rna6040, rna6040 (mRNA) Nannochloropsis gaditana

Overview
Namerna6040
Unique Namerna6040
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length618
Alignment locationCM002467.1:428690..429850 -

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Properties
Property NameValue
Productring finger protein
Orig transcript idgnl|cribi|Naga_100055g14.7340.mrna
Orig protein idgnl|cribi|Naga_100055g14.7340
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:428690..429850 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100055g14gene5835Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6040rna6040-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24656.1cds6025Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6040 ID=rna6040|Name=rna6040|organism=Nannochloropsis gaditana|type=mRNA|length=618bp
ATGCCCTGCAATCTCCTCAACGCTGCTCGCATGGGTAACCTCCTTACAAA
GGGGGTGACATACGAGGCCGACAACGTTACCATCAAGCGATGCCTTTTCT
GTGACATAGCTGCTGACAAGCAAGGCTCCCGCAAAACGCCAATAGCGTAC
GAGGATGAACAGGTAGTGGTCTTTGCCCCCCTGGAGAAATGCGCCTTGGA
ACACTGGCTTGTGGTTCCCCGGGCTCACATCCGGAATGCCACTACGCTGC
AGCCTACGGACTTGCCCATACTCAAATATATGCGGGACGTGGGTTATCAA
GTGCTCAAGGATAAGCAACCGGATGTAAATCTCTCAAAAATGCAGTTTTG
CTTTCATATCGAGCCCTTCAACTCTATTGCCCACATACATCTCCATTGTC
AGGTGCCGCCTTTCATCACGCCGATTTCTGCGTTTAAGTACAAGGAGGGC
ACTTCTTGGTGTTGGAGCCACGACGCAGTTTGTTCACATGTAGCAATTGA
GACAACAACGCGTGGCTGTCCGGCGACCGCCTGTTATTGCAAGGCTTTTA
GATGGATTTATTTATTTATTAAATCCCTTCATAACTGGTGGACAATATTA
TGTCGTGTCCAAAAATAA
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protein sequence of rna6040

>rna6040-protein ID=rna6040-protein|Name=rna6040|organism=Nannochloropsis gaditana|type=polypeptide|length=350bp
MGRVAEGCGNGAVEFHCVRNKRRHIITHDQMAVNSLPEQVVVSSMPDISC
RRDKVKRLASPTMRNMHEPRTTGRAAGGSRGATPTNLHGNMNSSSQTDSR
FDCNVCLSEVGDPVVTLCGHLYCWPCLYRWLSTNHTCPVCKAGVTKENVI
PLYGRGSEQVDPRTKTRRGGAIGREEATDVPGRPAAQRPEARPEADSFIG
GASAFVGGIPFNSFGAAHHYTGGTIGGLGPPGRNSAVSFSAGLGFFPSLF
GLQFQTFTPSSSSSVAATQGVGFNGSGNGSTADEAQQAFLSKLLLTLGIF
TLGVLIQLTRKKKEGKISDGSDRHVRRQEDAKMIEHRKENCQGTIQFIHL
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mRNA from alignment at CM002467.1:428690..429850-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6040 ID=rna6040|Name=rna6040|organism=Nannochloropsis gaditana|type=mRNA|length=1161bp|location=Sequence derived from alignment at CM002467.1:428690..429850- (Nannochloropsis gaditana)
ATGGGGAGGGTGGCGGAGGGGTGCGGGAATGGGGCCGTTGAGTTTCATTG
CGTTCGTAACAAGCGAAGACACATAATTACTCATGACCAAATGGCCGTGA
ATTCTCTTCCTGAACAAGTTGTTGTGTCTAGCATGCCTGATATCTCATGT
CGCAGGGACAAAGTCAAAAGGCTAGCGTCCCCTACCATGTTCTGTTCCTT
CTCAATCCGTCGACAAATTCCTAATGCATCAATCACCCATAGAGGAGAAA
TATGCATGAACCCCGGACCACAGGAAGAGCAGCAGGGGGTAGCCGTGGTG
CCACTCCGACGAATCTGCATGGGAACATGAACTCAAGCTCACAAACTGAC
TCGCGATTTGACTGCAACGTGTGCCTGTCCGAGGTGGGGGATCCCGTCGT
AACCTTGTGCGGGCACTTGTACTGCTGGCCATGCTTGTACCGGTGGCTGA
GCACAAATCATACTTGTCCCGTGTGCAAGGCAGGCGTGACGAAGGAGAAC
GTGATTCCTCTCTACGGGAGGGGAAGCGAGCAGGTGGATCCAAGGACCAA
GACCCGTCGAGGCGGGGCGATCGGTAGGGAGGAAGCAACAGACGTCCCAG
GACGGCCTGCAGCACAACGTCCTGAGGCACGACCTGAAGCAGACTCATTT
ATTGGCGGCGCATCAGCATTCGTGGGTGGAATTCCTTTCAATTCCTTCGG
CGCAGCTCATCATTACACGGGCGGCACCATAGGAGGACTGGGACCTCCCG
GGAGAAACAGTGCAGTCTCCTTTTCGGCTGGCTTGGGTTTTTTCCCCTCA
TTGTTTGGACTACAATTTCAAACTTTTACGCCATCATCATCTTCGTCTGT
GGCTGCGACGCAAGGGGTCGGATTTAATGGAAGCGGGAATGGTTCTACAG
CCGATGAAGCACAGCAAGCATTTCTTTCAAAGCTTCTTCTTACTCTAGGA
ATATTTACTCTTGGTGTGCTCGTTTTTTGCTGAAGTAGTCTCGATTGAAA
TCAAGAACTTTGTAAATGTGTAGATACAACTAACGCGAAAAAAAAAAGAA
GGAAAGATTTCTGATGGGTCTGATAGGCACGTCAGGAGACAAGAAGACGC
TAAAATGATTGAACACAGGAAAGAAAATTGTCAAGGCACCATTCAATTCA
TCCATCTTTAA
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Coding sequence (CDS) from alignment at CM002467.1:428690..429850-

>rna6040 ID=rna6040|Name=rna6040|organism=Nannochloropsis gaditana|type=CDS|length=3159bp|location=Sequence derived from alignment at CM002467.1:428690..429850- (Nannochloropsis gaditana)
ATACAACTAACGCGAAAAAAAAAAGAAGGAAAGATTTCTGATGGGTCTGA
TAGGCACGTCAGGAGACAAGAAGACGCTAAAATGATTGAACACAGGAAAG
AAAATTGTCAAGGCACCATTCAATTCATCCATCTTTAAGAGAAATATGCA
TGAACCCCGGACCACAGGAAGAGCAGCAGGGGGTAGCCGTGGTGCCACTC
CGACGAATCTGCATGGGAACATGAACTCAAGCTCACAAACTGACTCGCGA
TTTGACTGCAACGTGTGCCTGTCCGAGGTGGGGGATCCCGTCGTAACCTT
GTGCGGGCACTTGTACTGCTGGCCATGCTTGTACCGGTGGCTGAGCACAA
ATCATACTTGTCCCGTGTGCAAGGCAGGCGTGACGAAGGAGAACGTGATT
CCTCTCTACGGGAGGGGAAGCGAGCAGGTGGATCCAAGGACCAAGACCCG
TCGAGGCGGGGCGATCGGTAGGGAGGAAGCAACAGACGTCCCAGGACGGC
CTGCAGCACAACGTCCTGAGGCACGACCTGAAGCAGACTCATTTATTGGC
GGCGCATCAGCATTCGTGGGTGGAATTCCTTTCAATTCCTTCGGCGCAGC
TCATCATTACACGGGCGGCACCATAGGAGGACTGGGACCTCCCGGGAGAA
ACAGTGCAGTCTCCTTTTCGGCTGGCTTGGGTTTTTTCCCCTCATTGTTT
GGACTACAATTTCAAACTTTTACGCCATCATCATCTTCGTCTGTGGCTGC
GACGCAAGGGGTCGGATTTAATGGAAGCGGGAATGGTTCTACAGCCGATG
AAGCACAGCAAGCATTTCTTTCAAAGCTTCTTCTTACTCTAGGAATATTT
ACTCTTGGTGTGCTCATGGGGAGGGTGGCGGAGGGGTGCGGGAATGGGGC
