EWM24646.1, cds6021 (CDS) Nannochloropsis gaditana

Overview
NameEWM24646.1
Unique Namecds6021
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:423913..424395 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24646.1
Productsnare component
Orig transcript idgnl|cribi|Naga_100055g18.7330.mrna
GeneSNR8
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:423913..424395 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0006888ER to Golgi vesicle-mediated transport
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: Cellular Component
TermDefinition
GO:0005794Golgi apparatus
GO:0016020membrane
GO:0005801cis-Golgi network
GO:0000139Golgi membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR023601Golgi_SNAP_su1
Homology
BLAST of EWM24646.1 vs. NCBI_GenBank
Match: gi|585106168|gb|EWM24646.1| (snare component [Nannochloropsis gaditana])

HSP 1 Score: 331.257 bits (848), Expect = 6.001e-115
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0
Query:    1 MGQMLAHGARPSSSAVLQRYREILDYYANDFQKSQTVLQRKRETAELLSTRAGGKPNTGTKNGADWGNPQMDQLLRERNAIHSSLRGVDSILSQAMETKDGLRAQRHSLTGANSGLAGLANNLPSISRVVDAIQRIKTRDNIIIGLLTACCLCFTIWYLV 160
            MGQMLAHGARPSSSAVLQRYREILDYYANDFQKSQTVLQRKRETAELLSTRAGGKPNTGTKNGADWGNPQMDQLLRERNAIHSSLRGVDSILSQAMETKDGLRAQRHSLTGANSGLAGLANNLPSISRVVDAIQRIKTRDNIIIGLLTACCLCFTIWYLV
Sbjct:    1 MGQMLAHGARPSSSAVLQRYREILDYYANDFQKSQTVLQRKRETAELLSTRAGGKPNTGTKNGADWGNPQMDQLLRERNAIHSSLRGVDSILSQAMETKDGLRAQRHSLTGANSGLAGLANNLPSISRVVDAIQRIKTRDNIIIGLLTACCLCFTIWYLV 160          
BLAST of EWM24646.1 vs. NCBI_GenBank
Match: gi|298714583|emb|CBJ27574.1| (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) [Ectocarpus siliculosus])

HSP 1 Score: 136.346 bits (342), Expect = 3.649e-37
Identity = 72/159 (45.28%), Postives = 103/159 (64.78%), Query Frame = 0
Query:    1 MGQMLAHGARPSSSAVLQRYREILDYYANDFQKSQTVLQRKRETAELL-STRAGGKPNTGTKNGADWGNPQMDQLLRERNAIHSSLRGVDSILSQAMETKDGLRAQRHSLTGANSGLAGLANNLPSISRVVDAIQRIKTRDNIIIGLLTACCLCFTIWY 158
            MG  +A GAR + SA+LQRYREIL  ++ +F+K+   LQRKR+T EL  S+RA      GT +       + + LLRE+NAIH+SL+    +L QA E ++ LR QR +L  A+S L+ + N  P+I+RVV+AIQ+ K +D +II  + A C+ FT WY
Sbjct:   67 MGAKVAKGARKADSAMLQRYREILFDFSTEFKKTSAALQRKRDTTELFKSSRADRGGGDGTGDF------EQEHLLREQNAIHNSLQSATGVLGQAAEARESLRHQRATLGAASSTLSSMQNRFPAINRVVEAIQKKKAKDRLIIAAVMAACIFFTFWY 219          
BLAST of EWM24646.1 vs. NCBI_GenBank
Match: gi|224006764|ref|XP_002292342.1| (SNARE component [Thalassiosira pseudonana CCMP1335] >gi|220971984|gb|EED90317.1| SNARE component [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 111.694 bits (278), Expect = 4.432e-27
Identity = 59/152 (38.82%), Postives = 92/152 (60.53%), Query Frame = 0
Query:    9 ARPSSSAVLQRYREILDYYANDFQKSQTVLQRKRETAELLSTRAGGKPNTGTKNGADWGNPQMDQLLRERNAIHSSLRGVDSILSQAMETKDGLRAQRHSLTGANSGLAGLANNLPSISRVVDAIQRIKTRDNIIIGLLTACCLCFTIWYLV 160
             R   S +++RYREIL     DF+K+   + R+RE  EL     G   N G +NG D   P M+QLLRERNAI +S++   S+L+QA   +  LR+Q  SL G    +A +A N+P ++ +++ I++ + RD+ ++G + A C+ FT+WYL 
Sbjct:  138 GRSQHSLLVKRYREILFDCGADFKKTSAGVARRREAMELFR---GSNDNKG-ENGTD---PAMEQLLRERNAIDNSMKSASSVLNQASSVRSELRSQGASLRGVGGTMASIAGNIPGVNNLIERIRQKRMRDDKVVGGVVAGCILFTLWYLF 282          
BLAST of EWM24646.1 vs. NCBI_GenBank
Match: gi|224015881|ref|XP_002297585.1| (SNARE component [Thalassiosira pseudonana CCMP1335] >gi|220967724|gb|EED86107.1| SNARE component [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 111.694 bits (278), Expect = 5.773e-27
Identity = 59/151 (39.07%), Postives = 92/151 (60.93%), Query Frame = 0
Query:   10 RPSSSAVLQRYREILDYYANDFQKSQTVLQRKRETAELLSTRAGGKPNTGTKNGADWGNPQMDQLLRERNAIHSSLRGVDSILSQAMETKDGLRAQRHSLTGANSGLAGLANNLPSISRVVDAIQRIKTRDNIIIGLLTACCLCFTIWYLV 160
            R   S +++RYREIL     DF+K+   + R+RE  EL     G   N G +NG D   P M+QLLRERNAI +S++   S+L+QA   +  LR+Q  SL G    +A +A N+P ++ +++ I++ + RD+ ++G + A C+ FT+WYL 
Sbjct:  140 RSQHSLLVKRYREILFDCGADFKKTSAGVARRREAMELFR---GSNDNKG-ENGTD---PAMEQLLRERNAIDNSMKSASSVLNQASSVRSELRSQGASLRGVGGTMASIAGNIPGVNNLIERIRQKRMRDDKVVGGVVAGCILFTLWYLF 283          
BLAST of EWM24646.1 vs. NCBI_GenBank
Match: gi|675179753|ref|XP_008898761.1| (hypothetical protein PPTG_06563 [Phytophthora parasitica INRA-310] >gi|566008247|gb|ETI31158.1| hypothetical protein F443_21871 [Phytophthora parasitica P1569] >gi|567945729|gb|ETK71540.1| hypothetical protein L915_21264 [Phytophthora parasitica] >gi|567974389|gb|ETL24984.1| hypothetical protein L916_21131 [Phytophthora parasitica] >gi|568003858|gb|ETL78199.1| hypothetical protein L917_20989 [Phytophthora parasitica] >gi|568033768|gb|ETM31462.1| hypothetical protein L914_21006 [Phytophthora parasitica] >gi|568101748|gb|ETN16434.1| hypothetical protein PPTG_06563 [Phytophthora parasitica INRA-310] >gi|570311925|gb|ETO59873.1| hypothetical protein F444_21893 [Phytophthora parasitica P1976] >gi|570935720|gb|ETP00977.1| hypothetical protein F441_21753 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 108.227 bits (269), Expect = 2.952e-26
Identity = 56/146 (38.36%), Postives = 88/146 (60.27%), Query Frame = 0
Query:   15 AVLQRYREILDYYANDFQKSQTVLQRKRETAELLSTRAGGKPNTGTKNGADWGNPQMDQLLRERNAIHSSLRGVDSILSQAMETKDGLRAQRHSLTGANSGLAGLANNLPSISRVVDAIQRIKTRDNIIIGLLTACCLCFTIWYLV 160
            A+LQRYRE+   +  +F++S + LQ KR+  +L     G + +TG  + A     +MD LL ER A+ SS     SI+ QAM TK+ L  QR   T ++  +A L ++   I+ +V+ I+R K R+N I+ L+ A C+CFT+W++V
Sbjct:   92 AMLQRYREVYFDFNTEFRRSMSALQEKRDVQKLF----GNRAHTGHSDDA-----EMDSLLNERRAVDSSRSMTSSIIEQAMATKNALENQRRQFTSSHGKVATLGSSFAGINTLVEQIRRKKMRNNTILALVIAGCICFTLWWVV 228          
BLAST of EWM24646.1 vs. NCBI_GenBank
Match: gi|1210522253|dbj|GAX19015.1| (golgi SNAP receptor complex member 1 [Fistulifera solaris])

HSP 1 Score: 104.76 bits (260), Expect = 8.329e-25
Identity = 58/158 (36.71%), Postives = 92/158 (58.23%), Query Frame = 0
Query:    2 GQMLAHGARPSSSAVLQRYREILDYYANDFQKSQTVLQRKRETAELLSTRAGGKPNTGTKNGADWGNPQMDQLLRERNAIHSSLRGVDSILSQAMETKDGLRAQRHSLTGANSGLAGLANNLPSISRVVDAIQRIKTRDNIIIGLLTACCLCFTIWYL 159
            G+++  G  PS  AV  RYR+IL     D+ KS  VL+R +E  ELL+    G   + + +G D   P M+ LLRERN I++S+    S++ QA   +  LR Q  SL  A + +  +  N+P ++ +V+ I+R ++RD+ I+  + A C+ FT+WYL
Sbjct:   81 GRLIPAGTLPSQRAVGNRYRDILQDLRTDYDKSLAVLRRAKERHELLA----GAAASSSDDGRD---PGMESLLRERNHINNSMNAAASVIGQAESVRQDLRWQGRSLRSAGTLINAITTNIPGLNGLVEQIRRRRSRDDQIVAGVIASCIVFTLWYL 231          
BLAST of EWM24646.1 vs. NCBI_GenBank
Match: gi|1210525856|dbj|GAX15462.1| (golgi SNAP receptor complex member 1 [Fistulifera solaris])

HSP 1 Score: 104.375 bits (259), Expect = 1.123e-24
Identity = 58/159 (36.48%), Postives = 93/159 (58.49%), Query Frame = 0
Query:    2 GQMLAHGARPSSSAVLQRYREILDYYANDFQKSQTVLQRKRETAELLSTRAGGKPNTGTKNGADWGNPQMDQLLRERNAIHSSLRGVDSILSQAMETKDGLRAQRHSLTGANSGLAGLANNLPSISRVVDAIQRIKTRDNIIIGLLTACCLCFTIWYLV 160
            G+++   A PS  AV  RYR+I     +D+ KS TVL+R +E  ELL+    G   + + +G D   P M+ LLRERN I++S+    S++ QA   +  LR Q  SL  A + +  +  N+P ++ +V+ I+R ++RD+ I+  + A C+ FT+WYL 
Sbjct:   81 GRLIPAAALPSQRAVGNRYRDIWQDLRSDYDKSLTVLRRAKERHELLA----GAAASSSDDGRD---PGMESLLRERNHINNSMNAAASVIGQAESVRQDLRWQGRSLRSAGTLINAITTNIPGLNGLVEQIRRRRSRDDQIVAGVIASCIVFTLWYLF 232          
BLAST of EWM24646.1 vs. NCBI_GenBank
Match: gi|301118212|ref|XP_002906834.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262108183|gb|EEY66235.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 103.99 bits (258), Expect = 1.514e-24
Identity = 56/146 (38.36%), Postives = 85/146 (58.22%), Query Frame = 0
Query:   15 AVLQRYREILDYYANDFQKSQTVLQRKRETAELLSTRAGGKPNTGTKNGADWGNPQMDQLLRERNAIHSSLRGVDSILSQAMETKDGLRAQRHSLTGANSGLAGLANNLPSISRVVDAIQRIKTRDNIIIGLLTACCLCFTIWYLV 160
            A+LQRYRE+   +  +F++S + LQ KR+  +L   RA         NG    + +MD LL ER A+ SS     SI+ QAM TK+ L  QR   T ++  +A L ++   I+ +V+ I+R K R+N I+ L+ A C+CFT+W+ V
Sbjct:   92 AMLQRYRELYFDFNTEFRRSMSALQEKRDAQKLFGNRA--------HNGHS-EDAEMDSLLNERRAVDSSRSMTSSIIEQAMATKNALENQRRQFTSSHGKVATLGSSFTGINTLVEQIRRKKMRNNTILALVIAGCICFTLWWAV 228          
BLAST of EWM24646.1 vs. NCBI_GenBank
Match: gi|970644929|gb|KUF85576.1| (hypothetical protein AM587_10010542 [Phytophthora nicotianae])

HSP 1 Score: 105.531 bits (262), Expect = 2.339e-23
Identity = 56/146 (38.36%), Postives = 86/146 (58.90%), Query Frame = 0
Query:   12 SSSAVLQRYREILDYYANDFQKSQTVLQRKRETAELLSTRAGGKPNTGTKNGADWGNPQMDQLLRERNAIHSSLRGVDSILSQAMETKDGLRAQRHSLTGANSGLAGLANNLPSISRVVDAIQRIKTRDNIIIGLLTACCLCFTIW 157
            +  A+LQRYRE+   +  +F++S + LQ KR+  +L   RA    +TG  + A     +MD LL ER A+ SS     SI+ QAM TK+ L  QR   T ++  +A L ++   I+ +V+ I+R K R+N I+ L+ A C+CFT+W
Sbjct:   89 TQDAMLQRYREVYFDFNTEFRRSMSALQEKRDVQKLFGNRA----HTGHSDDA-----EMDSLLNERRAVDSSRSMTSSIIEQAMATKNALENQRRQFTSSHGKVATLGSSFAGINTLVEQIRRKKMRNNTILALVIAGCICFTLW 225          
BLAST of EWM24646.1 vs. NCBI_GenBank
Match: gi|325180259|emb|CCA14662.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 100.908 bits (250), Expect = 2.509e-23
Identity = 57/156 (36.54%), Postives = 85/156 (54.49%), Query Frame = 0
Query:    5 LAHGARPSSSAVLQRYREILDYYANDFQKSQTVLQRKRETAELLSTRAGGKPNTGTKNGADWGNPQMDQLLRERNAIHSSLRGVDSILSQAMETKDGLRAQRHSLTGANSGLAGLANNLPSISRVVDAIQRIKTRDNIIIGLLTACCLCFTIWYLV 160
            L + +     A+LQRYREI     +DF++S  V+Q KR+ A L     G + N G  + +D     +D LL ER+ + SS     +I+ QAM TK+ L  QR  LT +   +A    +   I  +V  I+R K R+N I+ L+ A C+CFT+W+ V
Sbjct:   81 LQNSSTKVQEALLQRYREIYFDLKSDFRRSTAVIQEKRDAANLF----GSRSNFGAASDSD-----VDTLLHERSKVESSRSLASTIIQQAMATKNSLETQRSRLTTSRGKMAVSTGSFSGIQNLVAGIRRKKLRNNTILALVIAVCICFTLWWTV 227          
The following BLAST results are available for this feature:
BLAST of EWM24646.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106168|gb|EWM24646.1|6.001e-115100.00snare component [Nannochloropsis gaditana][more]
gi|298714583|emb|CBJ27574.1|3.649e-3745.28Soluble NSF Attachment Protein (SNAP) Receptor (SN... [more]
gi|224006764|ref|XP_002292342.1|4.432e-2738.82SNARE component [Thalassiosira pseudonana CCMP1335... [more]
gi|224015881|ref|XP_002297585.1|5.773e-2739.07SNARE component [Thalassiosira pseudonana CCMP1335... [more]
gi|675179753|ref|XP_008898761.1|2.952e-2638.36hypothetical protein PPTG_06563 [Phytophthora para... [more]
gi|1210522253|dbj|GAX19015.1|8.329e-2536.71golgi SNAP receptor complex member 1 [Fistulifera ... [more]
gi|1210525856|dbj|GAX15462.1|1.123e-2436.48golgi SNAP receptor complex member 1 [Fistulifera ... [more]
gi|301118212|ref|XP_002906834.1|1.514e-2438.36conserved hypothetical protein [Phytophthora infes... [more]
gi|970644929|gb|KUF85576.1|2.339e-2338.36hypothetical protein AM587_10010542 [Phytophthora ... [more]
gi|325180259|emb|CCA14662.1|2.509e-2336.54conserved hypothetical protein [Albugo laibachii N... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6036rna6036Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications