EWM24633.1, cds6041 (CDS) Nannochloropsis gaditana

Overview
NameEWM24633.1
Unique Namecds6041
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:459785..460159 -
Alignment locationCM002467.1:458732..459625 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24633.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100117g17.412.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:459785..460159 -
CM002467.1supercontigCM002467.1:458732..459625 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM24633.1 vs. NCBI_GenBank
Match: gi|585106153|gb|EWM24633.1| (hypothetical protein Naga_100117g17 [Nannochloropsis gaditana])

HSP 1 Score: 871.307 bits (2250), Expect = 0.000e+0
Identity = 422/422 (100.00%), Postives = 422/422 (100.00%), Query Frame = 0
Query:    1 MPLLPFPSIIVGMPTSLLMLLMLSPVPTEGFLTRAPMTLRKIQHTAPSSAPSCGPAGDCIRRQHVIARLSARPEDEGINNEGSNSGLGAGEHDKEPPNLEHGVSPMPTGGESEYEYQSEYTDQQAEIEYLGDDELLARYRADMQNSNDQWQLNLFLKAQTGIWSGVWSEYTPEPNSGPNGETVLRMTNIYKGRHECEGDYDARSVWWREVTLLHAADGGPLEPVVVGERRMEPTSFRGELGAMAADNVFSCSHVRFKGATEVFEAEIWIRQGDYRTRVTFVYKSPDPAYAFQASKVLVKKERLGKEGPTAEEPELFGSSGRGIYDPNARVPGSWVLSLHGGLSLAFPPTLPRGQRGAVIVDWTAGTMRFQADRIFDRPDGTLGSLEVTQIGTQDSLTFTIPDDADAGVAKAAASADTNGGEK 422
            MPLLPFPSIIVGMPTSLLMLLMLSPVPTEGFLTRAPMTLRKIQHTAPSSAPSCGPAGDCIRRQHVIARLSARPEDEGINNEGSNSGLGAGEHDKEPPNLEHGVSPMPTGGESEYEYQSEYTDQQAEIEYLGDDELLARYRADMQNSNDQWQLNLFLKAQTGIWSGVWSEYTPEPNSGPNGETVLRMTNIYKGRHECEGDYDARSVWWREVTLLHAADGGPLEPVVVGERRMEPTSFRGELGAMAADNVFSCSHVRFKGATEVFEAEIWIRQGDYRTRVTFVYKSPDPAYAFQASKVLVKKERLGKEGPTAEEPELFGSSGRGIYDPNARVPGSWVLSLHGGLSLAFPPTLPRGQRGAVIVDWTAGTMRFQADRIFDRPDGTLGSLEVTQIGTQDSLTFTIPDDADAGVAKAAASADTNGGEK
Sbjct:    1 MPLLPFPSIIVGMPTSLLMLLMLSPVPTEGFLTRAPMTLRKIQHTAPSSAPSCGPAGDCIRRQHVIARLSARPEDEGINNEGSNSGLGAGEHDKEPPNLEHGVSPMPTGGESEYEYQSEYTDQQAEIEYLGDDELLARYRADMQNSNDQWQLNLFLKAQTGIWSGVWSEYTPEPNSGPNGETVLRMTNIYKGRHECEGDYDARSVWWREVTLLHAADGGPLEPVVVGERRMEPTSFRGELGAMAADNVFSCSHVRFKGATEVFEAEIWIRQGDYRTRVTFVYKSPDPAYAFQASKVLVKKERLGKEGPTAEEPELFGSSGRGIYDPNARVPGSWVLSLHGGLSLAFPPTLPRGQRGAVIVDWTAGTMRFQADRIFDRPDGTLGSLEVTQIGTQDSLTFTIPDDADAGVAKAAASADTNGGEK 422          
BLAST of EWM24633.1 vs. NCBI_GenBank
Match: gi|299116625|emb|CBN76250.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 122.865 bits (307), Expect = 4.200e-27
Identity = 109/330 (33.03%), Postives = 152/330 (46.06%), Query Frame = 0
Query:  112 SEYEYQSEYTDQQAEIEYLGDDELLARYRADMQNSNDQWQLNLFLKAQTGIWSGVWSEYTPEP-NSGPNGET-VLRMTNIYKGRHECEGDYDARSVWWR-EVTLLH-----AADGGPLEPVVVGERRMEPT---------SFRGELGAMAADNVFSCSHVRF--KGATEVFEAEIWIRQGDYRTRVTFVYK----------------SPDPAYAFQAS----KVLVKKERLGKEGP--TAEEPELFGSSGRGIYDPNA--RVPGSWVLSLHGGLSLAFPPTLPRGQRGAVIVDWTAGTMRFQADRIFDRPDGTLGSLEVTQIGTQDSLTF 398
            SEY Y+ E+  Q  E     D+E LAR+R +   +ND+WQ   +     G W G W EY  E  ++G + E+ +  M  I  G+         R V    E T +       A GG  +  V  E    P          SFRG  G     N ++ +       G  +    E+ +R  D R R  F Y                  P+ A A   S    +V V +E L +  P    +EPEL+GS+G+G+YDP +  R P  + +   GGL++ FP  +  GQ G   VDWTAG+ R+QADR+FD  DG+L  LEVT+IGTQD+  F
Sbjct:  141 SEYGYEPEFELQGEEPN--ADEETLARWRLEKLLANDRWQFGKYGTQNVGNWIGSWQEYVAEDLSAGSDPESDIGAMIGIIPGKKFVATTKITRRVIESAEDTKIFEHEQGQATGGEGQGAVGYESEACPQPVVETLFSDSFRGGNGTQVVGNAYTSAETLAVAAGGADGPWIEVGLRVQDVRMRCVFEYGPGAGGSVDAEGGGGVPVPEAAAAAAGSTSIRRVFVVREGLDRLPPEDADKEPELYGSAGKGLYDPPSLSRSPLYFSIYAEGGLTMRFPLRVEEGQGGVFSVDWTAGSRRYQADRVFDVLDGSLRRLEVTEIGTQDAEVF 468          
BLAST of EWM24633.1 vs. NCBI_GenBank
Match: gi|922855773|gb|KOO24191.1| (conserved unknown protein [Chrysochromulina sp. CCMP291])

HSP 1 Score: 91.6633 bits (226), Expect = 1.309e-16
Identity = 90/307 (29.32%), Postives = 140/307 (45.60%), Query Frame = 0
Query:  104 SPMPTGGESEYEYQSEYTDQQAEIEY-LGDDELLARYRADMQNSNDQWQLNLFLKAQTGIWSGVWSEYTPEPNSGPNGETVLRMTNIYKGRHECEGDYDARSVWWREVTLLHAADGGPLEPVVVGERRMEPTSFRGELGAMAADNVFSCSHVRFKGATEVFEAEIWIRQGDY------RTRVTFVYKSPD-PAYAFQ----ASKVLVKKERLGKE--GPTAEEPELFGSSGRGIYDPNARVPGSWV-LSLHGGLSLAFPPTLPRGQRGAVIVDWTAGTMRFQADRIFDRPDGTLGSLEVTQIGTQDS 395
            SP  +  ++E + + +   Q   IE  + D+ LL +YR    + N +WQLN F ++Q G W+G    Y  + ++G      L+ T        CE    A +      +L  AA    LE        +   +FR E+G MA  + FS S        E   A   +           R R   +Y +    A A +    A   +V++ R G +     A   +L G+ GRG+YDP       ++ L L GG++LAFP ++  G  G + +DW AG+MR+Q DR +   DG+L SLE+T+I   D+
Sbjct:  116 SPKISRMDTEEQRKDDSAFQSDTIEEDIEDEALLEQYRQKRWDDNARWQLNTFAQSQLGKWAGHMELYLAD-DAGRMLPKELKSTAC-----SCEARVCASNTIGLTESLPEAAAQLTLEA------ELGLAAFRPEVGNMAVASAFSVSRRGADVGGESARAGEPLLLELALGEAERRVRCKLLYVADRGEAAAVRPYSIAQLAIVREVRGGGQFIDGNAGSADLDGTPGRGLYDPPPGDKSGYISLYLEGGMTLAFPTSVAAGAAGVISLDWIAGSMRYQIDRKWKVFDGSLSSLELTEIRKDDA 410          
BLAST of EWM24633.1 vs. NCBI_GenBank
Match: gi|873240218|emb|CEL93669.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 67.0106 bits (162), Expect = 1.766e-8
Identity = 88/341 (25.81%), Postives = 130/341 (38.12%), Query Frame = 0
Query:  123 QQAEIEY--LGDDELLARYRADMQNSNDQWQLNLFLKAQTGIWSGVWSEY------------TPEPNSGPNGETVLRMTNIYKGRHECEGDYDARSVWWREVTLLHA----ADGG---------PLEPVVVGERRMEPTSFRGELGAMAADNVF-------------------------SCSHVRFKGATEVFEAEIWIRQGDYRTRVTFVYKS----PD----------PAYAFQASKVLVKKERLGKEGPTAEEPELFGSSGRGIYD-PNARVPGSWV-LSLHGGLSLAFPPTLPRGQRGAVIVDWTAGTMRFQADRIFDRPDGTLGSLEVTQIGTQDS 395
            QQ   EY  L DDE L R RA     ND WQ N  ++   G W GV   Y            T   +S P     + + N                + +R + +  +     DGG         PL   VV      P  FR + G     N F                         S +  +     ++   E+ I+    R R  F ++     PD          P   +   ++ V +ERLG E P A E   +G  G G+YD P  R+  ++  L  +G L+L+FP ++  G+ GA+ +DWT    R+QADR F     +L + E T+I  +D+
Sbjct:   60 QQYGDEYDGLDDDEYLRR-RARELADNDAWQFNKMVE-HVGTWYGVAQIYQIAKAKQGEEGTTAAASSSPLPAPFIILKNETASIETTIAVKSDPKLGYRLLRITSSQVPVKDGGGAGSARQGYPLPMEVV----YYPHDFRAKQGNQIVGNAFTLAGFPSPSWVPAPQSASVPLAPILSSADDKINSQDDIIWTEVGIKSEGRRVRGVFGFQRESTPPDTDAETETGTPPRKVWTLRQLAVIRERLG-EPPLANEDAFYGEWGHGLYDKPAERIGQNYFELFFNGHLTLSFPLSIGEGEAGALSLDWTPDMRRYQADRKFRTYGPSLRTFETTEILARDA 393          
BLAST of EWM24633.1 vs. NCBI_GenBank
Match: gi|676396249|ref|XP_009041402.1| (hypothetical protein AURANDRAFT_72648 [Aureococcus anophagefferens] >gi|323447945|gb|EGB03850.1| hypothetical protein AURANDRAFT_72648 [Aureococcus anophagefferens])

HSP 1 Score: 64.3142 bits (155), Expect = 2.180e-7
Identity = 83/303 (27.39%), Postives = 115/303 (37.95%), Query Frame = 0
Query:  134 ELLARYRADMQNSNDQWQLNLFLKAQTGIWSGVWSEYTPEPNSGPNGETVLRMTNI-YKGRHECEGDYDARSVWWRE-----VTLLHAADGGPLEPVV-----VGERRMEPTSFR------GELGAMAADNVFSCSHVRFKGATEVFEAEIWIRQGDYRTRVTFVY-KSPDPAYAFQASKVLVKKERLGKEGPTAEEPELFGSSGR-GIYDPNARV------------PGSWVLSLHGGLSLAFPPTLPRGQRG-------AVIVDWTAGTMRFQADRIFDRPDGTLGSLEVTQIGTQDSLTF 398
            E LA  R   + S D WQ + F KA  G W G    Y     +     T     ++  +        +DA ++   E     V L    DG            +G   ++P +FR      GELG  AA N  + S  R  G  +    ++W R  D    +   Y K+   A+AF           L +  P        G +   G+YD + R+             G   L L G ++ AFP TL  G+ G        V +D  AG MR Q DR+FD P G L S E+T I   D+  F
Sbjct:  205 EALAERRRVNRRSQDCWQFDQFTKAFAGSWRGAGERYVAAGRALAVAATFDAKLDLERRDDATVASAHDAWALAVSEQRTNFVVLDSLGDGAAEPAREAAAPPLGAVTLKPATFRAEARDGGELGGTAA-NGEAFSTARVDG--DALVVDVWARAADDALSLRVAYEKTTGGAWAFACCD-------LARWCPAGGAAAPAGDALGTGLYDVHRRLRDMATRGALDESVGIHELRLPGRVTAAFPRTLDPGRGGLNANGGGVVSLDLVAGDMRIQVDRVFDTPLGDLASFEITDILVDDAEKF 497          
The following BLAST results are available for this feature:
BLAST of EWM24633.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585106153|gb|EWM24633.1|0.000e+0100.00hypothetical protein Naga_100117g17 [Nannochlorops... [more]
gi|299116625|emb|CBN76250.1|4.200e-2733.03conserved unknown protein [Ectocarpus siliculosus][more]
gi|922855773|gb|KOO24191.1|1.309e-1629.32conserved unknown protein [Chrysochromulina sp. CC... [more]
gi|873240218|emb|CEL93669.1|1.766e-825.81unnamed protein product [Vitrella brassicaformis C... [more]
gi|676396249|ref|XP_009041402.1|2.180e-727.39hypothetical protein AURANDRAFT_72648 [Aureococcus... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6056rna6056Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications