EWM24646.1, cds6021 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24646.1 vs. NCBI_GenBank
Match: gi|585106168|gb|EWM24646.1| (snare component [Nannochloropsis gaditana]) HSP 1 Score: 331.257 bits (848), Expect = 6.001e-115 Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0
Query: 1 MGQMLAHGARPSSSAVLQRYREILDYYANDFQKSQTVLQRKRETAELLSTRAGGKPNTGTKNGADWGNPQMDQLLRERNAIHSSLRGVDSILSQAMETKDGLRAQRHSLTGANSGLAGLANNLPSISRVVDAIQRIKTRDNIIIGLLTACCLCFTIWYLV 160
MGQMLAHGARPSSSAVLQRYREILDYYANDFQKSQTVLQRKRETAELLSTRAGGKPNTGTKNGADWGNPQMDQLLRERNAIHSSLRGVDSILSQAMETKDGLRAQRHSLTGANSGLAGLANNLPSISRVVDAIQRIKTRDNIIIGLLTACCLCFTIWYLV
Sbjct: 1 MGQMLAHGARPSSSAVLQRYREILDYYANDFQKSQTVLQRKRETAELLSTRAGGKPNTGTKNGADWGNPQMDQLLRERNAIHSSLRGVDSILSQAMETKDGLRAQRHSLTGANSGLAGLANNLPSISRVVDAIQRIKTRDNIIIGLLTACCLCFTIWYLV 160
BLAST of EWM24646.1 vs. NCBI_GenBank
Match: gi|298714583|emb|CBJ27574.1| (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) [Ectocarpus siliculosus]) HSP 1 Score: 136.346 bits (342), Expect = 3.649e-37 Identity = 72/159 (45.28%), Postives = 103/159 (64.78%), Query Frame = 0
Query: 1 MGQMLAHGARPSSSAVLQRYREILDYYANDFQKSQTVLQRKRETAELL-STRAGGKPNTGTKNGADWGNPQMDQLLRERNAIHSSLRGVDSILSQAMETKDGLRAQRHSLTGANSGLAGLANNLPSISRVVDAIQRIKTRDNIIIGLLTACCLCFTIWY 158
MG +A GAR + SA+LQRYREIL ++ +F+K+ LQRKR+T EL S+RA GT + + + LLRE+NAIH+SL+ +L QA E ++ LR QR +L A+S L+ + N P+I+RVV+AIQ+ K +D +II + A C+ FT WY
Sbjct: 67 MGAKVAKGARKADSAMLQRYREILFDFSTEFKKTSAALQRKRDTTELFKSSRADRGGGDGTGDF------EQEHLLREQNAIHNSLQSATGVLGQAAEARESLRHQRATLGAASSTLSSMQNRFPAINRVVEAIQKKKAKDRLIIAAVMAACIFFTFWY 219
BLAST of EWM24646.1 vs. NCBI_GenBank
Match: gi|224006764|ref|XP_002292342.1| (SNARE component [Thalassiosira pseudonana CCMP1335] >gi|220971984|gb|EED90317.1| SNARE component [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 111.694 bits (278), Expect = 4.432e-27 Identity = 59/152 (38.82%), Postives = 92/152 (60.53%), Query Frame = 0
Query: 9 ARPSSSAVLQRYREILDYYANDFQKSQTVLQRKRETAELLSTRAGGKPNTGTKNGADWGNPQMDQLLRERNAIHSSLRGVDSILSQAMETKDGLRAQRHSLTGANSGLAGLANNLPSISRVVDAIQRIKTRDNIIIGLLTACCLCFTIWYLV 160
R S +++RYREIL DF+K+ + R+RE EL G N G +NG D P M+QLLRERNAI +S++ S+L+QA + LR+Q SL G +A +A N+P ++ +++ I++ + RD+ ++G + A C+ FT+WYL
Sbjct: 138 GRSQHSLLVKRYREILFDCGADFKKTSAGVARRREAMELFR---GSNDNKG-ENGTD---PAMEQLLRERNAIDNSMKSASSVLNQASSVRSELRSQGASLRGVGGTMASIAGNIPGVNNLIERIRQKRMRDDKVVGGVVAGCILFTLWYLF 282
BLAST of EWM24646.1 vs. NCBI_GenBank
Match: gi|224015881|ref|XP_002297585.1| (SNARE component [Thalassiosira pseudonana CCMP1335] >gi|220967724|gb|EED86107.1| SNARE component [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 111.694 bits (278), Expect = 5.773e-27 Identity = 59/151 (39.07%), Postives = 92/151 (60.93%), Query Frame = 0
Query: 10 RPSSSAVLQRYREILDYYANDFQKSQTVLQRKRETAELLSTRAGGKPNTGTKNGADWGNPQMDQLLRERNAIHSSLRGVDSILSQAMETKDGLRAQRHSLTGANSGLAGLANNLPSISRVVDAIQRIKTRDNIIIGLLTACCLCFTIWYLV 160
R S +++RYREIL DF+K+ + R+RE EL G N G +NG D P M+QLLRERNAI +S++ S+L+QA + LR+Q SL G +A +A N+P ++ +++ I++ + RD+ ++G + A C+ FT+WYL
Sbjct: 140 RSQHSLLVKRYREILFDCGADFKKTSAGVARRREAMELFR---GSNDNKG-ENGTD---PAMEQLLRERNAIDNSMKSASSVLNQASSVRSELRSQGASLRGVGGTMASIAGNIPGVNNLIERIRQKRMRDDKVVGGVVAGCILFTLWYLF 283
BLAST of EWM24646.1 vs. NCBI_GenBank
Match: gi|675179753|ref|XP_008898761.1| (hypothetical protein PPTG_06563 [Phytophthora parasitica INRA-310] >gi|566008247|gb|ETI31158.1| hypothetical protein F443_21871 [Phytophthora parasitica P1569] >gi|567945729|gb|ETK71540.1| hypothetical protein L915_21264 [Phytophthora parasitica] >gi|567974389|gb|ETL24984.1| hypothetical protein L916_21131 [Phytophthora parasitica] >gi|568003858|gb|ETL78199.1| hypothetical protein L917_20989 [Phytophthora parasitica] >gi|568033768|gb|ETM31462.1| hypothetical protein L914_21006 [Phytophthora parasitica] >gi|568101748|gb|ETN16434.1| hypothetical protein PPTG_06563 [Phytophthora parasitica INRA-310] >gi|570311925|gb|ETO59873.1| hypothetical protein F444_21893 [Phytophthora parasitica P1976] >gi|570935720|gb|ETP00977.1| hypothetical protein F441_21753 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 108.227 bits (269), Expect = 2.952e-26 Identity = 56/146 (38.36%), Postives = 88/146 (60.27%), Query Frame = 0
Query: 15 AVLQRYREILDYYANDFQKSQTVLQRKRETAELLSTRAGGKPNTGTKNGADWGNPQMDQLLRERNAIHSSLRGVDSILSQAMETKDGLRAQRHSLTGANSGLAGLANNLPSISRVVDAIQRIKTRDNIIIGLLTACCLCFTIWYLV 160
A+LQRYRE+ + +F++S + LQ KR+ +L G + +TG + A +MD LL ER A+ SS SI+ QAM TK+ L QR T ++ +A L ++ I+ +V+ I+R K R+N I+ L+ A C+CFT+W++V
Sbjct: 92 AMLQRYREVYFDFNTEFRRSMSALQEKRDVQKLF----GNRAHTGHSDDA-----EMDSLLNERRAVDSSRSMTSSIIEQAMATKNALENQRRQFTSSHGKVATLGSSFAGINTLVEQIRRKKMRNNTILALVIAGCICFTLWWVV 228
BLAST of EWM24646.1 vs. NCBI_GenBank
Match: gi|1210522253|dbj|GAX19015.1| (golgi SNAP receptor complex member 1 [Fistulifera solaris]) HSP 1 Score: 104.76 bits (260), Expect = 8.329e-25 Identity = 58/158 (36.71%), Postives = 92/158 (58.23%), Query Frame = 0
Query: 2 GQMLAHGARPSSSAVLQRYREILDYYANDFQKSQTVLQRKRETAELLSTRAGGKPNTGTKNGADWGNPQMDQLLRERNAIHSSLRGVDSILSQAMETKDGLRAQRHSLTGANSGLAGLANNLPSISRVVDAIQRIKTRDNIIIGLLTACCLCFTIWYL 159
G+++ G PS AV RYR+IL D+ KS VL+R +E ELL+ G + + +G D P M+ LLRERN I++S+ S++ QA + LR Q SL A + + + N+P ++ +V+ I+R ++RD+ I+ + A C+ FT+WYL
Sbjct: 81 GRLIPAGTLPSQRAVGNRYRDILQDLRTDYDKSLAVLRRAKERHELLA----GAAASSSDDGRD---PGMESLLRERNHINNSMNAAASVIGQAESVRQDLRWQGRSLRSAGTLINAITTNIPGLNGLVEQIRRRRSRDDQIVAGVIASCIVFTLWYL 231
BLAST of EWM24646.1 vs. NCBI_GenBank
Match: gi|1210525856|dbj|GAX15462.1| (golgi SNAP receptor complex member 1 [Fistulifera solaris]) HSP 1 Score: 104.375 bits (259), Expect = 1.123e-24 Identity = 58/159 (36.48%), Postives = 93/159 (58.49%), Query Frame = 0
