EWM24597.1, cds6071 (CDS) Nannochloropsis gaditana

Overview
NameEWM24597.1
Unique Namecds6071
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:538134..539237 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24597.1
Productsorting receptor for ubiquitinated membrane escrt 0 complex subunit sst4
Orig transcript idgnl|cribi|Naga_100062g1.920.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:538134..539237 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0046872metal ion binding
Vocabulary: INTERPRO
TermDefinition
IPR011011Znf_FYVE_PHD
IPR017455Znf_FYVE-rel
IPR013083Znf_RING/FYVE/PHD
IPR000306Znf_FYVE
Homology
BLAST of EWM24597.1 vs. NCBI_GenBank
Match: gi|585106113|gb|EWM24597.1| (sorting receptor for ubiquitinated membrane escrt 0 complex subunit sst4 [Nannochloropsis gaditana])

HSP 1 Score: 729.939 bits (1883), Expect = 0.000e+0
Identity = 367/367 (100.00%), Postives = 367/367 (100.00%), Query Frame = 0
Query:    1 MGARGQRGRGRKRRRGWGTARGRCRRGRARERKGRSCRAGGSDRGMPPPASSDGMGAEEEGGAGLEQSLALWNLFGSEGSEAAAAAPGREPDSRAVLEVEGVPVDTKQVSVSTTAPTAAADSTCSFSSSTSSLSSSSPSPPAPVTASTGQLSRQSLASSWRGALTIPAGKEGGREGGSKSEEKEEGNEEEEEEEEEEEEEEEEEDCGILVEDVSLPELYPPGRLVHIYSYRGVYKACMPPRSFPGLRRIPLQGNLLKDHAPTAYFSALCEVIDVRRAPQPPPAWEGFKEKEACVCCAVDLTWQRATASEAHRDREKHNCRCCGGLVCQDCSRHRRALPSIGLSAPARVCDRCFFGGKQSAVEATERG 367
            MGARGQRGRGRKRRRGWGTARGRCRRGRARERKGRSCRAGGSDRGMPPPASSDGMGAEEEGGAGLEQSLALWNLFGSEGSEAAAAAPGREPDSRAVLEVEGVPVDTKQVSVSTTAPTAAADSTCSFSSSTSSLSSSSPSPPAPVTASTGQLSRQSLASSWRGALTIPAGKEGGREGGSKSEEKEEGNEEEEEEEEEEEEEEEEEDCGILVEDVSLPELYPPGRLVHIYSYRGVYKACMPPRSFPGLRRIPLQGNLLKDHAPTAYFSALCEVIDVRRAPQPPPAWEGFKEKEACVCCAVDLTWQRATASEAHRDREKHNCRCCGGLVCQDCSRHRRALPSIGLSAPARVCDRCFFGGKQSAVEATERG
Sbjct:    1 MGARGQRGRGRKRRRGWGTARGRCRRGRARERKGRSCRAGGSDRGMPPPASSDGMGAEEEGGAGLEQSLALWNLFGSEGSEAAAAAPGREPDSRAVLEVEGVPVDTKQVSVSTTAPTAAADSTCSFSSSTSSLSSSSPSPPAPVTASTGQLSRQSLASSWRGALTIPAGKEGGREGGSKSEEKEEGNEEEEEEEEEEEEEEEEEDCGILVEDVSLPELYPPGRLVHIYSYRGVYKACMPPRSFPGLRRIPLQGNLLKDHAPTAYFSALCEVIDVRRAPQPPPAWEGFKEKEACVCCAVDLTWQRATASEAHRDREKHNCRCCGGLVCQDCSRHRRALPSIGLSAPARVCDRCFFGGKQSAVEATERG 367          
BLAST of EWM24597.1 vs. NCBI_GenBank
Match: gi|1072233904|gb|OEU18634.1| (hypothetical protein FRACYDRAFT_217262 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 165.622 bits (418), Expect = 4.887e-46
Identity = 73/146 (50.00%), Postives = 94/146 (64.38%), Query Frame = 0
Query:  218 LYPPGRLVHIYSYRGVYKACMPPRSFPGLRRIPLQGNLLKDHAPTAYFSALCEVIDVRRAPQPPPAWEGFKEKEACVCCAVDLTWQRATASEAHRDREKHNCRCCGGLVCQDCSRHRRALPSIGLSAPARVCDRCF---FGGKQSA 360
            ++ PG+++H+YS+RGVYKA   PR+F  LRRI L GN+L +H   +YF  L EV  VR A + PP W  + E + C CCA   TW   + SEA   R+KHNCR CGGL C  CSR+R  + SIGL+ P RVCDRC+    GG  +A
Sbjct:    1 MFVPGKVIHVYSHRGVYKAAYVPRTFKELRRISLAGNMLSNHTAKSYFEGLLEVQTVRDAQESPPTWTAYDEDDTCCCCANRFTWASTSDSEAQEARDKHNCRSCGGLTCDPCSRNRVPISSIGLTVPVRVCDRCYNDILGGVSAA 146          
BLAST of EWM24597.1 vs. NCBI_GenBank
Match: gi|298713988|emb|CBJ27220.1| (Zinc finger FYVE domain-containing protein [Ectocarpus siliculosus])

HSP 1 Score: 162.925 bits (411), Expect = 1.642e-40
Identity = 79/150 (52.67%), Postives = 91/150 (60.67%), Query Frame = 0
Query:  215 LPELYPPGRLVHIYSYRGVYKACMPPRSFPGLRRIPLQGNLLKDHAPTAYFSALCEVIDVRRAP---QPPPAWEGFKEKEACVCCAVDLTWQRATASEAHRDREKHNCRCCGGLVCQDCSRHRRALPSIGLSAPARVCDRCFFGGKQSAV 361
            LPELY PGR+VHIYS RGVY+A   PR    LR IP+ GN+L DHA  AYF AL E+  VR A    +  P W  F E E    C  D  W   + SEA R R+KHNCR CG LVC  CS HR+ LP +G+    RVCDRCF+G   S V
Sbjct: 1138 LPELYVPGRIVHIYSQRGVYRATEVPRDHDTLRTIPMYGNMLADHASIAYFDALEEIAAVRTAEAKGEFMPDWVPFSEFEVSQLCKADFWWASTSKSEAQRARDKHNCRMCGLLVCDPCSDHRKPLPRVGVLEACRVCDRCFYGADPSTV 1287          
BLAST of EWM24597.1 vs. NCBI_GenBank
Match: gi|397565939|gb|EJK44834.1| (hypothetical protein THAOC_36595 [Thalassiosira oceanica])

HSP 1 Score: 161.384 bits (407), Expect = 6.041e-40
Identity = 72/145 (49.66%), Postives = 90/145 (62.07%), Query Frame = 0
Query:  209 LVEDVSLPELYPPGRLVHIYSYRGVYKACMPPRSFPGLRRIPLQGNLLKDHAPTAYFSALCEVIDVRRAPQPPPAWEGFKEKEACVCCAVDLTWQRATASEAHRDREKHNCRCCGGLVCQDCSRHRRALPSIGLSAPARVCDRCF 353
            ++ +  LP ++ PG +VHIY+YRG YKA   PR+F  LRRI L GN+L DH   +Y+  L EV  VR A    P W GF E   C CCA   TW   + +EA   R+KHNCR CGGLVC  CS+ R  +P IG++A  RVCD CF
Sbjct: 1099 MLNEFPLPRMFIPGSIVHIYTYRGGYKAARVPRTFRSLRRISLAGNMLSDHTARSYYEGLLEVKAVRSAKHELPEWVGFAEDSTCCCCASLFTWASTSHTEAQAARDKHNCRACGGLVCDPCSKKRVPIPQIGITASVRVCDACF 1243          
BLAST of EWM24597.1 vs. NCBI_GenBank
Match: gi|953490252|emb|CEG46678.1| (zinc finger fyve domain-containing protein [Plasmopara halstedii])

HSP 1 Score: 154.066 bits (388), Expect = 1.539e-37
Identity = 70/171 (40.94%), Postives = 104/171 (60.82%), Query Frame = 0
Query:  186 GNEEEEEEEEEEEEEEEEEDCGILVEDVSL--PELYPPGRLVHIYSYRGVYKACMPPRSFPGLRRIPLQGNLLKDHAPTAYFSALCEVIDVRRAPQPPPAWEGFKEKEACVCCAVDLTWQRATASEAHRDREKHNCRCCGGLVCQDCSRHRRALPSIGLSAPARVCDRCFF 354
            G+++ E+E  +E  +EE +   +L+ ++     EL+ PG++ HIY Y+G+Y+A    R    L  IP+Q N+L DH    Y SAL  V D RRA    P W  F  K  C+CC    TW   ++SEA ++R++HNCR CG LVC+ CS+  R++P  G++ P RVCDRC++
Sbjct:  812 GDKQSEDEPSDEILKEEHQIAAVLITNLYDDPKELFVPGKVTHIYFYKGIYEAVHVDRKCEELSHIPVQQNMLSDHLGRNYLSALRIVRDARRAKPTLPDWTPFSTKTRCMCCDSPFTWNSTSSSEAQQNRDQHNCRRCGALVCEGCSQKFRSIPEFGINVPVRVCDRCYY 982          
BLAST of EWM24597.1 vs. NCBI_GenBank
Match: gi|301121698|ref|XP_002908576.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262103607|gb|EEY61659.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 151.754 bits (382), Expect = 8.605e-37
Identity = 79/198 (39.90%), Postives = 112/198 (56.57%), Query Frame = 0
Query:  157 ASSWRGALTIPAGKEGGREGGSKSEEKEEGNEEEEEEEEEEEEEEEEEDCGILVEDVSLPELYPPGRLVHIYSYRGVYKACMPPRSFPGLRRIPLQGNLLKDHAPTAYFSALCEVIDVRRAPQPPPAWEGFKEKEACVCCAVDLTWQRATASEAHRDREKHNCRCCGGLVCQDCSRHRRALPSIGLSAPARVCDRCFF 354
             SSW   LT     +   + G KS E E+   E  ++  +EE++   E    LV+D    ELY PG++ HI+ Y+G+Y+A    R    L  IP+Q N+L DH    Y SAL  V D RRA    P W  F  K  C+CC    TW   ++SEA ++R++HNCR CG LVC+ CS+  +++P  G++ P RVCDRC++
Sbjct:  795 VSSW--TLTRTNLIDQLDKAGDKSSEDEQL--EPSDKARQEEKKVAAELVTTLVDDPK--ELYIPGKVTHIFFYKGIYEAVHVDRKCEELSHIPVQQNMLSDHLGCNYLSALRIVRDARRAKPALPEWVPFSTKTRCMCCDSPFTWNSTSSSEAQQNRDQHNCRRCGALVCEGCSQKFKSIPEFGINVPVRVCDRCYY 986          
BLAST of EWM24597.1 vs. NCBI_GenBank
Match: gi|570336790|gb|ETO84738.1| (hypothetical protein F444_01365 [Phytophthora parasitica P1976] >gi|970648906|gb|KUF88320.1| hypothetical protein AM588_10002285 [Phytophthora nicotianae])

