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Properties
| Property Name | Value |
|---|
| Product | sorting receptor for ubiquitinated membrane escrt 0 complex subunit sst4 |
| Orig transcript id | gnl|cribi|Naga_100062g1.920.mrna |
| Orig protein id | gnl|cribi|Naga_100062g1.920 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002467.1 | supercontig | CM002467.1:538091..539866 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6086 ID=rna6086|Name=rna6086|organism=Nannochloropsis gaditana|type=mRNA|length=3107bp
TGCATGGATGGCTTGGTCTCGTTGGACTTCCAACTAGACATGATTTACGG
GCAAGATTGTCCAGCGCACCTTGCTCGCATGCCTGGACGTCAACTCGAGG
AGCTGGAGCAACTTCACGTTGATTTCCCCGCCCGCGCGTTGGCACTCATC
CTCTTTGTCCAATGCAATACATTTTCCTTGCCATTTGACGCACAGAGAGC
TGAAGAGCACGCAAGAGCATGCACACCGACTGATTAAAGGACCCTCCCAA
GATTGGGCCCGGTGATTGCTGGCACCCCGCCATCGGGAACCTGCCGACTC
TTTTTTCATTCCCGGAAGAAGATAAGGCAAGTAATTGAGGTGAATGATGC
CAAAAGACGGAACCCTGGCCAACAAGAAGGGGCAGGACGGAGAAGAGGCT
AAGTCTGCGCTTGTTGCAGTCCCAAGCAGAGATCATGGGAGAAGCGCCAG
CATCACCAGCACCAGCAGCGTCAGCAGCACCAGCAGCAGTGGCAGTGGAG
GGACCGCGGCCGTCGCTATGGTCACAACAGCCCTGACGCGGTAAGTCACG
AGGGATGAGATATGTGCATGACCGGGATATCAAGTCGTACTGGTGTAGAG
TGAAAGGCTTTCAGACCGGGAAGACCAGCCAGAGGGCCGACCACCCGACG
TCGGGAGTGATAGCGGTTGGAGACACGCTGTTGACCGCCTCCGCGGCACA
GCCATTCACGACTTCCAGCATTTTGATCCTCTCTCTTTCCCCTTTTCCCC
CTATACCTTTCAGCGGTACCGCCCTGCACGCCGCCCGCTGGGGTCATACC
GCCAACCGGGGCGTGGCCTCAGTGTCCCGCTACTTGAGCAGGACCCTGAT
CGCCCGAGCTGCCGCCGCCACCGTCACAGAAATGAGCCGGTTCACGGCAG
ACCGGACCCGAGAGGTGCTTGACTATGCCACTTTACAGCTTGTCCAGAGC
GGGCACAAGCCTCTGCCTCCTGAGAACGGTTGGGGGGACGTGGGCAGGCG
GCTGGGCTCGATCTCCGCCTACGATCTGCAGCTGATCGACGAAAAAGTCC
GGGACGTGGGACTGTCGGAATTTGCAGACATGCTGGGGGTTGCAGACCCT
GGAGAGCTGCTGCGGGTGGCGGAGCTGCGGCTACAGGCGGCCCAAGGTGA
CGAGGACGCTCAGTACGCCCTCGCGGCGCGCTTTTGTCCTCCTCCTTTCC
GCAAACGGGACCGTTGCAAGAAATGCCACAAGGCCTTCGGGGTGACCCGC
TACCGGCACCATTGCCGGCATTGCGGGGAGAGCTTCTGCCAGGAGCACAG
CGCTTTCAGGCACGCCATTCCCAAGGTCGGTTACATGGTCCCGGCCCGGG
TGTGCGGCGCCTGCAAGGGCCAGCTGGAGGACGAGGACCTTAAAGACCGG
GTCGTCTGGCGGATGGTGCGGGTCGAGGCCTTTCTGAAGGACCGTTTGAT
CCCTTACTTTGCCCCGGGGGACCATACGCATCTGGACAGGGCCTTGCGGA
CGGTGGGCGGGTGGGTAAGCCGCGCAGCGCGCCGGGCCCCGCCCCTGCGC
AGCACAACGGCCTTGGCTGGCGAAGCCTTGGAGCTCTTCAGCCGGTACGG
GTACGCGGGCGTAGCGGGGGTCTTGCTTCGGCACGAGCACGTGGAGGCGG
TCGAGCTGCTCAAGGCGGTGTCGGGGGTGGATGCCGCCTGGCCCGTGACG
GGAAGCCAGCTGAGCGCGGCGATGTACTACCTGCTGGCACGGGGAAGGGG
GGAGCGAGGAGCGGCTCCCGATGCCGAGCAGGAGGCGCACCGAGGATGCC
CACCGGCCTCGGACAGCTTGATGCAGGACCTGTTGGACGTGGCGCCCTTG
GCCTTGCATTTCGCCTACTGCGACAACCTGGTGGAGATGCAACTCAAGGC
ACAGCAGCAAGGGTGGCGGTTGGTGTTCGCCTACGCGCCCCCCGCCGCCC
AGGCTGGGCAGCCGGCCTTCGTCTTGCTCTGCCACTTGACCGAAAAGGAG
GCTTGCCTGGTGGTGCGTGGTCCCGACCGGGCGCAGGATGTTCTCGTCGA
CATCCGGGGCCTGCCCATGCCCTTTCCCCTCGCGGGGGAGGGGGCCGGGA
GCGGGGAGAAGGGCAGTCAGGACAAGGAGAGCGGGTGGGCGAACGTCTCG
ACGGAGTGGATGGCTTCCTGTGGAGCGGCCGAGGCGGGCCATTGGCTCTT
CAGCGAGGTCTACCCCCATCTCCATCGGCTGGCCAAGGAGGGCTACTCCT
TGACGCTGGCGGGGCACTCGGCGGGCGGGGCGGTGGCGGCCTTGCTGGGG
GTGCTGATGCGAGAGGAAGGGATGACGGAGGGGTTGCGGTGCTACACATT
TGGTAGCCCTGCCTGCGTGAACCAGAAGCTGGCTCAAGTGTGCGAGGCCT
TCGTGACCACGGTGGTGCTGCACGACGACGTCATTCCGCGGGTGACACCC
ACGGGCGTGCGGGGCCTCTTGAAAGACCTGCTCTCGGAGCGGGAGAGGGC
AGAGCAGCATTGGCAGGACGACGTGGAGGCGATCATCGTCAGGAGCAAAG
GCCATTGGGCGCCACGGTGGAGGCGGGTCTTGTCGCGGGGGGGGCGGGAG
AAGGGGGCGGCCCCCGGGAGCCGGTCACTGTCCTTCATTCGGAGCGAGGA
CGAGGGGGAGAGGGGGGAAGGTGAGGGGGAAGGGTGGACTGGCAGGACGA
GGGAAGGTGAGGGAAAAGAGGGAGGGGTTGGGGAGGGCGCGGGGGAGGGG
TGGGACAGCTGCGACGACGACCTCGGGAACTACTGGGGCGTGGGCTGCAC
GCGTGACGTGGTGTCCGTGGGCTCCGGCGCCGCCTCGAACCGTTACTCGA
TCCGGCACGAGGACGGCACCACCACCACGGTGAACCTGGCCCTCGCCCGG
CGCCGGCTCTTGGATTCGGGCGGGGACGCGGCGGCTGACCGAGGGAGCTC
GGTCTCGAAAAATGTCACGGGCGCCTGCCCCGCGCCTTGCGGGCTTGGCG
AGGCGGGCGTCAACTCCGCGCTCACGTCATTGGGGACTTCTGTTCCGGGC
CTGGGGGCTGCCTCGTCTCCCGGGGCTGAGAGTGGGGAGGCTGGAAGGAG
AGAAGGG back to topprotein sequence of rna6086 >rna6086-protein ID=rna6086-protein|Name=rna6086|organism=Nannochloropsis gaditana|type=polypeptide|length=367bp
MGARGQRGRGRKRRRGWGTARGRCRRGRARERKGRSCRAGGSDRGMPPPA
SSDGMGAEEEGGAGLEQSLALWNLFGSEGSEAAAAAPGREPDSRAVLEVE
GVPVDTKQVSVSTTAPTAAADSTCSFSSSTSSLSSSSPSPPAPVTASTGQ
LSRQSLASSWRGALTIPAGKEGGREGGSKSEEKEEGNEEEEEEEEEEEEE
EEEEDCGILVEDVSLPELYPPGRLVHIYSYRGVYKACMPPRSFPGLRRIP
LQGNLLKDHAPTAYFSALCEVIDVRRAPQPPPAWEGFKEKEACVCCAVDL
TWQRATASEAHRDREKHNCRCCGGLVCQDCSRHRRALPSIGLSAPARVCD
RCFFGGKQSAVEATERG back to topmRNA from alignment at CM002467.1:538091..539866+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6086 ID=rna6086|Name=rna6086|organism=Nannochloropsis gaditana|type=mRNA|length=1776bp|location=Sequence derived from alignment at CM002467.1:538091..539866+ (Nannochloropsis gaditana)
CTAGGCTTGGGGGGTGGAGACGACACGGACGAttggggggaggatggggg
cgagggggcagagagggcgggggaggaagcgcaggcGTGGATGGGGGACC
GCACGGGGTCGctgcaggagggggagagcgagggagaggaaggggaggag
ctgcagggcAGGTGGCTCGGATCGAGGGATGCCCCCCCCAGCATCTTCGG
ACGGCATGGGcgccgaggaagaaggaggcgcggGCCTGGAGCAAAGCTTG
GCGCTCTGGAATTTGTTTGGGAGTGAGGggtcggaggcggcggcggcggc
gcccgGGAGAGAGCCGGACTCCCGGGCAGTGCTCGAGGTAGAGGGCGTGC
CCGTGGACACGAAGCAAGTCTCCGTCAGCACCACCGCGCCCACCGCAGCT
GCCGACtccacctgctccttctcctcctccacctcctccttgtcctcgtc
gaGCCCATCGCCGCCGGCGCCTGTGACCGCCAGCACGGGCCAGCTGTCTC
GGCAATCTTTAGCTTCAAGTTGGCGGGGCGCCTTGACCATCCccgctggg
aaggagggaggaagggagggaggaagcaaaagtgaggaaaaggaggaagg
aaacgaagaagaagaagaagaagaggaggaggaggaggaggaagaggagg
aagaggactgcGGGATactggtggaggacgtgagccTCCCAGAGCTATAC
CCGCCGGGCCGTCTGGTTCATATCTACAGCTACCGCGGCGTCTATAAGGC
CTGCATGCCCCCCCGAAGCTTCCCGGGCCTGCGCCGCATCCCCCTGCAGG
GAAATTTGCTGAAGGACCACGCCCCCACGGCCTACTTCTCCGCTCTCTGC
GAAGTGATCGACGTCCGCCGAGccccgcagccgccgcccgcgtgggaggg
gttcaaggagaaggaggcctgCGTCTGCTGTGCGGTGGATTTGACCTGGC
AgcgggccacggccagcgAGGCGCATCGGGACCGGGAGAAGCACAATTGT
CGCTGCTGCGGTGGACTGGTTTGTCAGGATTGCTCCCGGCATCGTCGGGC
CTTGCCCTCCATCGGGCTCTCTGCGCCTGCTCGGGTCTGCGACCGGTGTT
TTTTCGGGGGAAAGCAGTCGGCagtggaggcgacggagcgTGGATGAGGC
tttgggggagaaggaggaggaaaaggggaaggaatggggcgtggccgagg
gagagggtgcgcTCAGTCAAGGGGTTGCATAGCCGACATAGGGCGCATAA
GTGCCCTGCACAGGAATATAATTACATAGTGacgaaggaaaaagatgCTG
GATATAAGAAATGAAAAATGGAAGCACAGTGTAATGTATAAAGTAATGAT
GGGAAGGCTGAACATAGGAAAGGGTGCCAGGGAAAAAGTGAACACGAAGT
GCGCAGAAGGACGCAGGTACAGAAACGCGAGGCGCGGGATTATACATAAt
cagagaagaagaaatggtTGGCTTGTGCCAGCGAGGTGCGGGGCGTGCAT
GATACGAGAGTCAAAGGACGAGGGCCGACCGGGCCGGTAAGCCGCTGGTC
ACGTTCGTGATTGACAGAGCCAAACATTCACATTATCCGGGCAAGTGCTG
TCGAAAATGCTTTTGTCTCATGAGAATCAGTCACATATTCAATTGTGCCT
CGGTATACGATTGTAAAGAATGGAGGAGACAGCTCCACGAAATGCGAGGG
ACTACAGAAAAGCAATAAATCGTGTGTGAAAAAGATATCGTTATTCCTTC
GGGTCGAATTTCTTCAAAAATCTATA back to topCoding sequence (CDS) from alignment at CM002467.1:538091..539866+ >rna6086 ID=rna6086|Name=rna6086|organism=Nannochloropsis gaditana|type=CDS|length=1104bp|location=Sequence derived from alignment at CM002467.1:538091..539866+ (Nannochloropsis gaditana)
atgggggcgagggggcagagagggcgggggaggaagcgcaggcGTGGATG
GGGGACCGCACGGGGTCGctgcaggagggggagagcgagggagaggaagg
ggaggagctgcagggcAGGTGGCTCGGATCGAGGGATGCCCCCCCCAGCA
TCTTCGGACGGCATGGGcgccgaggaagaaggaggcgcggGCCTGGAGCA
AAGCTTGGCGCTCTGGAATTTGTTTGGGAGTGAGGggtcggaggcggcgg
cggcggcgcccgGGAGAGAGCCGGACTCCCGGGCAGTGCTCGAGGTAGAG
GGCGTGCCCGTGGACACGAAGCAAGTCTCCGTCAGCACCACCGCGCCCAC
CGCAGCTGCCGACtccacctgctccttctcctcctccacctcctccttgt
cctcgtcgaGCCCATCGCCGCCGGCGCCTGTGACCGCCAGCACGGGCCAG
CTGTCTCGGCAATCTTTAGCTTCAAGTTGGCGGGGCGCCTTGACCATCCc
cgctgggaaggagggaggaagggagggaggaagcaaaagtgaggaaaagg
aggaaggaaacgaagaagaagaagaagaagaggaggaggaggaggaggaa
gaggaggaagaggactgcGGGATactggtggaggacgtgagccTCCCAGA
GCTATACCCGCCGGGCCGTCTGGTTCATATCTACAGCTACCGCGGCGTCT
ATAAGGCCTGCATGCCCCCCCGAAGCTTCCCGGGCCTGCGCCGCATCCCC
CTGCAGGGAAATTTGCTGAAGGACCACGCCCCCACGGCCTACTTCTCCGC
TCTCTGCGAAGTGATCGACGTCCGCCGAGccccgcagccgccgcccgcgt
gggaggggttcaaggagaaggaggcctgCGTCTGCTGTGCGGTGGATTTG
ACCTGGCAgcgggccacggccagcgAGGCGCATCGGGACCGGGAGAAGCA
CAATTGTCGCTGCTGCGGTGGACTGGTTTGTCAGGATTGCTCCCGGCATC
GTCGGGCCTTGCCCTCCATCGGGCTCTCTGCGCCTGCTCGGGTCTGCGAC
CGGTGTTTTTTCGGGGGAAAGCAGTCGGCagtggaggcgacggagcgTGG
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