CGTTGAGTTTCATTGCGTTCGTAACAAGCGAAGACACATAATTACTCATG
ACCAAATGGCCGTGAATTCTCTTCCTGAACAAGTTGTTGTGTCTAGCATG
CCTGATATCTCATGTCGCAGGGACAAAGTCAAAAGGCTAGCGTCCCCTAC
CATATACAACTAACGCGAAAAAAAAAAGAAGGAAAGATTTCTGATGGGTC
TGATAGGCACGTCAGGAGACAAGAAGACGCTAAAATGATTGAACACAGGA
AAGAAAATTGTCAAGGCACCATTCAATTCATCCATCTTTAAGAGAAATAT
GCATGAACCCCGGACCACAGGAAGAGCAGCAGGGGGTAGCCGTGGTGCCA
CTCCGACGAATCTGCATGGGAACATGAACTCAAGCTCACAAACTGACTCG
CGATTTGACTGCAACGTGTGCCTGTCCGAGGTGGGGGATCCCGTCGTAAC
CTTGTGCGGGCACTTGTACTGCTGGCCATGCTTGTACCGGTGGCTGAGCA
CAAATCATACTTGTCCCGTGTGCAAGGCAGGCGTGACGAAGGAGAACGTG
ATTCCTCTCTACGGGAGGGGAAGCGAGCAGGTGGATCCAAGGACCAAGAC
CCGTCGAGGCGGGGCGATCGGTAGGGAGGAAGCAACAGACGTCCCAGGAC
GGCCTGCAGCACAACGTCCTGAGGCACGACCTGAAGCAGACTCATTTATT
GGCGGCGCATCAGCATTCGTGGGTGGAATTCCTTTCAATTCCTTCGGCGC
AGCTCATCATTACACGGGCGGCACCATAGGAGGACTGGGACCTCCCGGGA
GAAACAGTGCAGTCTCCTTTTCGGCTGGCTTGGGTTTTTTCCCCTCATTG
TTTGGACTACAATTTCAAACTTTTACGCCATCATCATCTTCGTCTGTGGC
TGCGACGCAAGGGGTCGGATTTAATGGAAGCGGGAATGGTTCTACAGCCG
ATGAAGCACAGCAAGCATTTCTTTCAAAGCTTCTTCTTACTCTAGGAATA
TTTACTCTTGGTGTGCTCATGGGGAGGGTGGCGGAGGGGTGCGGGAATGG
GGCCGTTGAGTTTCATTGCGTTCGTAACAAGCGAAGACACATAATTACTC
ATGACCAAATGGCCGTGAATTCTCTTCCTGAACAAGTTGTTGTGTCTAGC
ATGCCTGATATCTCATGTCGCAGGGACAAAGTCAAAAGGCTAGCGTCCCC
TACCATATACAACTAACGCGAAAAAAAAAAGAAGGAAAGATTTCTGATGG
GTCTGATAGGCACGTCAGGAGACAAGAAGACGCTAAAATGATTGAACACA
GGAAAGAAAATTGTCAAGGCACCATTCAATTCATCCATCTTTAAGAGAAA
TATGCATGAACCCCGGACCACAGGAAGAGCAGCAGGGGGTAGCCGTGGTG
CCACTCCGACGAATCTGCATGGGAACATGAACTCAAGCTCACAAACTGAC
TCGCGATTTGACTGCAACGTGTGCCTGTCCGAGGTGGGGGATCCCGTCGT
AACCTTGTGCGGGCACTTGTACTGCTGGCCATGCTTGTACCGGTGGCTGA
GCACAAATCATACTTGTCCCGTGTGCAAGGCAGGCGTGACGAAGGAGAAC
GTGATTCCTCTCTACGGGAGGGGAAGCGAGCAGGTGGATCCAAGGACCAA
GACCCGTCGAGGCGGGGCGATCGGTAGGGAGGAAGCAACAGACGTCCCAG
GACGGCCTGCAGCACAACGTCCTGAGGCACGACCTGAAGCAGACTCATTT
ATTGGCGGCGCATCAGCATTCGTGGGTGGAATTCCTTTCAATTCCTTCGG
CGCAGCTCATCATTACACGGGCGGCACCATAGGAGGACTGGGACCTCCCG
GGAGAAACAGTGCAGTCTCCTTTTCGGCTGGCTTGGGTTTTTTCCCCTCA
TTGTTTGGACTACAATTTCAAACTTTTACGCCATCATCATCTTCGTCTGT
GGCTGCGACGCAAGGGGTCGGATTTAATGGAAGCGGGAATGGTTCTACAG
CCGATGAAGCACAGCAAGCATTTCTTTCAAAGCTTCTTCTTACTCTAGGA
ATATTTACTCTTGGTGTGCTCATGGGGAGGGTGGCGGAGGGGTGCGGGAA
TGGGGCCGTTGAGTTTCATTGCGTTCGTAACAAGCGAAGACACATAATTA
CTCATGACCAAATGGCCGTGAATTCTCTTCCTGAACAAGTTGTTGTGTCT
AGCATGCCTGATATCTCATGTCGCAGGGACAAAGTCAAAAGGCTAGCGTC
CCCTACCAT
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Synonyms
Publications