HSP 1 Score: 151.754 bits (382), Expect = 1.107e-36
Identity = 80/198 (40.40%), Postives = 110/198 (55.56%), Query Frame = 0
Query:  157 ASSWRGALTIPAGKEGGREGGSKSEEKEEGNEEEEEEEEEEEEEEEEEDCGILVEDVSLPELYPPGRLVHIYSYRGVYKACMPPRSFPGLRRIPLQGNLLKDHAPTAYFSALCEVIDVRRAPQPPPAWEGFKEKEACVCCAVDLTWQRATASEAHRDREKHNCRCCGGLVCQDCSRHRRALPSIGLSAPARVCDRCFF 354
             SSW   LT     +   + G K+ E E    E  ++   EEE+   E    LV+D    ELY PG++ HIY Y+G+Y+A    R    L  IP+Q N+L DH    Y SAL  V D RRA    P W  F  K  C+CC    TW   ++SEA ++R++HNCR CG LVC+ CS+  +++P  G++ P RVCDRC++
Sbjct:  787 VSSW--TLTRTNLIDQLDKAGEKNTEDEAL--EPSDKALHEEEKMAAELVATLVDDPK--ELYIPGKVTHIYFYKGIYEAVHVDRKCEELSHIPVQQNMLSDHLGCNYLSALRVVRDARRAKPTLPEWVPFSTKTRCMCCDSPFTWNSTSSSEAQQNRDQHNCRRCGALVCEGCSQKFKSIPEFGINVPVRVCDRCYY 978          
BLAST of EWM24597.1 vs. NCBI_GenBank
Match: gi|568058884|gb|ETM55483.1| (hypothetical protein L914_01286 [Phytophthora parasitica])

HSP 1 Score: 151.369 bits (381), Expect = 1.128e-36
Identity = 80/198 (40.40%), Postives = 110/198 (55.56%), Query Frame = 0
Query:  157 ASSWRGALTIPAGKEGGREGGSKSEEKEEGNEEEEEEEEEEEEEEEEEDCGILVEDVSLPELYPPGRLVHIYSYRGVYKACMPPRSFPGLRRIPLQGNLLKDHAPTAYFSALCEVIDVRRAPQPPPAWEGFKEKEACVCCAVDLTWQRATASEAHRDREKHNCRCCGGLVCQDCSRHRRALPSIGLSAPARVCDRCFF 354
             SSW   LT     +   + G K+ E E    E  ++   EEE+   E    LV+D    ELY PG++ HIY Y+G+Y+A    R    L  IP+Q N+L DH    Y SAL  V D RRA    P W  F  K  C+CC    TW   ++SEA ++R++HNCR CG LVC+ CS+  +++P  G++ P RVCDRC++
Sbjct:  787 VSSW--TLTRTNLIDQLDKAGEKNTEDEAL--EPSDKALHEEEKMAAELVATLVDDPK--ELYIPGKVTHIYFYKGIYEAVHVDRKCEELSHIPVQQNMLSDHLGCNYLSALRVVRDARRAKPTLPEWVPFSTKTRCMCCDSPFTWNSTSSSEAQQNRDQHNCRRCGALVCEGCSQKFKSIPEFGINVPVRVCDRCYY 978          
BLAST of EWM24597.1 vs. NCBI_GenBank
Match: gi|568028293|gb|ETM02236.1| (hypothetical protein L917_01255 [Phytophthora parasitica])

HSP 1 Score: 151.369 bits (381), Expect = 1.128e-36
Identity = 80/198 (40.40%), Postives = 110/198 (55.56%), Query Frame = 0
Query:  157 ASSWRGALTIPAGKEGGREGGSKSEEKEEGNEEEEEEEEEEEEEEEEEDCGILVEDVSLPELYPPGRLVHIYSYRGVYKACMPPRSFPGLRRIPLQGNLLKDHAPTAYFSALCEVIDVRRAPQPPPAWEGFKEKEACVCCAVDLTWQRATASEAHRDREKHNCRCCGGLVCQDCSRHRRALPSIGLSAPARVCDRCFF 354
             SSW   LT     +   + G K+ E E    E  ++   EEE+   E    LV+D    ELY PG++ HIY Y+G+Y+A    R    L  IP+Q N+L DH    Y SAL  V D RRA    P W  F  K  C+CC    TW   ++SEA ++R++HNCR CG LVC+ CS+  +++P  G++ P RVCDRC++
Sbjct:  787 VSSW--TLTRTNLIDQLDKAGEKNTEDEAL--EPSDKALHEEEKMAAELVATLVDDPK--ELYIPGKVTHIYFYKGIYEAVHVDRKCEELSHIPVQQNMLSDHLGCNYLSALRVVRDARRAKPTLPEWVPFSTKTRCMCCDSPFTWNSTSSSEAQQNRDQHNCRRCGALVCEGCSQKFKSIPEFGINVPVRVCDRCYY 978          
BLAST of EWM24597.1 vs. NCBI_GenBank
Match: gi|567999134|gb|ETL49182.1| (hypothetical protein L916_01277 [Phytophthora parasitica])

HSP 1 Score: 151.369 bits (381), Expect = 1.172e-36
Identity = 80/198 (40.40%), Postives = 110/198 (55.56%), Query Frame = 0
Query:  157 ASSWRGALTIPAGKEGGREGGSKSEEKEEGNEEEEEEEEEEEEEEEEEDCGILVEDVSLPELYPPGRLVHIYSYRGVYKACMPPRSFPGLRRIPLQGNLLKDHAPTAYFSALCEVIDVRRAPQPPPAWEGFKEKEACVCCAVDLTWQRATASEAHRDREKHNCRCCGGLVCQDCSRHRRALPSIGLSAPARVCDRCFF 354
             SSW   LT     +   + G K+ E E    E  ++   EEE+   E    LV+D    ELY PG++ HIY Y+G+Y+A    R    L  IP+Q N+L DH    Y SAL  V D RRA    P W  F  K  C+CC    TW   ++SEA ++R++HNCR CG LVC+ CS+  +++P  G++ P RVCDRC++
Sbjct:  787 VSSW--TLTRTNLIDQLDKAGEKNTEDEAL--EPSDKALHEEEKMAAELVATLVDDPK--ELYIPGKVTHIYFYKGIYEAVHVDRKCEELSHIPVQQNMLSDHLGCNYLSALRVVRDARRAKPTLPEWVPFSTKTRCMCCDSPFTWNSTSSSEAQQNRDQHNCRRCGALVCEGCSQKFKSIPEFGINVPVRVCDRCYY 978          
The following BLAST results are available for this feature:
BLAST of EWM24597.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106113|gb|EWM24597.1|0.000e+0100.00sorting receptor for ubiquitinated membrane escrt ... [more]
gi|1072233904|gb|OEU18634.1|4.887e-4650.00hypothetical protein FRACYDRAFT_217262 [Fragilario... [more]
gi|298713988|emb|CBJ27220.1|1.642e-4052.67Zinc finger FYVE domain-containing protein [Ectoca... [more]
gi|397565939|gb|EJK44834.1|6.041e-4049.66hypothetical protein THAOC_36595 [Thalassiosira oc... [more]
gi|953490252|emb|CEG46678.1|1.539e-3740.94zinc finger fyve domain-containing protein [Plasmo... [more]
gi|301121698|ref|XP_002908576.1|8.605e-3739.90conserved hypothetical protein [Phytophthora infes... [more]
gi|570336790|gb|ETO84738.1|1.107e-3640.40hypothetical protein F444_01365 [Phytophthora para... [more]
gi|568058884|gb|ETM55483.1|1.128e-3640.40hypothetical protein L914_01286 [Phytophthora para... [more]
gi|568028293|gb|ETM02236.1|1.128e-3640.40hypothetical protein L917_01255 [Phytophthora para... [more]
gi|567999134|gb|ETL49182.1|1.172e-3640.40hypothetical protein L916_01277 [Phytophthora para... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6086rna6086Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications