rna6036, rna6036 (mRNA) Nannochloropsis gaditana

Overview
Namerna6036
Unique Namerna6036
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length867
Alignment locationCM002467.1:423913..424395 -

Link to JBrowse

Properties
Property NameValue
Productsnare component
Orig transcript idgnl|cribi|Naga_100055g18.7330.mrna
Orig protein idgnl|cribi|Naga_100055g18.7330
GeneSNR8
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:423913..424395 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SNR8gene5831Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24646.1cds6021Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6036rna6036-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6036 ID=rna6036|Name=rna6036|organism=Nannochloropsis gaditana|type=mRNA|length=867bp
ATGATAGTCGCACAAGTGCTATCCGAGCAGCATCCTATGTCGCAGTGCTA
TGGTCGAGCTAGCTATTGGGATAGCCGTTACACCACGGATCCAGAGCCAT
TTGATTGGTATCAGCGGTACAGCGGTCTGAAGGGTCTATTAAAGCAACAT
ATTCGCAAGAGTGATTCTATTTTGATGGCCGGATGCGGCAATTCCTCAAT
GAGTGAGGACATGTACGAGGATGGCTTCACACACATCACGAATATCGACA
TTTCACGTGTAGTTGTGAACCAGATGCGGGAATCGCACCGAGGAAAGACC
AGTATGGTTTGGCAGCACATGAATGCGTGTGCCTTGAACCTCCCCGACGC
CTCCTTTAATGTGGTTCTTGATAAGGGCACGCTAGATTCTATTCTGTGTG
GAAATGGATCTCTGAATAATGGAGCCATGATGTGCATGGAAGTGTCTCGA
GTGCTGAAGGCTGACGGCATCTTCATTGTTATTTCTTATGGCATTCCCGA
AAATCGCCTGCAGTATCTGCAAGAAGAGGCTTACTCGTGGCGAGTCAGTG
TACACACAGTGCCAAAAGCTCAACTCGATGGCCTCCCTTCTTCCTCTAAC
CCGGCCGATGGGGATCTTGCCGATGGAAGTTATGGTGGAAGTGTGCACTA
CGTCTACATTTACGATGAGATCGCGGCATGTTACATCTGCCGAAGGGCAG
TGACGAGACATACCACCCCTTTCGCGTACCTCGGAAGCTTCACGTGGAGA
GCTTTCGTGGAAAAAACAAAGGCACAGCTTCACAATCGCATCACTAGTCC
AGTCATGCAACAGCATAGCCAATGTTACAAGGAAAAAAGTAATGATGACG
CGCTTGGTCTTATTTGA
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protein sequence of rna6036

>rna6036-protein ID=rna6036-protein|Name=rna6036|organism=Nannochloropsis gaditana|type=polypeptide|length=160bp
MGQMLAHGARPSSSAVLQRYREILDYYANDFQKSQTVLQRKRETAELLST
RAGGKPNTGTKNGADWGNPQMDQLLRERNAIHSSLRGVDSILSQAMETKD
GLRAQRHSLTGANSGLAGLANNLPSISRVVDAIQRIKTRDNIIIGLLTAC
CLCFTIWYLV
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mRNA from alignment at CM002467.1:423913..424395-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6036 ID=rna6036|Name=rna6036|organism=Nannochloropsis gaditana|type=mRNA|length=483bp|location=Sequence derived from alignment at CM002467.1:423913..424395- (Nannochloropsis gaditana)
ATGGGCCAAATGCTCGCTCACGGAGCGCGACCCTCCAGCTCGGCCGTGCT
GCAGAGATATCGAGAAATCTTGGATTATTACGCCAATGACTTTCAAAAAA
GTCAGACCGTGCTTCAGCGAAAGCGGGAAACAGCAGAACTGCTTAGTACA
AGAGCAGGAGGAAAGCCGAATACTGGAACGAAGAATGGTGCTGACTGGGG
CAATCCTCAAATGGATCAGTTGTTGCGGGAGAGAAACGCGATTCATAGTT
CACTTCGCGGCGTCGACAGCATACTGAGTCAAGCAATGGAAACGAAAGAC
GGCCTTCGGGCACAGAGGCATTCATTGACAGGGGCGAACAGCGGTCTTGC
GGGTCTGGCTAATAATTTACCGTCTATAAGCCGCGTGGTGGATGCCATCC
AACGAATAAAGACGAGAGACAACATCATCATCGGCCTTCTTACTGCCTGC
TGTCTCTGCTTTACTATTTGGTATCTTGTATGA
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Coding sequence (CDS) from alignment at CM002467.1:423913..424395-

>rna6036 ID=rna6036|Name=rna6036|organism=Nannochloropsis gaditana|type=CDS|length=483bp|location=Sequence derived from alignment at CM002467.1:423913..424395- (Nannochloropsis gaditana)
ATGGGCCAAATGCTCGCTCACGGAGCGCGACCCTCCAGCTCGGCCGTGCT
GCAGAGATATCGAGAAATCTTGGATTATTACGCCAATGACTTTCAAAAAA
GTCAGACCGTGCTTCAGCGAAAGCGGGAAACAGCAGAACTGCTTAGTACA
AGAGCAGGAGGAAAGCCGAATACTGGAACGAAGAATGGTGCTGACTGGGG
CAATCCTCAAATGGATCAGTTGTTGCGGGAGAGAAACGCGATTCATAGTT
CACTTCGCGGCGTCGACAGCATACTGAGTCAAGCAATGGAAACGAAAGAC
GGCCTTCGGGCACAGAGGCATTCATTGACAGGGGCGAACAGCGGTCTTGC
GGGTCTGGCTAATAATTTACCGTCTATAAGCCGCGTGGTGGATGCCATCC
AACGAATAAAGACGAGAGACAACATCATCATCGGCCTTCTTACTGCCTGC
TGTCTCTGCTTTACTATTTGGTATCTTGTATGA
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Synonyms
Publications