EWM24656.1, cds6025 (CDS) Nannochloropsis gaditana

Overview
NameEWM24656.1
Unique Namecds6025
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:429663..429850 -
Alignment locationCM002467.1:428880..429606 -
Alignment locationCM002467.1:428690..428827 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24656.1
Productring finger protein
Orig transcript idgnl|cribi|Naga_100055g14.7340.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:429663..429850 -
CM002467.1supercontigCM002467.1:428880..429606 -
CM002467.1supercontigCM002467.1:428690..428827 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR017907Znf_RING_CS
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
Homology
BLAST of EWM24656.1 vs. NCBI_GenBank
Match: gi|585106178|gb|EWM24656.1| (ring finger protein [Nannochloropsis gaditana])

HSP 1 Score: 724.161 bits (1868), Expect = 0.000e+0
Identity = 350/350 (100.00%), Postives = 350/350 (100.00%), Query Frame = 0
Query:    1 MGRVAEGCGNGAVEFHCVRNKRRHIITHDQMAVNSLPEQVVVSSMPDISCRRDKVKRLASPTMRNMHEPRTTGRAAGGSRGATPTNLHGNMNSSSQTDSRFDCNVCLSEVGDPVVTLCGHLYCWPCLYRWLSTNHTCPVCKAGVTKENVIPLYGRGSEQVDPRTKTRRGGAIGREEATDVPGRPAAQRPEARPEADSFIGGASAFVGGIPFNSFGAAHHYTGGTIGGLGPPGRNSAVSFSAGLGFFPSLFGLQFQTFTPSSSSSVAATQGVGFNGSGNGSTADEAQQAFLSKLLLTLGIFTLGVLIQLTRKKKEGKISDGSDRHVRRQEDAKMIEHRKENCQGTIQFIHL 350
            MGRVAEGCGNGAVEFHCVRNKRRHIITHDQMAVNSLPEQVVVSSMPDISCRRDKVKRLASPTMRNMHEPRTTGRAAGGSRGATPTNLHGNMNSSSQTDSRFDCNVCLSEVGDPVVTLCGHLYCWPCLYRWLSTNHTCPVCKAGVTKENVIPLYGRGSEQVDPRTKTRRGGAIGREEATDVPGRPAAQRPEARPEADSFIGGASAFVGGIPFNSFGAAHHYTGGTIGGLGPPGRNSAVSFSAGLGFFPSLFGLQFQTFTPSSSSSVAATQGVGFNGSGNGSTADEAQQAFLSKLLLTLGIFTLGVLIQLTRKKKEGKISDGSDRHVRRQEDAKMIEHRKENCQGTIQFIHL
Sbjct:    1 MGRVAEGCGNGAVEFHCVRNKRRHIITHDQMAVNSLPEQVVVSSMPDISCRRDKVKRLASPTMRNMHEPRTTGRAAGGSRGATPTNLHGNMNSSSQTDSRFDCNVCLSEVGDPVVTLCGHLYCWPCLYRWLSTNHTCPVCKAGVTKENVIPLYGRGSEQVDPRTKTRRGGAIGREEATDVPGRPAAQRPEARPEADSFIGGASAFVGGIPFNSFGAAHHYTGGTIGGLGPPGRNSAVSFSAGLGFFPSLFGLQFQTFTPSSSSSVAATQGVGFNGSGNGSTADEAQQAFLSKLLLTLGIFTLGVLIQLTRKKKEGKISDGSDRHVRRQEDAKMIEHRKENCQGTIQFIHL 350          
BLAST of EWM24656.1 vs. NCBI_GenBank
Match: gi|971504956|dbj|GAQ93251.1| (E3 ubiquitin-protein ligase RNF5 [Klebsormidium nitens])

HSP 1 Score: 158.688 bits (400), Expect = 4.937e-43
Identity = 111/276 (40.22%), Postives = 139/276 (50.36%), Query Frame = 0
Query:   42 VSSMPDISCRRD---KVKRLASPTMRNMHEPRTTGRAAGGSRGATPTNLHGNMNSSSQTDSRFDCNVCLSEVGDPVVTLCGHLYCWPCLYRWL---STNHTCPVCKAGVTKENVIPLYGRGSEQVDPRTKTRRGGAIGREEATDVPGRPAAQRPEAR--PEADSFIGGASAFVGGIPFNSFGAAHHYTGGTIGGLGPPGRNSAVSFSAGLGFFPSLFGLQFQTFT--PSSSSSVAATQGVGFNGSGNGS-TADEAQQAFLSKLLLTLGIFTLGVLI 306
            VSS  D S RR    K    AS       +P T+G  AG  +G           S++     F+CN+CL    DPVVTLCGHL+CWPCLYRWL   S    CPVCKAGV+++NVIPLYGRG+   DPRTK   G         ++P RPA QRPE++  P+   F      F+ G P   FG                      + SAG G FPSL GLQ+Q +T  P  +   A   G G       + T ++ QQAFLS+LL+ LG F L  L+
Sbjct:   12 VSSEGDQSGRRQTDAKTGEQASMERETAAQPSTSG-GAGFEQG----EWSERTASANGEGGSFECNICLELAQDPVVTLCGHLFCWPCLYRWLRLHSQCKECPVCKAGVSEKNVIPLYGRGTSGEDPRTKPVSG--------PEIPRRPAGQRPESQRAPQMGPF-----GFMAG-PSAQFG--------------------NFTLSAGFGLFPSLLGLQWQAYTGDPMPAGFAAPDDGTGVAPVPRAALTPEQQQQAFLSRLLVMLGSFVLLCLL 248          
BLAST of EWM24656.1 vs. NCBI_GenBank
Match: gi|702467865|ref|XP_010029839.1| (PREDICTED: E3 ubiquitin-protein ligase RNF185 [Eucalyptus grandis])

HSP 1 Score: 148.673 bits (374), Expect = 1.915e-39
Identity = 88/246 (35.77%), Postives = 121/246 (49.19%), Query Frame = 0
Query:   74 RAAGGSRGATPTNLHGNMNSSSQTDSRFDCNVCLSEVGDPVVTLCGHLYCWPCLYRWLSTN---HTCPVCKAGVTKENVIPLYGRGSEQVDPRTKTRRGGAIGREEATDVPGRPAAQRPEAR--PEADSFIGGASAFVGGIPFNSFGAAHHYTGGTIGGLGPPGRNSAVSFSAGLGFFPSLFGLQFQTFTPSSSSSVAATQGVGFN------GSGNGSTADEAQQA--FLSKLLLTLGIFTLGVLI 306
             +  G   + P     + ++ S     F+CN+CL    DPV+TLCGHLYCWPCLYRWL+ +   H CPVCKA + +E ++PLYGRG  Q DPR+K+  G         D+P RP+ QRPE    P+A+ F      F+GG    ++    ++T  T  G                G  P+LF +QF  F  ++     +    GFN        G   TA   QQA   L  LLL +GIF +  L+
Sbjct:    2 ESGAGEWASKPAQSAASSDNGSNDAGDFECNICLELAQDPVLTLCGHLYCWPCLYRWLTHHSHCHECPVCKALIQEEKLVPLYGRGKTQTDPRSKSYPG--------IDIPNRPSGQRPETAPPPDANQFANYGFGFMGGFMPMAYARFGNFTLSTAFG----------------GLIPALFNVQFHGFQDATVYGTTSGYPYGFNTFHGGHAHGFPQTAVRGQQADTVLKNLLLLIGIFVVLALL 223          
BLAST of EWM24656.1 vs. NCBI_GenBank
Match: gi|298710098|emb|CBJ31812.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 145.976 bits (367), Expect = 2.611e-39
Identity = 88/161 (54.66%), Postives = 101/161 (62.73%), Query Frame = 0
Query:   96 QTDSRFDCNVCLSEVGDPVVTLCGHLYCWPCLYRWLSTNHT-CPVCKAGVTKENVIPLYGRGSEQVDPRTK-TRRGGAIGREEATDVPGRPAAQRPEARPEADSFIGGASAFVGGIPFNSFGAAHHYTGGTIGGLGPPGRNSAVSFSAGLGFFPSLFGLQF 254
            + DS F+CN+CL  V +PVVT CGHL+CWPCLYRWL+TN T CPVCKAGVT  NVIPLYGRG+E VDPRTK T R G         VP RP A+RP+A     + +  A+AF GG      G A       +G          V F AGLGFFPSLFGLQF
Sbjct:   10 EEDSYFECNICLDGVREPVVTRCGHLFCWPCLYRWLNTNQTECPVCKAGVTASNVIPLYGRGAESVDPRTKPTERDG---------VPSRPEAERPQA-----ARLRHANAFTGGFDVGGGGGAGPTGEDGVGNGA--VAGGHVHFQAGLGFFPSLFGLQF 154          
BLAST of EWM24656.1 vs. NCBI_GenBank
Match: gi|586769076|ref|XP_006856127.1| (E3 ubiquitin-protein ligase RNF185 isoform X2 [Amborella trichopoda] >gi|769797801|ref|XP_011627711.1| E3 ubiquitin-protein ligase RNF185 isoform X2 [Amborella trichopoda] >gi|548859986|gb|ERN17594.1| hypothetical protein AMTR_s00059p00153580 [Amborella trichopoda])

HSP 1 Score: 146.362 bits (368), Expect = 1.524e-38
Identity = 82/222 (36.94%), Postives = 111/222 (50.00%), Query Frame = 0
Query:  100 RFDCNVCLSEVGDPVVTLCGHLYCWPCLYRWLSTNHT----CPVCKAGVTKENVIPLYGRGSEQVDPRTKTRRGGAIGREEATDVPGRPAAQRPEARPEADS--FIGGASAFVGGIPFNSFGAAHHYTGGTIGGLGPPGRNSAVSFSAGLGFFPSLFGLQFQTFTPSSSSSVAATQGVGFNGS-------------GNGSTADEAQQAFLSKLLLTLGIFTL 302
             F+CN+C     DP+VTLCGHL+CWPCLY+WL  NH+    CPVCKA + +E ++PLYGRG  Q DPR+++  G        T++P RPA QRPE  P  D          F+GG P  +                   R    +FSAG G FP+LFG Q   F  +++   A     GF+                +  T  + Q+A LSK LL +G+F +
Sbjct:   35 NFECNICFELAQDPIVTLCGHLFCWPCLYKWLH-NHSQCQDCPVCKALIQEEKLVPLYGRGKNQTDPRSRSILG--------TNIPNRPAGQRPETAPPPDPNHMAHQTFGFMGGAPMAA------------------SRFGHFTFSAGFGLFPALFGFQMHGFPDATAYGAAPGFPYGFSNPFHGGHVHGHAHGFPHPPTQAQQQEAMLSKYLLVIGLFVI 229          
BLAST of EWM24656.1 vs. NCBI_GenBank
Match: gi|116781137|gb|ABK21979.1| (unknown [Picea sitchensis] >gi|148908424|gb|ABR17325.1| unknown [Picea sitchensis])

HSP 1 Score: 145.591 bits (366), Expect = 3.751e-38
Identity = 90/223 (40.36%), Postives = 112/223 (50.22%), Query Frame = 0
Query:  101 FDCNVCLSEVGDPVVTLCGHLYCWPCLYRWL---STNHTCPVCKAGVTKENVIPLYGRGSEQV-DPRTKTRRGGAIGREEATDVPGRPAAQRPEARPE--ADSFIGGASAFVGGIPFNSFGAAHHYTGGTIGGLGPPGRNSAVSFSAGLGFFPSLFGLQFQTFTPSSSSSVAATQGVGFNGSGNGS---------TADEAQQAFLSKLLLTLGIFTLGVLIQL 308
            F+CN+CL    DP+VTLCGHL+CWPCLY+WL   S +  CPVCKA V ++ ++PLYGRG     DPR+K   G         ++P RPA +RPE  P    + F      F+GG P    GAA               R    +FSAG G FPSLFG Q   F        A     GF+    G          T ++ QQA LSK LL +GIF +  LI L
Sbjct:   42 FECNICLELAQDPIVTLCGHLFCWPCLYKWLHGHSKSQECPVCKALVEEDKIVPLYGRGKVGAPDPRSKAIPG--------INIPHRPAGRRPETAPSPGPNLFQQQPFGFMGGGP-APMGAA---------------RFGNFTFSAGFGLFPSLFGFQMHGFPDGVGYGAAPGYNYGFSNPFQGGHPHTFHQPMTREQEQQAMLSKYLLIIGIFVVVCLIFL 240          
BLAST of EWM24656.1 vs. NCBI_GenBank
Match: gi|1173109887|ref|XP_020530333.1| (E3 ubiquitin-protein ligase RNF185 isoform X1 [Amborella trichopoda])

HSP 1 Score: 145.591 bits (366), Expect = 6.267e-38
Identity = 82/221 (37.10%), Postives = 111/221 (50.23%), Query Frame = 0
Query:  101 FDCNVCLSEVGDPVVTLCGHLYCWPCLYRWLSTNHT----CPVCKAGVTKENVIPLYGRGSEQVDPRTKTRRGGAIGREEATDVPGRPAAQRPEARPEADS--FIGGASAFVGGIPFNSFGAAHHYTGGTIGGLGPPGRNSAVSFSAGLGFFPSLFGLQFQTFTPSSSSSVAATQGVGFNGS-------------GNGSTADEAQQAFLSKLLLTLGIFTL 302
            F+CN+C     DP+VTLCGHL+CWPCLY+WL  NH+    CPVCKA + +E ++PLYGRG  Q DPR+++  G        T++P RPA QRPE  P  D          F+GG P  +                   R    +FSAG G FP+LFG Q   F  +++   A     GF+                +  T  + Q+A LSK LL +G+F +
Sbjct:   63 FECNICFELAQDPIVTLCGHLFCWPCLYKWLH-NHSQCQDCPVCKALIQEEKLVPLYGRGKNQTDPRSRSILG--------TNIPNRPAGQRPETAPPPDPNHMAHQTFGFMGGAPMAA------------------SRFGHFTFSAGFGLFPALFGFQMHGFPDATAYGAAPGFPYGFSNPFHGGHVHGHAHGFPHPPTQAQQQEAMLSKYLLVIGLFVI 256          
BLAST of EWM24656.1 vs. NCBI_GenBank
Match: gi|567965567|gb|ETK91037.1| (hypothetical protein L915_05313 [Phytophthora parasitica] >gi|567994278|gb|ETL44438.1| hypothetical protein L916_05269 [Phytophthora parasitica] >gi|568053962|gb|ETM50769.1| hypothetical protein L914_05268 [Phytophthora parasitica] >gi|570955838|gb|ETP20919.1| hypothetical protein F441_05463 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 143.28 bits (360), Expect = 6.866e-38
Identity = 83/210 (39.52%), Postives = 109/210 (51.90%), Query Frame = 0
Query:  101 FDCNVCLSEVGDPVVTLCGHLYCWPCLYRWLSTNHTCPVCKAGVTKENVIPLYGRGSEQVDPRTKTRRGGAIGREEATDVPGRPAAQRPEARPEADSFIGGASAFVGGIPFNSFGAAHHYTGGTIGGLGPPGRNSAVSFSAGLGFFPSLFGLQFQTFTPSSSSSVAATQGVGFNGSGNGSTADEA----QQAFLSKLLLTLGIFTLGVLI 306
            F+CN+CL  V  PVVTLCGHLYCWPCLY+W+  +  CPVCKAGV+++NVIP+Y RG++  DPRT+        +   + +P RP  QRP+A                            Y  G   G G   + +A S S  +GFFP+LFG+ +Q          AAT     +  G   TA EA    QQAFLS+ LL +G   +  LI
Sbjct:   22 FECNICLDTVSSPVVTLCGHLYCWPCLYQWMQNHSECPVCKAGVSEQNVIPVYARGADATDPRTQ--------QVSDSGIPHRPRGQRPDAE--------------------QLRRRRPYNFGIFNGNG---QGNAFSMSPTIGFFPALFGVPYQ-------PPAAATH----HQDGTPLTAQEARQQMQQAFLSRFLLIVGSLVILCLI 189          
BLAST of EWM24656.1 vs. NCBI_GenBank
Match: gi|675188021|ref|XP_008902895.1| (hypothetical protein PPTG_09629 [Phytophthora parasitica INRA-310] >gi|566028226|gb|ETI51137.1| hypothetical protein F443_05457 [Phytophthora parasitica P1569] >gi|568023555|gb|ETL97610.1| hypothetical protein L917_05151 [Phytophthora parasitica] >gi|568097229|gb|ETN11973.1| hypothetical protein PPTG_09629 [Phytophthora parasitica INRA-310] >gi|570331946|gb|ETO79894.1| hypothetical protein F444_05501 [Phytophthora parasitica P1976] >gi|570990992|gb|ETP48852.1| hypothetical protein F442_05505 [Phytophthora parasitica P10297])

HSP 1 Score: 141.739 bits (356), Expect = 2.651e-37
Identity = 81/210 (38.57%), Postives = 110/210 (52.38%), Query Frame = 0
Query:  101 FDCNVCLSEVGDPVVTLCGHLYCWPCLYRWLSTNHTCPVCKAGVTKENVIPLYGRGSEQVDPRTKTRRGGAIGREEATDVPGRPAAQRPEARPEADSFIGGASAFVGGIPFNSFGAAHHYTGGTIGGLGPPGRNSAVSFSAGLGFFPSLFGLQFQTFTPSSSSSVAATQGVGFNGSGNGSTADEA----QQAFLSKLLLTLGIFTLGVLI 306
            F+CN+CL  V  PVVTLCGHLYCWPCLY+W+  +  CPVCKAGV+++NVIP+Y RG++  DPRT+        +   + +P RP  QRP+A                            Y  G   G G   + +A S S  +GFFP+LFG+ +Q   P+++           +  G   TA EA    QQAFLS+ LL +G   +  LI
Sbjct:   22 FECNICLDTVSSPVVTLCGHLYCWPCLYQWMQNHSECPVCKAGVSEQNVIPVYARGADATDPRTQ--------QVSDSGIPHRPRGQRPDAE--------------------QLRRRRPYNFGIFNGNG---QGNAFSMSPTIGFFPALFGVPYQ--PPAAAMH---------HQDGTPLTAQEARQQMQQAFLSRFLLIVGSLVILCLI 189          
BLAST of EWM24656.1 vs. NCBI_GenBank
Match: gi|1009145216|ref|XP_015890211.1| (PREDICTED: E3 ubiquitin-protein ligase RNF185-like isoform X3 [Ziziphus jujuba])

HSP 1 Score: 140.969 bits (354), Expect = 1.764e-36
Identity = 85/227 (37.44%), Postives = 112/227 (49.34%), Query Frame = 0
Query:   93 SSSQTDSRFDCNVCLSEVGDPVVTLCGHLYCWPCLYRWL---STNHTCPVCKAGVTKENVIPLYGRGSEQVDPRTKTRRGGAIGREEATDVPGRPAAQRPEA--RPEADSFIGGASAFVGGIPFNSFGAAHHYTGGTIGGLGPPGRNSAVSFSAGLGFFPSLFGLQFQTFTPSSSSSVAATQGVGFN------GSGNGSTADEAQQA--FLSKLLLTLGIFTLGVLI 306
            +S+     F+CN+C     DP+VTLCGHL+CWPCLYRWL   S +  CPVCKA V +E ++PLYGRG  Q DPR+KT +G         +VP RPA QRPE   +PEA+        F+GG    +     ++T  T  G                G  PSL  +QF  F  ++     +    GFN        G    A+   QA   L  LLL +G+F +  LI
Sbjct:   21 NSANDAGDFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAIVQEEKLVPLYGRGKTQADPRSKTYQG--------INVPNRPAGQRPETAPQPEANQLPNYGFGFMGGFVPMATARIGNFTFATAFG----------------GLLPSLLNIQFHGFPDATVYGTTSGFPYGFNSFHSGHAHGFAHPANRGHQADNVLKNLLLLIGVFVILALI 223          
The following BLAST results are available for this feature:
BLAST of EWM24656.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106178|gb|EWM24656.1|0.000e+0100.00ring finger protein [Nannochloropsis gaditana][more]
gi|971504956|dbj|GAQ93251.1|4.937e-4340.22E3 ubiquitin-protein ligase RNF5 [Klebsormidium ni... [more]
gi|702467865|ref|XP_010029839.1|1.915e-3935.77PREDICTED: E3 ubiquitin-protein ligase RNF185 [Euc... [more]
gi|298710098|emb|CBJ31812.1|2.611e-3954.66conserved unknown protein [Ectocarpus siliculosus][more]
gi|586769076|ref|XP_006856127.1|1.524e-3836.94E3 ubiquitin-protein ligase RNF185 isoform X2 [Amb... [more]
gi|116781137|gb|ABK21979.1|3.751e-3840.36unknown [Picea sitchensis] >gi|148908424|gb|ABR173... [more]
gi|1173109887|ref|XP_020530333.1|6.267e-3837.10E3 ubiquitin-protein ligase RNF185 isoform X1 [Amb... [more]
gi|567965567|gb|ETK91037.1|6.866e-3839.52hypothetical protein L915_05313 [Phytophthora para... [more]
gi|675188021|ref|XP_008902895.1|2.651e-3738.57hypothetical protein PPTG_09629 [Phytophthora para... [more]
gi|1009145216|ref|XP_015890211.1|1.764e-3637.44PREDICTED: E3 ubiquitin-protein ligase RNF185-like... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6040rna6040Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications