EWM24656.1, cds6025 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24656.1 vs. NCBI_GenBank
Match: gi|585106178|gb|EWM24656.1| (ring finger protein [Nannochloropsis gaditana]) HSP 1 Score: 724.161 bits (1868), Expect = 0.000e+0 Identity = 350/350 (100.00%), Postives = 350/350 (100.00%), Query Frame = 0 Query: 1 MGRVAEGCGNGAVEFHCVRNKRRHIITHDQMAVNSLPEQVVVSSMPDISCRRDKVKRLASPTMRNMHEPRTTGRAAGGSRGATPTNLHGNMNSSSQTDSRFDCNVCLSEVGDPVVTLCGHLYCWPCLYRWLSTNHTCPVCKAGVTKENVIPLYGRGSEQVDPRTKTRRGGAIGREEATDVPGRPAAQRPEARPEADSFIGGASAFVGGIPFNSFGAAHHYTGGTIGGLGPPGRNSAVSFSAGLGFFPSLFGLQFQTFTPSSSSSVAATQGVGFNGSGNGSTADEAQQAFLSKLLLTLGIFTLGVLIQLTRKKKEGKISDGSDRHVRRQEDAKMIEHRKENCQGTIQFIHL 350 MGRVAEGCGNGAVEFHCVRNKRRHIITHDQMAVNSLPEQVVVSSMPDISCRRDKVKRLASPTMRNMHEPRTTGRAAGGSRGATPTNLHGNMNSSSQTDSRFDCNVCLSEVGDPVVTLCGHLYCWPCLYRWLSTNHTCPVCKAGVTKENVIPLYGRGSEQVDPRTKTRRGGAIGREEATDVPGRPAAQRPEARPEADSFIGGASAFVGGIPFNSFGAAHHYTGGTIGGLGPPGRNSAVSFSAGLGFFPSLFGLQFQTFTPSSSSSVAATQGVGFNGSGNGSTADEAQQAFLSKLLLTLGIFTLGVLIQLTRKKKEGKISDGSDRHVRRQEDAKMIEHRKENCQGTIQFIHL Sbjct: 1 MGRVAEGCGNGAVEFHCVRNKRRHIITHDQMAVNSLPEQVVVSSMPDISCRRDKVKRLASPTMRNMHEPRTTGRAAGGSRGATPTNLHGNMNSSSQTDSRFDCNVCLSEVGDPVVTLCGHLYCWPCLYRWLSTNHTCPVCKAGVTKENVIPLYGRGSEQVDPRTKTRRGGAIGREEATDVPGRPAAQRPEARPEADSFIGGASAFVGGIPFNSFGAAHHYTGGTIGGLGPPGRNSAVSFSAGLGFFPSLFGLQFQTFTPSSSSSVAATQGVGFNGSGNGSTADEAQQAFLSKLLLTLGIFTLGVLIQLTRKKKEGKISDGSDRHVRRQEDAKMIEHRKENCQGTIQFIHL 350
BLAST of EWM24656.1 vs. NCBI_GenBank
Match: gi|971504956|dbj|GAQ93251.1| (E3 ubiquitin-protein ligase RNF5 [Klebsormidium nitens]) HSP 1 Score: 158.688 bits (400), Expect = 4.937e-43 Identity = 111/276 (40.22%), Postives = 139/276 (50.36%), Query Frame = 0 Query: 42 VSSMPDISCRRD---KVKRLASPTMRNMHEPRTTGRAAGGSRGATPTNLHGNMNSSSQTDSRFDCNVCLSEVGDPVVTLCGHLYCWPCLYRWL---STNHTCPVCKAGVTKENVIPLYGRGSEQVDPRTKTRRGGAIGREEATDVPGRPAAQRPEAR--PEADSFIGGASAFVGGIPFNSFGAAHHYTGGTIGGLGPPGRNSAVSFSAGLGFFPSLFGLQFQTFT--PSSSSSVAATQGVGFNGSGNGS-TADEAQQAFLSKLLLTLGIFTLGVLI 306 VSS D S RR K AS +P T+G AG +G S++ F+CN+CL DPVVTLCGHL+CWPCLYRWL S CPVCKAGV+++NVIPLYGRG+ DPRTK G ++P RPA QRPE++ P+ F F+ G P FG + SAG G FPSL GLQ+Q +T P + A G G + T ++ QQAFLS+LL+ LG F L L+ Sbjct: 12 VSSEGDQSGRRQTDAKTGEQASMERETAAQPSTSG-GAGFEQG----EWSERTASANGEGGSFECNICLELAQDPVVTLCGHLFCWPCLYRWLRLHSQCKECPVCKAGVSEKNVIPLYGRGTSGEDPRTKPVSG--------PEIPRRPAGQRPESQRAPQMGPF-----GFMAG-PSAQFG--------------------NFTLSAGFGLFPSLLGLQWQAYTGDPMPAGFAAPDDGTGVAPVPRAALTPEQQQQAFLSRLLVMLGSFVLLCLL 248
BLAST of EWM24656.1 vs. NCBI_GenBank
Match: gi|702467865|ref|XP_010029839.1| (PREDICTED: E3 ubiquitin-protein ligase RNF185 [Eucalyptus grandis]) HSP 1 Score: 148.673 bits (374), Expect = 1.915e-39 Identity = 88/246 (35.77%), Postives = 121/246 (49.19%), Query Frame = 0 Query: 74 RAAGGSRGATPTNLHGNMNSSSQTDSRFDCNVCLSEVGDPVVTLCGHLYCWPCLYRWLSTN---HTCPVCKAGVTKENVIPLYGRGSEQVDPRTKTRRGGAIGREEATDVPGRPAAQRPEAR--PEADSFIGGASAFVGGIPFNSFGAAHHYTGGTIGGLGPPGRNSAVSFSAGLGFFPSLFGLQFQTFTPSSSSSVAATQGVGFN------GSGNGSTADEAQQA--FLSKLLLTLGIFTLGVLI 306 + G + P + ++ S F+CN+CL DPV+TLCGHLYCWPCLYRWL+ + H CPVCKA + +E ++PLYGRG Q DPR+K+ G D+P RP+ QRPE P+A+ F F+GG ++ ++T T G G P+LF +QF F ++ + GFN G TA QQA L LLL +GIF + L+ Sbjct: 2 ESGAGEWASKPAQSAASSDNGSNDAGDFECNICLELAQDPVLTLCGHLYCWPCLYRWLTHHSHCHECPVCKALIQEEKLVPLYGRGKTQTDPRSKSYPG--------IDIPNRPSGQRPETAPPPDANQFANYGFGFMGGFMPMAYARFGNFTLSTAFG----------------GLIPALFNVQFHGFQDATVYGTTSGYPYGFNTFHGGHAHGFPQTAVRGQQADTVLKNLLLLIGIFVVLALL 223
BLAST of EWM24656.1 vs. NCBI_GenBank
Match: gi|298710098|emb|CBJ31812.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 145.976 bits (367), Expect = 2.611e-39 Identity = 88/161 (54.66%), Postives = 101/161 (62.73%), Query Frame = 0 Query: 96 QTDSRFDCNVCLSEVGDPVVTLCGHLYCWPCLYRWLSTNHT-CPVCKAGVTKENVIPLYGRGSEQVDPRTK-TRRGGAIGREEATDVPGRPAAQRPEARPEADSFIGGASAFVGGIPFNSFGAAHHYTGGTIGGLGPPGRNSAVSFSAGLGFFPSLFGLQF 254 + DS F+CN+CL V +PVVT CGHL+CWPCLYRWL+TN T CPVCKAGVT NVIPLYGRG+E VDPRTK T R G VP RP A+RP+A + + A+AF GG G A +G V F AGLGFFPSLFGLQF Sbjct: 10 EEDSYFECNICLDGVREPVVTRCGHLFCWPCLYRWLNTNQTECPVCKAGVTASNVIPLYGRGAESVDPRTKPTERDG---------VPSRPEAERPQA-----ARLRHANAFTGGFDVGGGGGAGPTGEDGVGNGA--VAGGHVHFQAGLGFFPSLFGLQF 154
BLAST of EWM24656.1 vs. NCBI_GenBank
Match: gi|586769076|ref|XP_006856127.1| (E3 ubiquitin-protein ligase RNF185 isoform X2 [Amborella trichopoda] >gi|769797801|ref|XP_011627711.1| E3 ubiquitin-protein ligase RNF185 isoform X2 [Amborella trichopoda] >gi|548859986|gb|ERN17594.1| hypothetical protein AMTR_s00059p00153580 [Amborella trichopoda]) HSP 1 Score: 146.362 bits (368), Expect = 1.524e-38 Identity = 82/222 (36.94%), Postives = 111/222 (50.00%), Query Frame = 0 Query: 100 RFDCNVCLSEVGDPVVTLCGHLYCWPCLYRWLSTNHT----CPVCKAGVTKENVIPLYGRGSEQVDPRTKTRRGGAIGREEATDVPGRPAAQRPEARPEADS--FIGGASAFVGGIPFNSFGAAHHYTGGTIGGLGPPGRNSAVSFSAGLGFFPSLFGLQFQTFTPSSSSSVAATQGVGFNGS-------------GNGSTADEAQQAFLSKLLLTLGIFTL 302 F+CN+C DP+VTLCGHL+CWPCLY+WL NH+ CPVCKA + +E ++PLYGRG Q DPR+++ G T++P RPA QRPE P D F+GG P + R +FSAG G FP+LFG Q F +++ A GF+ + T + Q+A LSK LL +G+F + Sbjct: 35 NFECNICFELAQDPIVTLCGHLFCWPCLYKWLH-NHSQCQDCPVCKALIQEEKLVPLYGRGKNQTDPRSRSILG--------TNIPNRPAGQRPETAPPPDPNHMAHQTFGFMGGAPMAA------------------SRFGHFTFSAGFGLFPALFGFQMHGFPDATAYGAAPGFPYGFSNPFHGGHVHGHAHGFPHPPTQAQQQEAMLSKYLLVIGLFVI 229
BLAST of EWM24656.1 vs. NCBI_GenBank
Match: gi|116781137|gb|ABK21979.1| (unknown [Picea sitchensis] >gi|148908424|gb|ABR17325.1| unknown [Picea sitchensis]) HSP 1 Score: 145.591 bits (366), Expect = 3.751e-38 Identity = 90/223 (40.36%), Postives = 112/223 (50.22%), Query Frame = 0 Query: 101 FDCNVCLSEVGDPVVTLCGHLYCWPCLYRWL---STNHTCPVCKAGVTKENVIPLYGRGSEQV-DPRTKTRRGGAIGREEATDVPGRPAAQRPEARPE--ADSFIGGASAFVGGIPFNSFGAAHHYTGGTIGGLGPPGRNSAVSFSAGLGFFPSLFGLQFQTFTPSSSSSVAATQGVGFNGSGNGS---------TADEAQQAFLSKLLLTLGIFTLGVLIQL 308 F+CN+CL DP+VTLCGHL+CWPCLY+WL S + CPVCKA V ++ ++PLYGRG DPR+K G ++P RPA +RPE P + F F+GG P GAA R +FSAG G FPSLFG Q F A GF+ G T ++ QQA LSK LL +GIF + LI L Sbjct: 42 FECNICLELAQDPIVTLCGHLFCWPCLYKWLHGHSKSQECPVCKALVEEDKIVPLYGRGKVGAPDPRSKAIPG--------INIPHRPAGRRPETAPSPGPNLFQQQPFGFMGGGP-APMGAA---------------RFGNFTFSAGFGLFPSLFGFQMHGFPDGVGYGAAPGYNYGFSNPFQGGHPHTFHQPMTREQEQQAMLSKYLLIIGIFVVVCLIFL 240
BLAST of EWM24656.1 vs. NCBI_GenBank
Match: gi|1173109887|ref|XP_020530333.1| (E3 ubiquitin-protein ligase RNF185 isoform X1 [Amborella trichopoda]) HSP 1 Score: 145.591 bits (366), Expect = 6.267e-38 Identity = 82/221 (37.10%), Postives = 111/221 (50.23%), Query Frame = 0 Query: 101 FDCNVCLSEVGDPVVTLCGHLYCWPCLYRWLSTNHT----CPVCKAGVTKENVIPLYGRGSEQVDPRTKTRRGGAIGREEATDVPGRPAAQRPEARPEADS--FIGGASAFVGGIPFNSFGAAHHYTGGTIGGLGPPGRNSAVSFSAGLGFFPSLFGLQFQTFTPSSSSSVAATQGVGFNGS-------------GNGSTADEAQQAFLSKLLLTLGIFTL 302 F+CN+C DP+VTLCGHL+CWPCLY+WL NH+ CPVCKA + +E ++PLYGRG Q DPR+++ G T++P RPA QRPE P D F+GG P + R +FSAG G FP+LFG Q F +++ A GF+ + T + Q+A LSK LL +G+F + Sbjct: 63 FECNICFELAQDPIVTLCGHLFCWPCLYKWLH-NHSQCQDCPVCKALIQEEKLVPLYGRGKNQTDPRSRSILG--------TNIPNRPAGQRPETAPPPDPNHMAHQTFGFMGGAPMAA------------------SRFGHFTFSAGFGLFPALFGFQMHGFPDATAYGAAPGFPYGFSNPFHGGHVHGHAHGFPHPPTQAQQQEAMLSKYLLVIGLFVI 256
BLAST of EWM24656.1 vs. NCBI_GenBank
Match: gi|567965567|gb|ETK91037.1| (hypothetical protein L915_05313 [Phytophthora parasitica] >gi|567994278|gb|ETL44438.1| hypothetical protein L916_05269 [Phytophthora parasitica] >gi|568053962|gb|ETM50769.1| hypothetical protein L914_05268 [Phytophthora parasitica] >gi|570955838|gb|ETP20919.1| hypothetical protein F441_05463 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 143.28 bits (360), Expect = 6.866e-38 Identity = 83/210 (39.52%), Postives = 109/210 (51.90%), Query Frame = 0 Query: 101 FDCNVCLSEVGDPVVTLCGHLYCWPCLYRWLSTNHTCPVCKAGVTKENVIPLYGRGSEQVDPRTKTRRGGAIGREEATDVPGRPAAQRPEARPEADSFIGGASAFVGGIPFNSFGAAHHYTGGTIGGLGPPGRNSAVSFSAGLGFFPSLFGLQFQTFTPSSSSSVAATQGVGFNGSGNGSTADEA----QQAFLSKLLLTLGIFTLGVLI 306 F+CN+CL V PVVTLCGHLYCWPCLY+W+ + CPVCKAGV+++NVIP+Y RG++ DPRT+ + + +P RP QRP+A Y G G G + +A S S +GFFP+LFG+ +Q AAT + G TA EA QQAFLS+ LL +G + LI Sbjct: 22 FECNICLDTVSSPVVTLCGHLYCWPCLYQWMQNHSECPVCKAGVSEQNVIPVYARGADATDPRTQ--------QVSDSGIPHRPRGQRPDAE--------------------QLRRRRPYNFGIFNGNG---QGNAFSMSPTIGFFPALFGVPYQ-------PPAAATH----HQDGTPLTAQEARQQMQQAFLSRFLLIVGSLVILCLI 189
BLAST of EWM24656.1 vs. NCBI_GenBank
Match: gi|675188021|ref|XP_008902895.1| (hypothetical protein PPTG_09629 [Phytophthora parasitica INRA-310] >gi|566028226|gb|ETI51137.1| hypothetical protein F443_05457 [Phytophthora parasitica P1569] >gi|568023555|gb|ETL97610.1| hypothetical protein L917_05151 [Phytophthora parasitica] >gi|568097229|gb|ETN11973.1| hypothetical protein PPTG_09629 [Phytophthora parasitica INRA-310] >gi|570331946|gb|ETO79894.1| hypothetical protein F444_05501 [Phytophthora parasitica P1976] >gi|570990992|gb|ETP48852.1| hypothetical protein F442_05505 [Phytophthora parasitica P10297]) HSP 1 Score: 141.739 bits (356), Expect = 2.651e-37 Identity = 81/210 (38.57%), Postives = 110/210 (52.38%), Query Frame = 0 Query: 101 FDCNVCLSEVGDPVVTLCGHLYCWPCLYRWLSTNHTCPVCKAGVTKENVIPLYGRGSEQVDPRTKTRRGGAIGREEATDVPGRPAAQRPEARPEADSFIGGASAFVGGIPFNSFGAAHHYTGGTIGGLGPPGRNSAVSFSAGLGFFPSLFGLQFQTFTPSSSSSVAATQGVGFNGSGNGSTADEA----QQAFLSKLLLTLGIFTLGVLI 306 F+CN+CL V PVVTLCGHLYCWPCLY+W+ + CPVCKAGV+++NVIP+Y RG++ DPRT+ + + +P RP QRP+A Y G G G + +A S S +GFFP+LFG+ +Q P+++ + G TA EA QQAFLS+ LL +G + LI Sbjct: 22 FECNICLDTVSSPVVTLCGHLYCWPCLYQWMQNHSECPVCKAGVSEQNVIPVYARGADATDPRTQ--------QVSDSGIPHRPRGQRPDAE--------------------QLRRRRPYNFGIFNGNG---QGNAFSMSPTIGFFPALFGVPYQ--PPAAAMH---------HQDGTPLTAQEARQQMQQAFLSRFLLIVGSLVILCLI 189
BLAST of EWM24656.1 vs. NCBI_GenBank
Match: gi|1009145216|ref|XP_015890211.1| (PREDICTED: E3 ubiquitin-protein ligase RNF185-like isoform X3 [Ziziphus jujuba]) HSP 1 Score: 140.969 bits (354), Expect = 1.764e-36 Identity = 85/227 (37.44%), Postives = 112/227 (49.34%), Query Frame = 0 Query: 93 SSSQTDSRFDCNVCLSEVGDPVVTLCGHLYCWPCLYRWL---STNHTCPVCKAGVTKENVIPLYGRGSEQVDPRTKTRRGGAIGREEATDVPGRPAAQRPEA--RPEADSFIGGASAFVGGIPFNSFGAAHHYTGGTIGGLGPPGRNSAVSFSAGLGFFPSLFGLQFQTFTPSSSSSVAATQGVGFN------GSGNGSTADEAQQA--FLSKLLLTLGIFTLGVLI 306 +S+ F+CN+C DP+VTLCGHL+CWPCLYRWL S + CPVCKA V +E ++PLYGRG Q DPR+KT +G +VP RPA QRPE +PEA+ F+GG + ++T T G G PSL +QF F ++ + GFN G A+ QA L LLL +G+F + LI Sbjct: 21 NSANDAGDFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAIVQEEKLVPLYGRGKTQADPRSKTYQG--------INVPNRPAGQRPETAPQPEANQLPNYGFGFMGGFVPMATARIGNFTFATAFG----------------GLLPSLLNIQFHGFPDATVYGTTSGFPYGFNSFHSGHAHGFAHPANRGHQADNVLKNLLLLIGVFVILALI 223 The following BLAST results are available for this feature:
BLAST of EWM24656.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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