Query: 2 GQMLAHGARPSSSAVLQRYREILDYYANDFQKSQTVLQRKRETAELLSTRAGGKPNTGTKNGADWGNPQMDQLLRERNAIHSSLRGVDSILSQAMETKDGLRAQRHSLTGANSGLAGLANNLPSISRVVDAIQRIKTRDNIIIGLLTACCLCFTIWYLV 160
G+++ A PS AV RYR+I +D+ KS TVL+R +E ELL+ G + + +G D P M+ LLRERN I++S+ S++ QA + LR Q SL A + + + N+P ++ +V+ I+R ++RD+ I+ + A C+ FT+WYL
Sbjct: 81 GRLIPAAALPSQRAVGNRYRDIWQDLRSDYDKSLTVLRRAKERHELLA----GAAASSSDDGRD---PGMESLLRERNHINNSMNAAASVIGQAESVRQDLRWQGRSLRSAGTLINAITTNIPGLNGLVEQIRRRRSRDDQIVAGVIASCIVFTLWYLF 232
BLAST of EWM24646.1 vs. NCBI_GenBank
Match: gi|301118212|ref|XP_002906834.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262108183|gb|EEY66235.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 103.99 bits (258), Expect = 1.514e-24 Identity = 56/146 (38.36%), Postives = 85/146 (58.22%), Query Frame = 0
Query: 15 AVLQRYREILDYYANDFQKSQTVLQRKRETAELLSTRAGGKPNTGTKNGADWGNPQMDQLLRERNAIHSSLRGVDSILSQAMETKDGLRAQRHSLTGANSGLAGLANNLPSISRVVDAIQRIKTRDNIIIGLLTACCLCFTIWYLV 160
A+LQRYRE+ + +F++S + LQ KR+ +L RA NG + +MD LL ER A+ SS SI+ QAM TK+ L QR T ++ +A L ++ I+ +V+ I+R K R+N I+ L+ A C+CFT+W+ V
Sbjct: 92 AMLQRYRELYFDFNTEFRRSMSALQEKRDAQKLFGNRA--------HNGHS-EDAEMDSLLNERRAVDSSRSMTSSIIEQAMATKNALENQRRQFTSSHGKVATLGSSFTGINTLVEQIRRKKMRNNTILALVIAGCICFTLWWAV 228
BLAST of EWM24646.1 vs. NCBI_GenBank
Match: gi|970644929|gb|KUF85576.1| (hypothetical protein AM587_10010542 [Phytophthora nicotianae]) HSP 1 Score: 105.531 bits (262), Expect = 2.339e-23 Identity = 56/146 (38.36%), Postives = 86/146 (58.90%), Query Frame = 0
Query: 12 SSSAVLQRYREILDYYANDFQKSQTVLQRKRETAELLSTRAGGKPNTGTKNGADWGNPQMDQLLRERNAIHSSLRGVDSILSQAMETKDGLRAQRHSLTGANSGLAGLANNLPSISRVVDAIQRIKTRDNIIIGLLTACCLCFTIW 157
+ A+LQRYRE+ + +F++S + LQ KR+ +L RA +TG + A +MD LL ER A+ SS SI+ QAM TK+ L QR T ++ +A L ++ I+ +V+ I+R K R+N I+ L+ A C+CFT+W
Sbjct: 89 TQDAMLQRYREVYFDFNTEFRRSMSALQEKRDVQKLFGNRA----HTGHSDDA-----EMDSLLNERRAVDSSRSMTSSIIEQAMATKNALENQRRQFTSSHGKVATLGSSFAGINTLVEQIRRKKMRNNTILALVIAGCICFTLW 225
BLAST of EWM24646.1 vs. NCBI_GenBank
Match: gi|325180259|emb|CCA14662.1| (conserved hypothetical protein [Albugo laibachii Nc14]) HSP 1 Score: 100.908 bits (250), Expect = 2.509e-23 Identity = 57/156 (36.54%), Postives = 85/156 (54.49%), Query Frame = 0
Query: 5 LAHGARPSSSAVLQRYREILDYYANDFQKSQTVLQRKRETAELLSTRAGGKPNTGTKNGADWGNPQMDQLLRERNAIHSSLRGVDSILSQAMETKDGLRAQRHSLTGANSGLAGLANNLPSISRVVDAIQRIKTRDNIIIGLLTACCLCFTIWYLV 160
L + + A+LQRYREI +DF++S V+Q KR+ A L G + N G + +D +D LL ER+ + SS +I+ QAM TK+ L QR LT + +A + I +V I+R K R+N I+ L+ A C+CFT+W+ V
Sbjct: 81 LQNSSTKVQEALLQRYREIYFDLKSDFRRSTAVIQEKRDAANLF----GSRSNFGAASDSD-----VDTLLHERSKVESSRSLASTIIQQAMATKNSLETQRSRLTTSRGKMAVSTGSFSGIQNLVAGIRRKKLRNNTILALVIAVCICFTLWWTV 227 The following BLAST results are available for this feature:
BLAST of EWM24646.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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