIYTYRGGYKAARVPRTFRSLRRISLAGNMLSDHTARSYYEGLLEVKAVRSAKHELPEWVGFAEDSTCCCCASLFTWASTSHTEAQAARDKHNCRACGGLVCDPCSKKRVPIPQIGITASVRVCDACF 1243
BLAST of EWM24597.1 vs. NCBI_GenBank
Match: gi|953490252|emb|CEG46678.1| (zinc finger fyve domain-containing protein [Plasmopara halstedii]) HSP 1 Score: 154.066 bits (388), Expect = 1.539e-37 Identity = 70/171 (40.94%), Postives = 104/171 (60.82%), Query Frame = 0
Query: 186 GNEEEEEEEEEEEEEEEEEDCGILVEDVSL--PELYPPGRLVHIYSYRGVYKACMPPRSFPGLRRIPLQGNLLKDHAPTAYFSALCEVIDVRRAPQPPPAWEGFKEKEACVCCAVDLTWQRATASEAHRDREKHNCRCCGGLVCQDCSRHRRALPSIGLSAPARVCDRCFF 354
G+++ E+E +E +EE + +L+ ++ EL+ PG++ HIY Y+G+Y+A R L IP+Q N+L DH Y SAL V D RRA P W F K C+CC TW ++SEA ++R++HNCR CG LVC+ CS+ R++P G++ P RVCDRC++
Sbjct: 812 GDKQSEDEPSDEILKEEHQIAAVLITNLYDDPKELFVPGKVTHIYFYKGIYEAVHVDRKCEELSHIPVQQNMLSDHLGRNYLSALRIVRDARRAKPTLPDWTPFSTKTRCMCCDSPFTWNSTSSSEAQQNRDQHNCRRCGALVCEGCSQKFRSIPEFGINVPVRVCDRCYY 982
BLAST of EWM24597.1 vs. NCBI_GenBank
Match: gi|301121698|ref|XP_002908576.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262103607|gb|EEY61659.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 151.754 bits (382), Expect = 8.605e-37 Identity = 79/198 (39.90%), Postives = 112/198 (56.57%), Query Frame = 0
Query: 157 ASSWRGALTIPAGKEGGREGGSKSEEKEEGNEEEEEEEEEEEEEEEEEDCGILVEDVSLPELYPPGRLVHIYSYRGVYKACMPPRSFPGLRRIPLQGNLLKDHAPTAYFSALCEVIDVRRAPQPPPAWEGFKEKEACVCCAVDLTWQRATASEAHRDREKHNCRCCGGLVCQDCSRHRRALPSIGLSAPARVCDRCFF 354
SSW LT + + G KS E E+ E ++ +EE++ E LV+D ELY PG++ HI+ Y+G+Y+A R L IP+Q N+L DH Y SAL V D RRA P W F K C+CC TW ++SEA ++R++HNCR CG LVC+ CS+ +++P G++ P RVCDRC++
Sbjct: 795 VSSW--TLTRTNLIDQLDKAGDKSSEDEQL--EPSDKARQEEKKVAAELVTTLVDDPK--ELYIPGKVTHIFFYKGIYEAVHVDRKCEELSHIPVQQNMLSDHLGCNYLSALRIVRDARRAKPALPEWVPFSTKTRCMCCDSPFTWNSTSSSEAQQNRDQHNCRRCGALVCEGCSQKFKSIPEFGINVPVRVCDRCYY 986
BLAST of EWM24597.1 vs. NCBI_GenBank
Match: gi|570336790|gb|ETO84738.1| (hypothetical protein F444_01365 [Phytophthora parasitica P1976] >gi|970648906|gb|KUF88320.1| hypothetical protein AM588_10002285 [Phytophthora nicotianae]) HSP 1 Score: 151.754 bits (382), Expect = 1.107e-36 Identity = 80/198 (40.40%), Postives = 110/198 (55.56%), Query Frame = 0
Query: 157 ASSWRGALTIPAGKEGGREGGSKSEEKEEGNEEEEEEEEEEEEEEEEEDCGILVEDVSLPELYPPGRLVHIYSYRGVYKACMPPRSFPGLRRIPLQGNLLKDHAPTAYFSALCEVIDVRRAPQPPPAWEGFKEKEACVCCAVDLTWQRATASEAHRDREKHNCRCCGGLVCQDCSRHRRALPSIGLSAPARVCDRCFF 354
SSW LT + + G K+ E E E ++ EEE+ E LV+D ELY PG++ HIY Y+G+Y+A R L IP+Q N+L DH Y SAL V D RRA P W F K C+CC TW ++SEA ++R++HNCR CG LVC+ CS+ +++P G++ P RVCDRC++
Sbjct: 787 VSSW--TLTRTNLIDQLDKAGEKNTEDEAL--EPSDKALHEEEKMAAELVATLVDDPK--ELYIPGKVTHIYFYKGIYEAVHVDRKCEELSHIPVQQNMLSDHLGCNYLSALRVVRDARRAKPTLPEWVPFSTKTRCMCCDSPFTWNSTSSSEAQQNRDQHNCRRCGALVCEGCSQKFKSIPEFGINVPVRVCDRCYY 978
BLAST of EWM24597.1 vs. NCBI_GenBank
Match: gi|568058884|gb|ETM55483.1| (hypothetical protein L914_01286 [Phytophthora parasitica]) HSP 1 Score: 151.369 bits (381), Expect = 1.128e-36 Identity = 80/198 (40.40%), Postives = 110/198 (55.56%), Query Frame = 0
Query: 157 ASSWRGALTIPAGKEGGREGGSKSEEKEEGNEEEEEEEEEEEEEEEEEDCGILVEDVSLPELYPPGRLVHIYSYRGVYKACMPPRSFPGLRRIPLQGNLLKDHAPTAYFSALCEVIDVRRAPQPPPAWEGFKEKEACVCCAVDLTWQRATASEAHRDREKHNCRCCGGLVCQDCSRHRRALPSIGLSAPARVCDRCFF 354
SSW LT + + G K+ E E E ++ EEE+ E LV+D ELY PG++ HIY Y+G+Y+A R L IP+Q N+L DH Y SAL V D RRA P W F K C+CC TW ++SEA ++R++HNCR CG LVC+ CS+ +++P G++ P RVCDRC++
Sbjct: 787 VSSW--TLTRTNLIDQLDKAGEKNTEDEAL--EPSDKALHEEEKMAAELVATLVDDPK--ELYIPGKVTHIYFYKGIYEAVHVDRKCEELSHIPVQQNMLSDHLGCNYLSALRVVRDARRAKPTLPEWVPFSTKTRCMCCDSPFTWNSTSSSEAQQNRDQHNCRRCGALVCEGCSQKFKSIPEFGINVPVRVCDRCYY 978
BLAST of EWM24597.1 vs. NCBI_GenBank
Match: gi|568028293|gb|ETM02236.1| (hypothetical protein L917_01255 [Phytophthora parasitica]) HSP 1 Score: 151.369 bits (381), Expect = 1.128e-36 Identity = 80/198 (40.40%), Postives = 110/198 (55.56%), Query Frame = 0
Query: 157 ASSWRGALTIPAGKEGGREGGSKSEEKEEGNEEEEEEEEEEEEEEEEEDCGILVEDVSLPELYPPGRLVHIYSYRGVYKACMPPRSFPGLRRIPLQGNLLKDHAPTAYFSALCEVIDVRRAPQPPPAWEGFKEKEACVCCAVDLTWQRATASEAHRDREKHNCRCCGGLVCQDCSRHRRALPSIGLSAPARVCDRCFF 354
SSW LT + + G K+ E E E ++ EEE+ E LV+D ELY PG++ HIY Y+G+Y+A R L IP+Q N+L DH Y SAL V D RRA P W F K C+CC TW ++SEA ++R++HNCR CG LVC+ CS+ +++P G++ P RVCDRC++
Sbjct: 787 VSSW--TLTRTNLIDQLDKAGEKNTEDEAL--EPSDKALHEEEKMAAELVATLVDDPK--ELYIPGKVTHIYFYKGIYEAVHVDRKCEELSHIPVQQNMLSDHLGCNYLSALRVVRDARRAKPTLPEWVPFSTKTRCMCCDSPFTWNSTSSSEAQQNRDQHNCRRCGALVCEGCSQKFKSIPEFGINVPVRVCDRCYY 978
BLAST of EWM24597.1 vs. NCBI_GenBank
Match: gi|567999134|gb|ETL49182.1| (hypothetical protein L916_01277 [Phytophthora parasitica]) HSP 1 Score: 151.369 bits (381), Expect = 1.172e-36 Identity = 80/198 (40.40%), Postives = 110/198 (55.56%), Query Frame = 0
Query: 157 ASSWRGALTIPAGKEGGREGGSKSEEKEEGNEEEEEEEEEEEEEEEEEDCGILVEDVSLPELYPPGRLVHIYSYRGVYKACMPPRSFPGLRRIPLQGNLLKDHAPTAYFSALCEVIDVRRAPQPPPAWEGFKEKEACVCCAVDLTWQRATASEAHRDREKHNCRCCGGLVCQDCSRHRRALPSIGLSAPARVCDRCFF 354
SSW LT + + G K+ E E E ++ EEE+ E LV+D ELY PG++ HIY Y+G+Y+A R L IP+Q N+L DH Y SAL V D RRA P W F K C+CC TW ++SEA ++R++HNCR CG LVC+ CS+ +++P G++ P RVCDRC++
Sbjct: 787 VSSW--TLTRTNLIDQLDKAGEKNTEDEAL--EPSDKALHEEEKMAAELVATLVDDPK--ELYIPGKVTHIYFYKGIYEAVHVDRKCEELSHIPVQQNMLSDHLGCNYLSALRVVRDARRAKPTLPEWVPFSTKTRCMCCDSPFTWNSTSSSEAQQNRDQHNCRRCGALVCEGCSQKFKSIPEFGINVPVRVCDRCYY 978 The following BLAST results are available for this feature:
BLAST of EWM24597.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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